Commit Graph

4110 Commits

Author SHA1 Message Date
Thomas Neidhart bf181a9152 [MATH-777] Added UniformCrossover policy. Thanks for Reid Hochstedler.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1350391 13f79535-47bb-0310-9956-ffa450edef68
2012-06-14 20:37:29 +00:00
Gilles Sadowski 31217dfcb2 Unit test.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1349707 13f79535-47bb-0310-9956-ffa450edef68
2012-06-13 09:30:56 +00:00
Mikkel Meyer Andersen 07d05a070c MATH-790: Patch applied to fix the second overflow issue.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1349372 13f79535-47bb-0310-9956-ffa450edef68
2012-06-12 14:27:56 +00:00
Sebastien Brisard 069590396c MATH-803:
- modified OpenMapRealVector.ebeMultiply() and ebeDivide() to handle
special cases  0d * NaN, 0d * Infinity, 0d / 0d and 0d / NaN.
  - added implementation of isNaN() and isInfinite() to
SparseRealVectorTest.SparseRealVectorTestImpl in order to allow for testing
of OpenMapRealVector.ebeMultiply() and ebeDivide() with mixed types.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348721 13f79535-47bb-0310-9956-ffa450edef68
2012-06-11 05:52:16 +00:00
Gilles Sadowski 6ffc68337f MATH-804
Parameterized "CurveFitter" with the type of the fitting function. Updated subclasses
"PolynomialFitter", "HarmonicFitter", "GaussianFitter" accordingly.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348613 13f79535-47bb-0310-9956-ffa450edef68
2012-06-10 15:12:57 +00:00
Sebastien Brisard a9889607c1 MATH-795
- In RealVectorTest.TestVectorImpl, removed add(RealVector) and
subtract(RealVector), as they prevented testing of default implementations
(provided in the RealVector abstract class).
  - In RealVectorAbstractTest, extracted unit tests for
    + RealVector.add(RealVector),
    + RealVector.subtract(RealVector),
    + RealVector.ebeMultiply(RealVector),
    + RealVector.ebeDivide(RealVector).

These tests fail with OpenMapRealVector. This is identified as a bug (see
MATH-803).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348485 13f79535-47bb-0310-9956-ffa450edef68
2012-06-09 18:59:44 +00:00
Sebastien Brisard e790293f6e MATH-795: in RealVector.add(RealVector) and RealVector.subtract(RealVector)
(default implementation), exceptional cases were not handled properly.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348438 13f79535-47bb-0310-9956-ffa450edef68
2012-06-09 16:00:05 +00:00
Sebastien Brisard ddd5f1a5e9 MATH-802.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348396 13f79535-47bb-0310-9956-ffa450edef68
2012-06-09 13:11:38 +00:00
Sebastien Brisard 534c5fe89f MATH-795: in RealVectorAbstractTest, extracted testIsInfinite() from
testPredicates().


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348228 13f79535-47bb-0310-9956-ffa450edef68
2012-06-08 20:18:10 +00:00
Sebastien Brisard ae57c3dbba MATH-795: in RealVectorAbstractTest, extracted testIsNaN() from
testPredicates().


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348225 13f79535-47bb-0310-9956-ffa450edef68
2012-06-08 20:10:49 +00:00
Sebastien Brisard a1469c73be MATH-795: in RealVectorAbstractTest, added unit tests for
RealVector.setSubVector(int, RealVector).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348211 13f79535-47bb-0310-9956-ffa450edef68
2012-06-08 19:56:42 +00:00
Mikkel Meyer Andersen 33169dcf75 MATH-790: Patch applied to fix the overflow issue.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348024 13f79535-47bb-0310-9956-ffa450edef68
2012-06-08 11:04:11 +00:00
Mikkel Meyer Andersen a40ad8af53 MATH-774: Fixed documentation to described the actual sampling algorithms used
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348020 13f79535-47bb-0310-9956-ffa450edef68
2012-06-08 10:47:59 +00:00
Mikkel Meyer Andersen e157ce5541 MATH-774: Gamma Distribution override inversion sampling with nextGamma-implementation from oacm.random
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1348015 13f79535-47bb-0310-9956-ffa450edef68
2012-06-08 10:41:49 +00:00
Sebastien Brisard 290224dce3 MATH-795: extracted
- testSubVectorInvalidIndex1(),
  - testSubVectorInvalidIndex2(),
  - testSubVectorInvalidIndex3(),
  - testSubVectorInvalidIndex4()
from RealVectorAbstractTest.testDataInOut(). This test revealed that
positivity of the number of elements was not checked for in
RealVector.getSubVector(int, int).

This is corrected, and a NotPositiveException is now thrown (corresponding
error message has been added to LocalizedFormats).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347883 13f79535-47bb-0310-9956-ffa450edef68
2012-06-08 05:50:11 +00:00
Sebastien Brisard 1d0adbdc72 MATH-795: extracted testGetSubVector() from
RealVectorAbstractTest.testDataInOut().


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347877 13f79535-47bb-0310-9956-ffa450edef68
2012-06-08 03:24:01 +00:00
Sebastien Brisard 32a9299389 MATH-795: RealVectorTest.testAddToEntryInvalidIndex1() and
RealVectorTest.testAddToEntryInvalidIndex2() revealed a bug in
ArrayRealVector.addToEntry(int, double) (method used to throw wrong type of
exception).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347717 13f79535-47bb-0310-9956-ffa450edef68
2012-06-07 17:10:48 +00:00
Sebastien Brisard fcfe0a0644 MATH-795: splitted tests for
- RealVector.setEntry(int, double),
  - RealVector.addToEntry(int, double).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347401 13f79535-47bb-0310-9956-ffa450edef68
2012-06-07 05:45:44 +00:00
Sebastien Brisard 00bc945db4 MATH-795:
- added in RealVectorAbstractTest tests for RealVector.getEntry()
preconditions,
  - modified exceptions thrown in RealVectorTest.TestVectorImpl accordingly.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347395 13f79535-47bb-0310-9956-ffa450edef68
2012-06-07 05:22:52 +00:00
Sebastien Brisard 3a7911512f In TestUtils, improved handling of error messages for
- assertEquals(String, double[], RealVector, double),
  - assertEquals(String, RealVector, RealVector, double).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347393 13f79535-47bb-0310-9956-ffa450edef68
2012-06-07 05:12:46 +00:00
Sebastien Brisard ca70b29dd7 Utility method for testing for equality of expected double[] with RealVector.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347392 13f79535-47bb-0310-9956-ffa450edef68
2012-06-07 05:05:33 +00:00
Gilles Sadowski 3e83661989 MATH-800
Updated userguide and added unit test.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347211 13f79535-47bb-0310-9956-ffa450edef68
2012-06-06 23:48:49 +00:00
Gilles Sadowski 6525baf194 MATH-800
Deprecated "PolynomialFitter" and adapted unit test to use "CurveFitter"
directly.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1347184 13f79535-47bb-0310-9956-ffa450edef68
2012-06-06 22:33:42 +00:00
Sebastien Brisard 60c60e05f8 MATH-795: in RealVectorAbstractTest
- defined class variables data1 and data2 for the creation of test vectors.
Attention has been paid to "special" values, which are interspersed with
"normal" values (see e.g. sparse vectors).
  - created testGetDimension().
  - created testGetEntry().


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346741 13f79535-47bb-0310-9956-ffa450edef68
2012-06-06 05:41:21 +00:00
Sebastien Brisard a37a9384f1 MATH-795:
- some methods are not implemented by RealVector, so they should not be
tested: added @Ignore annotations in RealVectorTest.
  - in RealVectorAbstractTest, extracted
    + testAppendVector()
    + testAppendScalar()
from testDataInOut().


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346740 13f79535-47bb-0310-9956-ffa450edef68
2012-06-06 05:21:18 +00:00
Sebastien Brisard 1214de50cd MATH-795: in RealVectorAbstractTest, added method getPreferredEntryValue()
which allows testing vectors with some entries set to a preferred value (e.g. 0
for sparse vectors).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346729 13f79535-47bb-0310-9956-ffa450edef68
2012-06-06 03:56:02 +00:00
Sebastien Brisard 8d8ede74b5 MATH-795: removed unused imports.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346725 13f79535-47bb-0310-9956-ffa450edef68
2012-06-06 03:23:39 +00:00
Sebastien Brisard 3f83d10d68 MATH-795: factored out
- testCombineToSelfPreconditionSameType()
  - testCombineToSelfSameType()
  - testCombineToSelfPreconditionMixeType()
  - testCombineToSelfMixedTypes()


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346723 13f79535-47bb-0310-9956-ffa450edef68
2012-06-06 03:19:18 +00:00
Sebastien Brisard 5a4f0a8171 MATH-795: factored out
- testCombinePreconditionSameType()
  - testCombineSameType()
  - testCombinePreconditionMixedType()
  - testCombineMixedTypes()


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346523 13f79535-47bb-0310-9956-ffa450edef68
2012-06-05 18:46:29 +00:00
Luc Maisonobe 118e94b5e9 Fixed a problem when building rotations from two pairs of vectors.
In very rare cases, due to numerical inaccuracies the computed quaternion
was not normalized (some examples went as high as 1.0e8) and even after
normalization, the quaternion was plain wrong.

JIRA: MATH-801

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346513 13f79535-47bb-0310-9956-ffa450edef68
2012-06-05 18:26:02 +00:00
Sebastien Brisard 09d7f9a7b8 MATH-795: factored out testCosinePrecondition1(), testCosinePrecondition2() and
testCosinePrecondition3().


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346475 13f79535-47bb-0310-9956-ffa450edef68
2012-06-05 17:11:15 +00:00
Sebastien Brisard 0f9932a5c5 MATH-795: factored out testCosine().
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346471 13f79535-47bb-0310-9956-ffa450edef68
2012-06-05 17:08:20 +00:00
Sebastien Brisard 1d9b3006bf MATH-795: factored out testMinMax().
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346467 13f79535-47bb-0310-9956-ffa450edef68
2012-06-05 17:01:57 +00:00
Sebastien Brisard ce5671bfb0 MATH-795: factored out testAddToEntry().
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346245 13f79535-47bb-0310-9956-ffa450edef68
2012-06-05 05:45:41 +00:00
Sebastien Brisard 6d5b6eb0d1 MATH-795
- Factored out testSerial().
  - In RealVectorTest, the vector returned by create(double[]) should really be
of type RealVectorTest.TestVectorImpl, as the minimal implementation is to be
tested. This causes some tests not to pass, they are skipped for the time
being (overriden from RealVectorAbstractTest, without @Test annotation). When
the tests in RealVectorAbstractTest are split, only the smaller tests which do
not make sense in the present context will be skipped.
  - In RealVectorTest, the constructor of RealVectorTest.TestVectorImpl now
makes a defensive copy of the specified double[] array (see Javadoc of
    + RealVectorAbstractTest.create(double[]),
    + RealVectorAbstractTest.createAlien(double[]).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346243 13f79535-47bb-0310-9956-ffa450edef68
2012-06-05 05:37:37 +00:00
Sebastien Brisard a222b6b3ac MATH-795: factoring out testPredicates().
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1346240 13f79535-47bb-0310-9956-ffa450edef68
2012-06-05 05:10:55 +00:00
Sebastien Brisard ca6583feb8 MATH-795: factored out testOuterProduct() and testMisc().
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1345837 13f79535-47bb-0310-9956-ffa450edef68
2012-06-04 05:40:33 +00:00
Gilles Sadowski 8987aa0cfe MATH-799
Deprecated default values for thresholds, and constructors that use
them. Scheduled for removal in CM 4.0.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1345803 13f79535-47bb-0310-9956-ffa450edef68
2012-06-03 23:24:43 +00:00
Gilles Sadowski 290002cb88 MATH-798
Test case provided by the reporter, adapted to become a unit test, shows
that the same convergence criterion generates a very similar solution by
both "LevenbergMarquardtOptimizer" and "GaussNewtonOptimizer".



git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1345538 13f79535-47bb-0310-9956-ffa450edef68
2012-06-02 17:53:05 +00:00
Sebastien Brisard bbf926511f In LocalizedFormats, removed ALPHA and BETA which are no longer used (MATH-796).
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1345472 13f79535-47bb-0310-9956-ffa450edef68
2012-06-02 09:46:23 +00:00
Sebastien Brisard 9b78d1ed4c MATH-795: factored out testBasicFunctions().
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1345443 13f79535-47bb-0310-9956-ffa450edef68
2012-06-02 05:34:40 +00:00
Luc Maisonobe e0885ee01f Replaced Characterization by an internal class in AbstractRegion.
Note that the suppresses class was a package private one and did not
belong to the public API. It was used only when building the boundaries
in the AbstractRegion class. The change simplifies the package and makes
better use of the existing visitor pattern.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1345328 13f79535-47bb-0310-9956-ffa450edef68
2012-06-01 20:02:04 +00:00
Sebastien Brisard 06c509b3b8 MATH-795: factored out testMapFunctions.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1344989 13f79535-47bb-0310-9956-ffa450edef68
2012-06-01 05:31:47 +00:00
Thomas Neidhart 47635bdb4a [MATH-644] added unit test.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1344943 13f79535-47bb-0310-9956-ffa450edef68
2012-05-31 23:55:12 +00:00
Thomas Neidhart 8ed5527ee0 [MATH-644] added fix to changes.xml.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1344941 13f79535-47bb-0310-9956-ffa450edef68
2012-05-31 23:38:16 +00:00
Thomas Neidhart a567246d1e [MATH-644] cleanup of HypergeometricDistribution and symmetry fix for upperCumulativeProbability, reported by marzieh.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1344940 13f79535-47bb-0310-9956-ffa450edef68
2012-05-31 23:34:46 +00:00
Sebastien Brisard ebb3d84410 Added MATH-791 to the list of changes.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1344574 13f79535-47bb-0310-9956-ffa450edef68
2012-05-31 06:13:33 +00:00
Sebastien Brisard 0fa29579f5 MATH-795: factored out testDataInOut().
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1344571 13f79535-47bb-0310-9956-ffa450edef68
2012-05-31 05:51:16 +00:00
Sebastien Brisard a25ccdc4e6 ArrayRealVector.getEntry(int) did not throw the expected when called with an
invalid index.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1344570 13f79535-47bb-0310-9956-ffa450edef68
2012-05-31 05:49:03 +00:00
Luc Maisonobe 30c4a5bea5 Yet another attempt at computing hash for OrederedTuple.
JIRA: MATH-793

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1344166 13f79535-47bb-0310-9956-ffa450edef68
2012-05-30 09:22:58 +00:00