VistA-smart/p/C0SDEM.m

288 lines
9.7 KiB
Mathematica

C0SDEM ; GPL - Smart Demographics Processing ; 10/30/12 10:59am
;;1.0;VISTA SMART CONTAINER;;Sep 26, 2012;Build 5
;Copyright 2012 George Lilly.
;
; This program is free software: you can redistribute it and/or modify
; it under the terms of the GNU Affero General Public License as
; published by the Free Software Foundation, either version 3 of the
; License, or (at your option) any later version.
;
; This program is distributed in the hope that it will be useful,
; but WITHOUT ANY WARRANTY; without even the implied warranty of
; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
; GNU Affero General Public License for more details.
;
; You should have received a copy of the GNU Affero General Public License
; along with this program. If not, see <http://www.gnu.org/licenses/>.
;
Q
;
;<?xml version="1.0" encoding="utf-8"?>
;<rdf:RDF
; xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
; xmlns:sp="http://smartplatforms.org/terms#"
; xmlns:dcterms="http://purl.org/dc/terms/"
; xmlns:v="http://www.w3.org/2006/vcard/ns#"
; xmlns:foaf="http://xmlns.com/foaf/0.1/">
; <sp:Demographics>
;
; <v:n>
; <v:Name>
; <v:given-name>Bob</v:given-name>
; <v:additional-name>J</v:additional-name>
; <v:family-name>Odenkirk</v:family-name>
; </v:Name>
; </v:n>
;
; <v:adr>
; <v:Address>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
;
; <v:street-address>15 Main St</v:street-address>
; <v:extended-address>Apt 2</v:extended-address>
; <v:locality>Wonderland</v:locality>
; <v:region>OZ</v:region>
; <v:postal-code>54321</v:postal-code>
; <v:country>USA</v:country>
; </v:Address>
; </v:adr>
;
; <v:tel>
; <v:Tel>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
; <rdf:value>800-555-1212</rdf:value>
; </v:Tel>
; </v:tel>
;
; <v:tel>
; <v:Tel>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Cell" />
; <rdf:value>800-555-1515</rdf:value>
; </v:Tel>
; </v:tel>
;
; <foaf:gender>male</foaf:gender>
; <v:bday>1959-12-25</v:bday>
; <v:email>bob.odenkirk@example.com</v:email>
;
; <sp:medicalRecordNumber>
; <sp:Code>
; <dcterms:title>My Hospital Record 2304575</dcterms:title>
; <dcterms:identifier>2304575</dcterms:identifier>
; <sp:system>My Hospital Record</sp:system>
; </sp:Code>
; </sp:medicalRecordNumber>
;
; </sp:Demographics>
;</rdf:RDF><?xml version="1.0" encoding="utf-8"?>
;<rdf:RDF
; xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
; xmlns:sp="http://smartplatforms.org/terms#"
; xmlns:dcterms="http://purl.org/dc/terms/"
; xmlns:v="http://www.w3.org/2006/vcard/ns#"
; xmlns:foaf="http://xmlns.com/foaf/0.1/">
; <sp:Demographics>
;
; <v:n>
; <v:Name>
; <v:given-name>Bob</v:given-name>
; <v:additional-name>J</v:additional-name>
; <v:family-name>Odenkirk</v:family-name>
; </v:Name>
; </v:n>
;
; <v:adr>
; <v:Address>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
;
; <v:street-address>15 Main St</v:street-address>
; <v:extended-address>Apt 2</v:extended-address>
; <v:locality>Wonderland</v:locality>
; <v:region>OZ</v:region>
; <v:postal-code>54321</v:postal-code>
; <v:country>USA</v:country>
; </v:Address>
; </v:adr>
;
; <v:tel>
; <v:Tel>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Home" />
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Pref" />
; <rdf:value>800-555-1212</rdf:value>
; </v:Tel>
; </v:tel>
;
; <v:tel>
; <v:Tel>
; <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Cell" />
; <rdf:value>800-555-1515</rdf:value>
; </v:Tel>
; </v:tel>
;
; <foaf:gender>male</foaf:gender>
; <v:bday>1959-12-25</v:bday>
; <v:email>bob.odenkirk@example.com</v:email>
;
; <sp:medicalRecordNumber>
; <sp:Code>
; <dcterms:title>My Hospital Record 2304575</dcterms:title>
; <dcterms:identifier>2304575</dcterms:identifier>
; <sp:system>My Hospital Record</sp:system>
; </sp:Code>
; </sp:medicalRecordNumber>
;
; </sp:Demographics>
;</rdf:RDF>
;G(1)="nodeID:25591^rdf:type^v:Home"
;G(2)="nodeID:25591^rdf:type^v:Pref"
;G(3)="nodeID:25591^rdf:type^v:Tel"
;G(4)="nodeID:25591^rdf:value^800-369-6403"
;G(5)="nodeID:25611^rdf:type^v:Name"
;G(6)="nodeID:25611^v:additional-name^N"
;G(7)="nodeID:25611^v:family-name^Brooks"
;G(8)="nodeID:25611^v:given-name^Brian"
;G(9)="nodeID:25622^dcterms:identifier^981968"
;G(10)="nodeID:25622^dcterms:title^My Hospital Record 981968"
;G(11)="nodeID:25622^rdf:type^sp:Code"
;G(12)="nodeID:25622^sp:system^My Hospital Record"
;G(13)="nodeID:25623^rdf:type^v:Address"
;G(14)="nodeID:25623^rdf:type^v:Home"
;G(15)="nodeID:25623^rdf:type^v:Pref"
;G(16)="nodeID:25623^v:locality^Bixby"
;G(17)="nodeID:25623^v:postal-code^74008"
;G(18)="nodeID:25623^v:region^OK"
;G(19)="nodeID:25623^v:street-address^82 Lake St"
;G(20)="smart:981968/demographics^foaf:gender^male"
;G(21)="smart:981968/demographics^rdf:type^sp:Demographics"
;G(22)="smart:981968/demographics^sp:belongsTo^smart:981968"
;G(23)="smart:981968/demographics^sp:medicalRecordNumber^nodeID:25622"
;G(24)="smart:981968/demographics^v:adr^nodeID:25623"
;G(25)="smart:981968/demographics^v:bday^1956-03-23"
;G(26)="smart:981968/demographics^v:email^brian.brooks@example.com"
;G(27)="smart:981968/demographics^v:n^nodeID:25611"
;G(28)="smart:981968/demographics^v:tel^nodeID:25591"
Q
;
PATIENT(GRTN,C0SARY) ; GRTN, passed by reference,
; is the return name of the graph created. "" if none
; C0SARY is passed in by reference and is the NHIN array of patient
;
I $O(C0SARY("patient",""))="" D Q ;
. I $D(DEBUG) W !,"No Patient array"
. S GRTN=""
S GRTN="" ; default to no patient
N C0SGRF
S C0SGRF="vistaSmart:"_ZPATID_"/patient"
S ZPAT=C0SGRF ; subject is the same as the graph name
I $D(DEBUG) W !,"Processing ",C0SGRF
D DELGRAPH^C0XF2N(C0SGRF) ; delete the old graph
D INITFARY^C0XF2N("C0XFARY") ; which triple store to use
N FARY S FARY="C0XFARY"
D USEFARY^C0XF2N(FARY)
D VOCINIT^C0XUTIL
;
N ZPN,ZR
D STARTADD^C0XF2N
;
; First do the base demographic graph
;
S ZPN=$NA(C0SARY("patient",1)) ; name of predicate array for this patient
N SEX S SEX=$G(@ZPN@("gender@value"))
I SEX="M" S SEX="male"
I SEX="F" S SEX="female"
S ZR("foaf:gender")=SEX
S ZR("rdf:type")="sp:Demographics"
S ZR("sp:belongsTo")=ZPAT
N PATIENT
S PATIENT=$P(ZPAT,"#",2)
I $D(DEBUG) W !,"PROCESSING PATIENT ",PATIENT
N NMREC S NMREC=$$ANONS^C0XF2N ; new anonomous subject for med rec graph
S ZR("sp:medicalRecordNumber")=NMREC
N NVADR S NVADR=$$ANONS^C0XF2N ; for address
S ZR("v:adr")=NVADR
N NNAME S NNAME=$$ANONS^C0XF2N ; for name
S ZR("v:n")=NNAME
N NTEL S NTEL=$$ANONS^C0XF2N ; for telephone
I $D(@ZPN@("telecomList.telecom@value")) S ZR("v:tel")=NTEL ; only if exists
N BDATE
S ZX=""
S ZX=$G(@ZPN@("dob@value")) ; date of birth in fileman format
S BDATE=$$FMTE^XLFDT(ZX,"7D") ; ordered date
S BDATE=$TR(BDATE,"/","-") ; change slashes to hyphens
I BDATE="" S BDATE="UNKNOWN"
N Z2,Z3
S Z2=$P(BDATE,"-",2)
S Z3=$P(BDATE,"-",3)
I $L(Z2)=1 S $P(BDATE,"-",2)="0"_Z2
I $L(Z3)=1 S $P(BDATE,"-",3)="0"_Z3
S ZR("v:bday")=BDATE
I $D(C0SVISTA) D ;
. S ZR("vista:SSN")=$G(@ZPN@("ssn@value")) ; SSN
. S ZR("vista:DFN")=$G(@ZPN@("id@value")) ; DFN
D ADDINN^C0XF2N(C0SGRF,ZPAT,.ZR) ; create base graph
K ZR
;
; create address sub-graph
;
S ZR("rdf:type")="v:Address"
S ZR("rdf:type")="v:Home"
S ZR("v:locality")=$G(@ZPN@("address@city"))
S ZR("v:postal-code")=$G(@ZPN@("address@postalCode"))
S ZR("v:region")=$G(@ZPN@("address@stateProvince"))
S ZR("v:street-address")=$G(@ZPN@("address@streetLine1"))
D ADDINN^C0XF2N(C0SGRF,NVADR,.ZR) ; create the vcard address
K ZR
;
; create medical record subgraph
;
S ZR("dcterms:identifier")=$G(@ZPN@("id@value"))
S ZR("dcterms:title")="VistA Patient Record "_ZR("dcterms:identifier")
S ZR("rdf:type")="sp:Code"
S ZR("sp:system")="VistA Patient Record"
D ADDINN^C0XF2N(C0SGRF,NMREC,.ZR) ; create medical record graph
K ZR
;
; create name subgraph
;
N ZNF,ZNL,ZNM,ZNAM
S ZR("rdf:type")="v:Name"
S ZX=$G(@ZPN@("givenNames@value")) ; first name and middle names
S ZNF=$P(ZX," ",1) ; first name is first piece
S ZNM=$P(ZX," ",2) ; middle names are the rest
S ZR("v:additional-name")=ZNM
S ZR("v:family-name")=$G(@ZPN@("familyName@value"))
S ZR("v:given-name")=ZNF
D ADDINN^C0XF2N(C0SGRF,NNAME,.ZR) ; insert name graph
K ZR
;
; create telephone subgraph
;
D ;
. S ZR("rdf:value")=$G(@ZPN@("telecomList.telecom@value"))
. I ZR("rdf:value")="" Q ; telephone number missing, no subgraph
. S ZR("rdf:type")="v:Tel"
. D ADDINN^C0XF2N(C0SGRF,NTEL,.ZR)
K ZR
;
; load the demographics graph and all sub graphs to the triple store
;
D BULKLOAD^C0XF2N(.C0XFDA)
S GRTN=C0SGRF
Q
;
AGES ; LIST ALL PATIENTS AND THEIR AGES
N ZI S ZI=0
F S ZI=$O(^DPT(ZI)) Q:+ZI=0 D ; FOR EVERY PATIENT
. N ZDOB
. S ZDOB=$$GET1^DIQ(2,ZI_",","DOB","I") ; FILEMAN DOB
. N ZNAME
. S ZNAME=$P(^DPT(ZI,0),U)
. N ZSEX
. S ZSEX=$$GET1^DIQ(2,ZI_",","SEX")
. W !,"DFN:",ZI," ",ZNAME," AGE: ",+$$BRIEF^VWTIME(ZDOB)," YEAR OLD ",ZSEX
Q
;