072539b502
Made protected fields private. JIRA: MATH-207.
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@787067 13f79535-47bb-0310-9956-ffa450edef68
2009-06-21 19:04:04 +00:00
18b2ddb24b
fixed Adams-Bashforth order for error control (it is k, not k+1)
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@787052 13f79535-47bb-0310-9956-ffa450edef68
2009-06-21 17:07:27 +00:00
5db7c253e1
removed the current point from count in multistep integrators
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updated documentation since now Adams-Bashforth and Adams-Moulton
are adaptive stepsize integrators
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@787050 13f79535-47bb-0310-9956-ffa450edef68
2009-06-21 17:01:03 +00:00
4ee03f09ff
Added Spearman's correlation.
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786940 13f79535-47bb-0310-9956-ffa450edef68
2009-06-21 02:22:09 +00:00
b3c7fd661c
Restore Serializable to PolynomialFunction
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786936 13f79535-47bb-0310-9956-ffa450edef68
2009-06-21 01:12:22 +00:00
828c863a00
Added ranking subsection.
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786935 13f79535-47bb-0310-9956-ffa450edef68
2009-06-21 00:58:14 +00:00
15c9f02e5c
Remove Serializable from some tranient analitics classes.
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Let me know if I've nuked ur favorite one, and I can put it back
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786927 13f79535-47bb-0310-9956-ffa450edef68
2009-06-20 23:37:47 +00:00
7f8175d4f6
Fix thread-safety issues
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- code failed to use synch. read
- code could potentially use two different random Generators if another thread changed it
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786918 13f79535-47bb-0310-9956-ffa450edef68
2009-06-20 22:17:36 +00:00
f4275f3371
Made aggregation threadsafe.
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786911 13f79535-47bb-0310-9956-ffa450edef68
2009-06-20 21:35:32 +00:00
aa118ca31c
removed old maven 1 stuff
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786900 13f79535-47bb-0310-9956-ffa450edef68
2009-06-20 20:02:27 +00:00
45786158ab
adding missing Apache header
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786890 13f79535-47bb-0310-9956-ffa450edef68
2009-06-20 19:23:44 +00:00
b6de8e8e8f
documented Adams-Bashforth and Adams-Moulton ODE integrators
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786885 13f79535-47bb-0310-9956-ffa450edef68
2009-06-20 19:06:55 +00:00
a4ef3f9941
fixed a warning about a mission serializeVersionUID.
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However, should this really be serializable at all ?
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786883 13f79535-47bb-0310-9956-ffa450edef68
2009-06-20 18:57:30 +00:00
4474f96263
removed lots of serialization in ODE
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the only classes/interfaces for which serialization is really important in this package are the step interpolators. The reason for that is that the ContinuousOutputModel is explicitly serializable and contains step interpolators. This allows users to perform integration of any complex model and to save the result of the integration for all integration range by serializing a ContinuousOutputModel instance. This feature is a major one.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786881 13f79535-47bb-0310-9956-ffa450edef68
2009-06-20 18:53:08 +00:00
5fc860d2c1
removed serialization for multistart optimizers
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786878 13f79535-47bb-0310-9956-ffa450edef68
2009-06-20 18:17:32 +00:00
d8575cde51
changed the Adams-Bashforth and Adams-Moulton multistep integrators to adaptive stepsize.
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this was made possible thanks to the Nordsieck representation of integration state
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786877 13f79535-47bb-0310-9956-ffa450edef68
2009-06-20 18:15:54 +00:00
83ec0f9328
completely changed integration start phase: now the starter integrator for
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multistep methods do not advance time anymore, it is interrupted at first step
end and the interpolator is used to reconstruct Nordsieck vector information at
integration start. Then the normal multistep integrators does start also exactly
at integration start and is responsible for all time advancing stuff, including
step handlers and events handlers management.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786875 13f79535-47bb-0310-9956-ffa450edef68
2009-06-20 18:13:24 +00:00
8702a27155
simplified arrays allocation and copying
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786874 13f79535-47bb-0310-9956-ffa450edef68
2009-06-20 18:09:16 +00:00
1308cc984e
error messages for Loess interpolation
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786821 13f79535-47bb-0310-9956-ffa450edef68
2009-06-20 13:43:29 +00:00
c5f6dff523
added Loess interpolator, applying Eugene Kirpichov's patch
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JIRA: MATH-278
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786819 13f79535-47bb-0310-9956-ffa450edef68
2009-06-20 13:42:56 +00:00
90fee3729f
fixed checkstyle errors
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786817 13f79535-47bb-0310-9956-ffa450edef68
2009-06-20 13:31:48 +00:00
355857cbeb
Change Complex to use readResolve instead of introspection
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786751 13f79535-47bb-0310-9956-ffa450edef68
2009-06-20 03:00:18 +00:00
136d06b2b3
added back findbugs exclusion rules for a deprecated class that is still there under its old name
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2009-06-19 12:38:01 +00:00
2a1842f3ef
merged curve fitting from mantissa into commons-math
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786479 13f79535-47bb-0310-9956-ffa450edef68
2009-06-19 12:36:16 +00:00
6463532544
added internal error generation for defensive programming
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786478 13f79535-47bb-0310-9956-ffa450edef68
2009-06-19 12:33:36 +00:00
74a6186c3e
added new tests
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786467 13f79535-47bb-0310-9956-ffa450edef68
2009-06-19 12:04:01 +00:00
e81ef196cd
added protection against infinite loops by setting a maximal number of evaluations
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(some classes were forgotten in the first pass to fix this problem)
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786466 13f79535-47bb-0310-9956-ffa450edef68
2009-06-19 12:03:14 +00:00
b09a8717be
Change the Complex isNaN and isInfinite fields to be transient
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786359 13f79535-47bb-0310-9956-ffa450edef68
2009-06-19 03:26:28 +00:00
b353f0daa6
Optimized isNaN, isInfinite. Jira: MATH-2276. Contributed by Mark Anderson.
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@785552 13f79535-47bb-0310-9956-ffa450edef68
2009-06-17 11:00:40 +00:00
913ff1facc
More Serialization changes, mostly for ode and friends.
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Unfortunately, had to leave some abstract base classes as Serializable, since they had no senible default construters. But left them with meaningless UIDs, to break anyone that doesn't override it.
Of course, if anyone has a better patch, I'm happy to implement it. At this point, the serialization changes for [math] should be almost done.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@785473 13f79535-47bb-0310-9956-ffa450edef68
2009-06-17 04:02:35 +00:00
e082a039f8
Added Genetic Algorithm implementation.
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JIRA: MATH-207
Contributed by David Stefka
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@784604 13f79535-47bb-0310-9956-ffa450edef68
2009-06-14 19:04:32 +00:00
496d85cf17
removed remaining references to DenseXxx{Matrix/Vector}
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783741 13f79535-47bb-0310-9956-ffa450edef68
2009-06-11 12:35:42 +00:00
30ab6c8c3d
renamed RealMatrixImpl, RealVectorImpl, FieldMatrixImpl and FieldVectorImpl
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into Array2DRowRealMatrix, ArrayRealVector, Array2DRowFieldMatrix and ArrayFieldVector
as suggested by Sam in http://markmail.org/message/hh37ivxpzaoapekj
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783702 13f79535-47bb-0310-9956-ffa450edef68
2009-06-11 08:54:02 +00:00
6fb3ae713e
switch the matrix type built by factory methods depending on the dimension
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783680 13f79535-47bb-0310-9956-ffa450edef68
2009-06-11 08:06:05 +00:00
37ee8dbfe6
renamed Dense{Real/Field}Matrix into Block{Real/Field}Matrix
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as suggested by Phil in http://markmail.org/message/iibgiz4bsv6hjjvh
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783678 13f79535-47bb-0310-9956-ffa450edef68
2009-06-11 08:05:24 +00:00
9d4fb6760b
prevent too small (sometimes exactly 0) steps to occur
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when an event is within convergence tolerance to the step end
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783529 13f79535-47bb-0310-9956-ffa450edef68
2009-06-10 21:44:33 +00:00
b63d261b54
fixed a forgotten field in copy constructor
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783516 13f79535-47bb-0310-9956-ffa450edef68
2009-06-10 20:58:29 +00:00
ed2301fb81
fixed checkstyle errors
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783114 13f79535-47bb-0310-9956-ffa450edef68
2009-06-09 19:43:55 +00:00
a70c0de4a2
added support for max number of evaluations to ODE integrators
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783103 13f79535-47bb-0310-9956-ffa450edef68
2009-06-09 19:33:19 +00:00
23055a70ce
removed unneeded import
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783044 13f79535-47bb-0310-9956-ffa450edef68
2009-06-09 15:36:29 +00:00
d96d9b3b15
removed unneeded import
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@783041 13f79535-47bb-0310-9956-ffa450edef68
2009-06-09 15:34:55 +00:00
d088734d25
Serialization changes for optimization.
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Still need to add junit test, but for this it doesn't look like a blocker.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@782468 13f79535-47bb-0310-9956-ffa450edef68
2009-06-07 21:24:18 +00:00
aaf87073b5
changed again the Adams-Bashforth and Adams-Moulton integrators
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they now both use Nordsieck representation
this is the first really usable implementation, it still integrates only with fixed stepsize,
but thanks to Nordsieck representation they will be improved to adaptive stepsize soon
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@782442 13f79535-47bb-0310-9956-ffa450edef68
2009-06-07 19:19:35 +00:00
677c5e1ab9
removed step interpolator prototype
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@782438 13f79535-47bb-0310-9956-ffa450edef68
2009-06-07 19:15:14 +00:00
2138d3bfba
added serialization test
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changed tests to Junit 4
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@782435 13f79535-47bb-0310-9956-ffa450edef68
2009-06-07 19:13:17 +00:00
6dec8fa07d
improved max errors computations: previously, NaN values induces the error update to be skipped, thus leading to artificially good results
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@782434 13f79535-47bb-0310-9956-ffa450edef68
2009-06-07 19:12:18 +00:00
d2429d337c
updated step interpolators implementations tests to latest interface changes
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@782433 13f79535-47bb-0310-9956-ffa450edef68
2009-06-07 19:10:23 +00:00
5124ebc4c2
updated step interpolators implementations to latest interface changes
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@782432 13f79535-47bb-0310-9956-ffa450edef68
2009-06-07 19:08:26 +00:00
7de1b628c6
added a lazy evaluation for step interpolators
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moved the possible exceptions from setInterpolatedTime (which now does almost nothing) to getInterpolatedState and getInterpolatedDerivatives (which now do the evaluations)
renamed an internal function to make sure people overriding it don't forget to set the derivatives
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@782431 13f79535-47bb-0310-9956-ffa450edef68
2009-06-07 19:04:37 +00:00
edb1f394c0
removed a print
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git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@781847 13f79535-47bb-0310-9956-ffa450edef68
2009-06-04 20:18:50 +00:00
Phil Steitz
Luc Maisonobe
William Barker
Sebastian Bazley