Commit Graph

4341 Commits

Author SHA1 Message Date
Thomas Neidhart 16acabd53f [MATH-893] Add new NaNStrategy FAILED, thanks to Patrick Meyer.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407852 13f79535-47bb-0310-9956-ffa450edef68
2012-11-10 17:14:51 +00:00
Thomas Neidhart def7381851 Fix typo.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407848 13f79535-47bb-0310-9956-ffa450edef68
2012-11-10 16:58:59 +00:00
Thomas Neidhart ff96ac9292 [MATH-892] Add new ctor to SpearmansCorrelation, reordering of ctors.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407847 13f79535-47bb-0310-9956-ffa450edef68
2012-11-10 16:51:49 +00:00
Sebastien Brisard a170601629 In the users guide for special functions
- accuracy of current implementation of Beta.logBeta
  - standard deviation of error (in ulps) is now provided for all special
    functions that have already been evaluated.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407594 13f79535-47bb-0310-9956-ffa450edef68
2012-11-09 19:03:28 +00:00
Sebastien Brisard 6687706d44 Script files for the validation of beta.logBeta(double, double)
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407592 13f79535-47bb-0310-9956-ffa450edef68
2012-11-09 18:59:21 +00:00
Gilles Sadowski b76ce72cf0 MATH-887
Removed usage of "protected" fields "cols" and "rows".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407501 13f79535-47bb-0310-9956-ffa450edef68
2012-11-09 15:48:56 +00:00
Gilles Sadowski 4ece62e101 MATH-894
Removed call to "contract" in "addElement".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407485 13f79535-47bb-0310-9956-ffa450edef68
2012-11-09 15:15:11 +00:00
Gilles Sadowski 3456d2a12a MATH-887
Renamed "computeJacobian" to "computeWeightedJacobian" to relect what is
actually done.
Made "setCost" a "protected" method (as it should only be modified according
to the optimum found by the subclass's algorithm (defined in "doOptimize()").


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407478 13f79535-47bb-0310-9956-ffa450edef68
2012-11-09 14:57:10 +00:00
Gilles Sadowski ca08d0e8b1 MATH-887
In "LevenbergMarquardtOptimizer", removed usage of deprecated fields and
methods from its base class.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407467 13f79535-47bb-0310-9956-ffa450edef68
2012-11-09 14:30:49 +00:00
Sebastien Brisard a8045be9dd In shell script RealFunctionValidation.sh, pass command line argument to java
app.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407384 13f79535-47bb-0310-9956-ffa450edef68
2012-11-09 08:50:04 +00:00
Sebastien Brisard e54d3237a3 Typo.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407382 13f79535-47bb-0310-9956-ffa450edef68
2012-11-09 08:47:38 +00:00
Sebastien Brisard a6f3c8e178 Ignore *.dat files, which might be generated by the *.mac Maxima scripts.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407378 13f79535-47bb-0310-9956-ffa450edef68
2012-11-09 08:29:00 +00:00
Sebastien Brisard d177a29813 Properties files to be used with RealFunctionValidation, for functions
Gamma.logGamma and Gamma.gamma.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407377 13f79535-47bb-0310-9956-ffa450edef68
2012-11-09 08:24:16 +00:00
Sebastien Brisard b04b10ca6e Small java application for the accuracy assessment of implementations of real
functions in Commons Math. The accuracy is assessed through comparison with
reference values computed with multi-precision softwares.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407376 13f79535-47bb-0310-9956-ffa450edef68
2012-11-09 08:13:18 +00:00
Gilles Sadowski 37791912c6 "final" keyword.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407037 13f79535-47bb-0310-9956-ffa450edef68
2012-11-08 12:59:07 +00:00
Gilles Sadowski 2ce650bf54 MATH-887
Made "GaussNewtonOptimizer" use the new methods in base class
"AbstractLeastSquaresOptimizer" instead of modifying the (now
deprecated) protected fields.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407034 13f79535-47bb-0310-9956-ffa450edef68
2012-11-08 12:48:54 +00:00
Gilles Sadowski 54cfc6ce0a MATH-887
Deprecated "protected" fields.
Created new methods (that take arguments and return a value) to
replace those that operate on protected fields.
Removed call to deprecated methods in unit tests.
Added public method "setCost" to replace the direct assignment to
a protected field.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1407010 13f79535-47bb-0310-9956-ffa450edef68
2012-11-08 10:50:34 +00:00
Gilles Sadowski b65cad05b9 MATH-887
First steps to enhance encapsulation (goal is to remove the "protected"
fields): used new API (MATH-874).
Replaced explicit loops with matrix operations.
Disabled a unit test that does not pass anymore.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1406010 13f79535-47bb-0310-9956-ffa450edef68
2012-11-05 23:41:05 +00:00
Gilles Sadowski 568404b6eb Typos.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1406008 13f79535-47bb-0310-9956-ffa450edef68
2012-11-05 23:32:15 +00:00
Luc Maisonobe c61b08e546 Fixed naming inconsistencies between Interval and IntervalsSet classes.
JIRA: MATH-890

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1405711 13f79535-47bb-0310-9956-ffa450edef68
2012-11-05 08:43:38 +00:00
Luc Maisonobe 2a41e40c15 Added a method to check points in the Interval class.
JIRA: MATH-889

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1405706 13f79535-47bb-0310-9956-ffa450edef68
2012-11-05 08:00:19 +00:00
Phil Steitz 387e7f9fa9 Reverting changes inadvertently committed in r1405634.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1405635 13f79535-47bb-0310-9956-ffa450edef68
2012-11-04 20:56:37 +00:00
Phil Steitz 6e40b488fd Javadoc fix.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1405634 13f79535-47bb-0310-9956-ffa450edef68
2012-11-04 20:51:21 +00:00
Phil Steitz 0987ae5a20 Added G-test statistics. JIRA: MATH-878. Thanks to Radoslav Tsvetkov and Ted Dunning.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1405620 13f79535-47bb-0310-9956-ffa450edef68
2012-11-04 19:32:35 +00:00
Phil Steitz 1cfa9491a2 Javadoc fixes.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1405409 13f79535-47bb-0310-9956-ffa450edef68
2012-11-03 19:46:41 +00:00
Gilles Sadowski 18360735db Javadoc.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1404085 13f79535-47bb-0310-9956-ffa450edef68
2012-10-31 10:45:09 +00:00
Luc Maisonobe d4b31ce8ff streamlined deserialization of DerivativeStructure
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1403648 13f79535-47bb-0310-9956-ffa450edef68
2012-10-30 09:52:09 +00:00
Gilles Sadowski ea8e5c488d Use the "isSymmetric" utility method from "MatrixUtils" (copied from
"EigenDecomposition" in MATH-884).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1403591 13f79535-47bb-0310-9956-ffa450edef68
2012-10-30 00:38:44 +00:00
Gilles Sadowski 06c63da6c7 MATH-883
Added "getSquareRoot()" method. Implementation only supports symmetric,
diagonalizable matrices.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1403590 13f79535-47bb-0310-9956-ffa450edef68
2012-10-30 00:29:06 +00:00
Gilles Sadowski 4d12f0ca68 MATH-884
Added methods "isSymmetric" and "checkSymmetric".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1403587 13f79535-47bb-0310-9956-ffa450edef68
2012-10-30 00:21:20 +00:00
Phil Steitz e0f7ce9c7c Moved array argument validation methods from ChiSquareTest to MathArrays. JIRA: MATH-885.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1403169 13f79535-47bb-0310-9956-ffa450edef68
2012-10-29 04:06:14 +00:00
Thomas Neidhart 6f50c9e55d Completed javadoc.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1402800 13f79535-47bb-0310-9956-ffa450edef68
2012-10-27 14:31:26 +00:00
Gilles Sadowski 41aa1c40fd Removed quasi-duplicate code.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1402716 13f79535-47bb-0310-9956-ffa450edef68
2012-10-26 23:37:32 +00:00
Gilles Sadowski 4fe86d82eb MATH-874
I forgot to "svn add" classes (in revision 1402607).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1402611 13f79535-47bb-0310-9956-ffa450edef68
2012-10-26 18:27:34 +00:00
Gilles Sadowski d0d4760c97 MATH-874
First steps to upgrade the API of the classes in "o.a.c.m.optimization.general".
Please note the introduction of a "Weight" matrix (whereas the current code
assumes that the weights are given as an array).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1402607 13f79535-47bb-0310-9956-ffa450edef68
2012-10-26 18:19:40 +00:00
Gilles Sadowski 2796e77e2e MATH-874
Reduced number of overridden public "optimize" methods (replaced by protected
"optimizeInternal"): whenever the code is ready for 4.0, only the base class's
"optimize" method should define the public API (subclass specifics are handled
in overridden "optimizeInternal" which must call the base class's version to
handle the common setup).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401928 13f79535-47bb-0310-9956-ffa450edef68
2012-10-25 00:20:24 +00:00
Gilles Sadowski 8964c7aa09 Updated "changes" file.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401906 13f79535-47bb-0310-9956-ffa450edef68
2012-10-24 22:38:25 +00:00
Gilles Sadowski e0426dfbfb MATH-816
Using different seeds for the component distributions to avoid getting
the same sequence of random numbers for all of them. Update to the
"testSampling" unit test contributed by Jared Becksfort.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401894 13f79535-47bb-0310-9956-ffa450edef68
2012-10-24 21:27:44 +00:00
Luc Maisonobe f5765cf99d Use the new differentation API for all optimizers.
The older API is still supported as of version 3.1, but is implemented
by wrapping the user function into the new API and then calling the new
code.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401838 13f79535-47bb-0310-9956-ffa450edef68
2012-10-24 19:40:08 +00:00
Luc Maisonobe 7b5a64c0bb Added converters for multivariate functions.
The converters allow to convert back and forth between the older
and the newer differentiation API. They are considered temporary methods
for version 3.1 and will be removed in 4.0 as only the new API will
remain.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401837 13f79535-47bb-0310-9956-ffa450edef68
2012-10-24 19:39:45 +00:00
Thomas Neidhart 3bae991455 Added missing closing action tag.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401451 13f79535-47bb-0310-9956-ffa450edef68
2012-10-23 20:35:04 +00:00
Thomas Neidhart 477104bd09 Fix spelling.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401416 13f79535-47bb-0310-9956-ffa450edef68
2012-10-23 19:30:09 +00:00
Sebastien Brisard db51254b40 Reverted changes inadvertently commited in r1401171.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401172 13f79535-47bb-0310-9956-ffa450edef68
2012-10-23 06:08:32 +00:00
Sebastien Brisard 9dffcfd3be Maxima scripts to generate reference values for the gamma and logGamma
functions.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401171 13f79535-47bb-0310-9956-ffa450edef68
2012-10-23 06:04:09 +00:00
Luc Maisonobe 6d5763c539 Removed unused exception.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401034 13f79535-47bb-0310-9956-ffa450edef68
2012-10-22 19:32:03 +00:00
Luc Maisonobe 2a9cbbab46 Finalized fix for MATH-880.
This version should be much more robust on polygons computation than the
earlier ones. Note that the hyperplaneThickness parameter is a key
tuning parameter in difficult cases like the one involved in the issue.
As shown in the corresponding unit test, the value had to be raised to
1.0e-8 in order for the test to pass correctly.

JIRA: MATH-880

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401022 13f79535-47bb-0310-9956-ffa450edef68
2012-10-22 19:21:36 +00:00
Thomas Neidhart c2e855d6a0 [MATH-759] add resolution to changes.xml.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401000 13f79535-47bb-0310-9956-ffa450edef68
2012-10-22 18:47:33 +00:00
Gilles Sadowski 3b6bbf6d2c Javadoc.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400881 13f79535-47bb-0310-9956-ffa450edef68
2012-10-22 13:57:26 +00:00
Gilles Sadowski 7096dabffa MATH-854
Fill "throw" clauses.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400850 13f79535-47bb-0310-9956-ffa450edef68
2012-10-22 11:57:17 +00:00
Luc Maisonobe b25f448d2f Improved polygons creation with a numerically more robust constructor.
This is only a partial fix for issue 880 because there are still some
glitches in the first polygon involved in the issue.

JIRA: MATH-880

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400717 13f79535-47bb-0310-9956-ffa450edef68
2012-10-21 20:08:32 +00:00