Commit Graph

239 Commits

Author SHA1 Message Date
Gilles Sadowski 74a851b611 MATH-1371: Elkan's enhancement to "K-Means" algorithm.
Original implementation is a old PR provided by Artem Barger.
Updated and changed to pass the code style checks.

I did not review how this algorithm departs from the other
implementations available in the same package, and whether
some other design could minimize duplicate codes (but it
would have been a pity to drop a potential performance
improvement).
A thorough examination should be considered, when tackling
the refactoring of the "clustering" package.

Closes #35.
2022-01-24 19:57:29 +01:00
Gilles Sadowski 134d731a6b Unused "import". 2022-01-24 18:12:52 +01:00
Gilles Sadowski f862efe4c6 MATH-1589: Remove spurious "throws" clause. 2022-01-24 05:39:59 +01:00
Gilles Sadowski c6b4ca908c MATH-1640: Do not try to outguess the caller. 2022-01-22 18:53:17 +01:00
Arturo Bernal 645d85a8c7 Avoid array declarations written in C-style syntax and replace it with java.
Closes #202.
2022-01-20 18:44:07 +01:00
Gilles Sadowski 426545d1db Relax tolerance (unit test). 2022-01-19 05:19:47 +01:00
Gilles Sadowski ae6ceeadd1 Replace calls to deprecated classes and methods (unit tests). 2022-01-18 04:37:54 +01:00
Gilles Sadowski d81b5e921e Replace "CMAESOptimizer.Sigma" with "Sigma". 2022-01-17 02:37:20 +01:00
Gilles Sadowski 336811dff5 Relax tolerance (unit tests). 2022-01-13 15:53:20 +01:00
Gilles Sadowski 7bb6190584 Remove spurious file.
Thanks to Karl-Philipp Richter.

Closes #201.
2022-01-13 15:50:22 +01:00
Gilles Sadowski d35194c995 Update copyright notice (2022). 2022-01-06 01:18:24 +01:00
Gilles Sadowski 2f48fbb5f9 Unused "import" statements. 2022-01-01 13:25:44 +01:00
Gilles Sadowski e7002a0215 MATH-1594: Remove "Serializable". 2021-12-31 01:59:20 +01:00
Gilles Sadowski eab5cb3af1 MATH-1594: Remove "Serializable". 2021-12-31 01:44:22 +01:00
Gilles Sadowski 94061dc566 MATH-1594: Remove "Serializable". 2021-12-31 00:59:27 +01:00
Gilles Sadowski 83fb6ef292 Remove spurious "throws" clause. 2021-12-31 00:53:17 +01:00
Gilles Sadowski 8904e6263a MATH-1594: Remove "Serializable". 2021-12-31 00:44:16 +01:00
Gilles Sadowski d3c03ebc9b Add unit tests. 2021-12-31 00:34:07 +01:00
Gilles Sadowski 9f633f7af4 MATH-1594: Remove "Serializable". 2021-12-31 00:31:49 +01:00
Gilles Sadowski 89f0abb4ea MATH-1594: Remove "Serializable". 2021-12-30 23:29:18 +01:00
Gilles Sadowski 4f0a49b674 MATH-1594: Remove "Serializable". 2021-12-30 18:12:41 +01:00
Gilles Sadowski aa0bee3055 MATH-1594: Remove "Serializable". 2021-12-30 18:11:26 +01:00
Gilles Sadowski eac2e8b627 MATH-1594: Remove "Serializable". 2021-12-30 17:27:48 +01:00
Gilles Sadowski 620b330f47 Comment out test case that fails too often. 2021-12-01 02:36:17 +01:00
Gilles Sadowski c6094cf9e0 MATH-1635: Unit test demonstrating the reported issue.
Test is set to "@Ignore" since the behaviour may be a known limitation.
2021-12-01 02:27:51 +01:00
Gilles Sadowski 226c1fc638 MATH-1636: Remove "isSupportedConnected" (as per STATISTICS-48). 2021-12-01 02:06:16 +01:00
Gilles Sadowski 21e230ae83 MATH-1630: Runtime switch between JDK and CM implementations of the methods defined in "java.lang.Math".
Default is to use the CM implementations in order to retain previous behaviour.
When using the JDK implementations, some unit tests fail (on Java 8).

Class "AccurateMath" was moved to "o.a.c.math4.core" package.
[Unit tests for that class were not moved because they depend on "legacy" classes.]
2021-10-16 11:14:09 +02:00
aherbert aa58ab0fd6 Updated tests to use factory constructors for Statistics distributions 2021-10-13 14:20:47 +01:00
aherbert 84677cd0db Updated to use factory constructors for Statistics distributions 2021-10-13 14:01:08 +01:00
Gilles Sadowski 3a5cf279bb MATH-1462: Extend workaround for bins that contain up to 3 values. 2021-09-27 01:02:54 +02:00
Maciej Kwidzinski d4de59a15a MATH-1462: Reproduce the infinite quantile bug 2021-09-18 12:20:35 +02:00
Gilles Sadowski b44c2610e0 Javadoc. 2021-09-18 03:05:51 +02:00
Gilles Sadowski b89f677c67 Relax tolerance (unit tests). 2021-09-01 13:34:56 +02:00
Gilles Sadowski 6e11126615 Spurious "throws" clauses. 2021-09-01 11:25:20 +02:00
Gilles Sadowski b222580737 Replace algorithm used in "best list" search.
Although efficient in terms of evaluations, "NelderMeadTransform" fails for
some higher-dimensional test functions.
2021-09-01 03:43:05 +02:00
Gilles Sadowski 1811eeaf37 Unused "import". 2021-08-27 20:58:27 +02:00
Gilles Sadowski bf1c2c214c Remove obsolete helper class for unit testing.
Retries are handled by the "surefire" plugin.
2021-08-27 19:16:03 +02:00
Gilles Sadowski dd0acaa9ff Relax expectations (unit test). 2021-08-27 19:15:17 +02:00
Gilles Sadowski 6f33d5f0a7 Fix incorrect usage of "ROSENBROCK" test function (unit tests). 2021-08-27 18:35:47 +02:00
Gilles Sadowski cc5ae51f98 Favouring the "expanded" simplex over the "reflected" one.
This modification decreases the number of function evaluations in several
test cases. Note however that the original description of the algorithm
uses the strict inequality...
2021-08-27 17:24:51 +02:00
Gilles Sadowski f1ad9d1b00 Simplex search in higher-dimensional cases (unit test). 2021-08-27 05:37:49 +02:00
Gilles Sadowski ca826ba76b Add (back) "POwELL" standard test function for optimizers. 2021-08-26 23:56:42 +02:00
Gilles Sadowski f58da4abf5 Use default SA setup in "SimplexOptimizerTest" (unit test).
A single additional search finds the optimum of the test functions.
2021-08-26 02:05:15 +02:00
Gilles Sadowski 06ec7ad0bc MATH-1622: Simulated annealing entails at least one additional search.
Also ensure that the "best list" contains at least two points.
2021-08-26 01:39:46 +02:00
Gilles Sadowski 677f5f7a3f Input files for "SimplexOptimizerTest" (unit tests). 2021-08-25 01:51:34 +02:00
Gilles Sadowski 2ccdf8d002 MATH-1622: Simulated annealing variant of "NelderMeadTransform". 2021-08-25 01:50:28 +02:00
Gilles Sadowski 80a7eb1832 Change how simulated annealing affects the transformed simplex (cf. MATH-1622).
Compared with commit 97462b1a1b, this commit is
more consistent with assumptions of the original (non-hybridized) algorithm.
2021-08-24 15:46:10 +02:00
Gilles Sadowski c21a810558 Useless local variable. 2021-08-24 04:09:42 +02:00
Gilles Sadowski f8d7476614 Input files for "SimplexOptimizerTest" (unit tests). 2021-08-24 01:28:43 +02:00
Gilles Sadowski 97462b1a1b MATH-1622: Simulated annealing variant of "MultiDirectionalTransform". 2021-08-24 01:18:16 +02:00