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Author SHA1 Message Date
Phil Steitz
4ce932e3cd Exposed second moment. 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@791685 13f79535-47bb-0310-9956-ffa450edef68
 2009-07-07 03:01:34 +00:00
Phil Steitz
832bcda19c Fixed alpha sort of developers. 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@791496 13f79535-47bb-0310-9956-ffa450edef68
 2009-07-06 14:44:40 +00:00
Luc Maisonobe
935eec022d compute state variation avoiding cancellation in a critical subtraction to preserve accuracy 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@791248 13f79535-47bb-0310-9956-ffa450edef68
 2009-07-05 14:06:00 +00:00
Luc Maisonobe
1805ad4cac javadoc 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@791247 13f79535-47bb-0310-9956-ffa450edef68
 2009-07-05 14:02:41 +00:00
Luc Maisonobe
e4a8fdfdf1 Added a check for too few data in linear regression 
JIRA: MATH-279

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@791244 13f79535-47bb-0310-9956-ffa450edef68
 2009-07-05 13:29:37 +00:00
Luc Maisonobe
720a0b2626 added scalar multiply to the Complex class 
JIRA: MATH-277

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@791237 13f79535-47bb-0310-9956-ffa450edef68
 2009-07-05 12:53:13 +00:00
Luc Maisonobe
e4a5900147 fixed package documentation that still referenced mantissa 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@790381 13f79535-47bb-0310-9956-ffa450edef68
 2009-07-01 21:04:20 +00:00
Luc Maisonobe
6d10d47af1 fixed javadoc 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@790380 13f79535-47bb-0310-9956-ffa450edef68
 2009-07-01 21:03:38 +00:00
Luc Maisonobe
c22eec05d3 optimized matrix update loop 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@790374 13f79535-47bb-0310-9956-ffa450edef68
 2009-07-01 20:57:20 +00:00
Luc Maisonobe
5129af7587 fixed another set of warnings identified by recent findbugs versions 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@790372 13f79535-47bb-0310-9956-ffa450edef68
 2009-07-01 20:48:19 +00:00
Luc Maisonobe
c92046ecc9 removed import 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@790370 13f79535-47bb-0310-9956-ffa450edef68
 2009-07-01 20:41:17 +00:00
Luc Maisonobe
121f832ef9 fixed another set of warnings identified by recent findbugs versions 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@790368 13f79535-47bb-0310-9956-ffa450edef68
 2009-07-01 20:31:50 +00:00
Luc Maisonobe
1a303e82db removed tabs 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@790366 13f79535-47bb-0310-9956-ffa450edef68
 2009-07-01 20:29:59 +00:00
Luc Maisonobe
63d0a79ce2 fixed a number of warnings identified by findbugs eclipse plugin version 1.3.9 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@790243 13f79535-47bb-0310-9956-ffa450edef68
 2009-07-01 16:03:28 +00:00
Phil Steitz
1a5345519c Added David Stefka to contributors. 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@789515 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-30 00:46:06 +00:00
Phil Steitz
3c321ba7cb Added GA. 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@789511 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-30 00:40:59 +00:00
Phil Steitz
6dcf0f6a12 Fixed broken javadoc links. 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@789510 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-30 00:37:05 +00:00
Phil Steitz
41fac55fe2 Fixed incorrect javadoc link. 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@789502 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-30 00:16:04 +00:00
Luc Maisonobe
879518c341 fixed a serialization error introduced by yesterday changes 
(sorry for the noise)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@789358 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-29 15:20:22 +00:00
Luc Maisonobe
c7beb702d8 fixed typo 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@789161 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-28 22:01:40 +00:00
Luc Maisonobe
3cb90658a4 simplified and reorganized slightly the Adams integrators class hierarchy 
this will allow a future BDF integrator development for stiff problems

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@789159 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-28 21:56:20 +00:00
Luc Maisonobe
7614049449 changed Nordsieck transformer to an Adams-specific Nordsieck transformer 
the transformer associated with BDF integrator will be quite different

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@789158 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-28 21:54:33 +00:00
Luc Maisonobe
43bc08d7c3 improve both numerical accuracy and speed by using optimized loops 
in reversed row order (i.e. from higher orders to lower orders) directly
on matrix data.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@789157 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-28 21:51:09 +00:00
Luc Maisonobe
b5395fd802 be more precise on return type, we really return a Array2DRowRealMatrix, 
so tell it in case some callers can use this information for optimization
(which is the case for Nordsieck transformers, they will be able to use
customized loops on matrix data for the sake of numerical accuracy)

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@789156 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-28 21:48:15 +00:00
Luc Maisonobe
e1f4ed50ad moved test problems one package up, to prepare their reuse for stiff integrators 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@789155 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-28 21:43:58 +00:00
Luc Maisonobe
e066e3898b added Dimitri to contributors 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@788808 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-26 18:31:48 +00:00
Luc Maisonobe
8e473959fd Added a getCovariance method to singular value decomposition 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@788805 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-26 18:27:57 +00:00
Luc Maisonobe
c8a6ed4c40 added a missing @Override 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@788047 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-24 15:04:42 +00:00
William Barker
fee5df4e6f Add test cases for Serialization of subclasses of Complex 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@787521 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-23 02:35:50 +00:00
Luc Maisonobe
0c9be1c546 fixed TWO_FIFTH value in both Fraction and BigFraction 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@787348 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-22 18:42:11 +00:00
Luc Maisonobe
de64808c29 fixed a forgotten adjustment of integrator setting 
the first integer parameter semantics have changed and the test
was not updated to reflect this, thus leading to test failure

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@787215 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-22 12:20:37 +00:00
William Barker
053b1c4908 Yes, sebb is correct. After running tests, readResolve needs to be visible to subclasses to be used. Since Complex is clearly designed to be subclassed, changing the visiblity. 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@787118 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-22 00:26:09 +00:00
Phil Steitz
072539b502 Made protected fields private. JIRA: MATH-207. 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@787067 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-21 19:04:04 +00:00
Luc Maisonobe
18b2ddb24b fixed Adams-Bashforth order for error control (it is k, not k+1) 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@787052 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-21 17:07:27 +00:00
Luc Maisonobe
5db7c253e1 removed the current point from count in multistep integrators 
updated documentation since now Adams-Bashforth and Adams-Moulton
are adaptive stepsize integrators

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@787050 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-21 17:01:03 +00:00
Phil Steitz
4ee03f09ff Added Spearman's correlation. 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786940 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-21 02:22:09 +00:00
William Barker
b3c7fd661c Restore Serializable to PolynomialFunction 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786936 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-21 01:12:22 +00:00
Phil Steitz
828c863a00 Added ranking subsection. 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786935 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-21 00:58:14 +00:00
William Barker
15c9f02e5c Remove Serializable from some tranient analitics classes. 
Let me know if I've nuked ur favorite one, and I can put it back


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786927 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-20 23:37:47 +00:00
Sebastian Bazley
7f8175d4f6 Fix thread-safety issues 
- code failed to use synch. read
- code could potentially use two different random Generators if another thread changed it

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786918 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-20 22:17:36 +00:00
Phil Steitz
f4275f3371 Made aggregation threadsafe. 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786911 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-20 21:35:32 +00:00
Luc Maisonobe
aa118ca31c removed old maven 1 stuff 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786900 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-20 20:02:27 +00:00
Luc Maisonobe
45786158ab adding missing Apache header 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786890 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-20 19:23:44 +00:00
Luc Maisonobe
b6de8e8e8f documented Adams-Bashforth and Adams-Moulton ODE integrators 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786885 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-20 19:06:55 +00:00
Luc Maisonobe
a4ef3f9941 fixed a warning about a mission serializeVersionUID. 
However, should this really be serializable at all ?

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786883 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-20 18:57:30 +00:00
Luc Maisonobe
4474f96263 removed lots of serialization in ODE 
the only classes/interfaces for which serialization is really important in this package are the step interpolators. The reason for that is that the ContinuousOutputModel is explicitly serializable and contains step interpolators. This allows users to perform integration of any complex model and to save the result of the integration for all integration range by serializing a ContinuousOutputModel instance. This feature is a major one.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786881 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-20 18:53:08 +00:00
Luc Maisonobe
5fc860d2c1 removed serialization for multistart optimizers 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786878 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-20 18:17:32 +00:00
Luc Maisonobe
d8575cde51 changed the Adams-Bashforth and Adams-Moulton multistep integrators to adaptive stepsize. 
this was made possible thanks to the Nordsieck representation of integration state

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786877 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-20 18:15:54 +00:00
Luc Maisonobe
83ec0f9328 completely changed integration start phase: now the starter integrator for 
multistep methods do not advance time anymore, it is interrupted at first step
end and the interpolator is used to reconstruct Nordsieck vector information at
integration start. Then the normal multistep integrators does start also exactly
at integration start and is responsible for all time advancing stuff, including
step handlers and events handlers management.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786875 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-20 18:13:24 +00:00
Luc Maisonobe
8702a27155 simplified arrays allocation and copying 
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@786874 13f79535-47bb-0310-9956-ffa450edef68
 2009-06-20 18:09:16 +00:00