2014-12-22 12:03:02 -05:00
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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2023-02-09 09:35:33 -05:00
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xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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2014-05-27 18:52:46 -04:00
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<modelVersion>4.0.0</modelVersion>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir</artifactId>
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2024-09-27 10:45:39 -04:00
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<version>7.4.3-SNAPSHOT</version>
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2023-04-02 11:50:20 -04:00
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2014-05-27 18:52:46 -04:00
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<relativePath>../pom.xml</relativePath>
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</parent>
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<artifactId>hapi-fhir-jpaserver-uhnfhirtest</artifactId>
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2023-05-15 08:28:55 -04:00
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<packaging>jar</packaging>
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2014-05-27 18:52:46 -04:00
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2014-07-15 18:36:13 -04:00
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<name>HAPI FHIR - fhirtest.uhn.ca Deployable WAR</name>
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2014-05-27 18:52:46 -04:00
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<dependencies>
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2016-12-28 17:02:08 -05:00
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<dependency>
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<groupId>org.postgresql</groupId>
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<artifactId>postgresql</artifactId>
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2014-10-24 15:43:35 -04:00
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</dependency>
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2022-02-22 09:48:57 -05:00
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2014-10-24 15:43:35 -04:00
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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2017-08-13 14:39:47 -04:00
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<artifactId>hapi-fhir-jpaserver-base</artifactId>
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2017-01-29 13:22:28 -05:00
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<version>${project.version}</version>
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2014-05-27 18:52:46 -04:00
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</dependency>
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2014-12-21 18:13:37 -05:00
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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2015-02-06 15:50:29 -05:00
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<artifactId>hapi-fhir-structures-dstu2</artifactId>
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2017-01-29 13:22:28 -05:00
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<version>${project.version}</version>
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2014-12-21 18:13:37 -05:00
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</dependency>
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2015-07-18 15:29:24 -04:00
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
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2017-01-29 13:22:28 -05:00
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<version>${project.version}</version>
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2015-07-18 15:29:24 -04:00
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</dependency>
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2014-07-02 08:57:07 -04:00
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-testpage-overlay</artifactId>
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2017-01-29 13:22:28 -05:00
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<version>${project.version}</version>
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2014-07-02 08:57:07 -04:00
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<type>war</type>
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2014-12-22 12:03:02 -05:00
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<scope>provided</scope>
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2014-07-02 08:57:07 -04:00
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</dependency>
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2015-09-30 08:31:38 -04:00
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-testpage-overlay</artifactId>
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2017-01-29 13:22:28 -05:00
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<version>${project.version}</version>
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2015-09-30 08:31:38 -04:00
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<classifier>classes</classifier>
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</dependency>
|
2023-02-09 09:35:33 -05:00
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-server-openapi</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-jpaserver-ips</artifactId>
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<version>${project.version}</version>
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</dependency>
|
2023-07-21 18:51:23 -04:00
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<dependency>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-jpaserver-hfql</artifactId>
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<version>${project.version}</version>
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</dependency>
|
2014-07-02 08:57:07 -04:00
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-web</artifactId>
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</dependency>
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2014-12-22 12:03:02 -05:00
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2014-05-27 18:52:46 -04:00
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<dependency>
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<groupId>org.thymeleaf</groupId>
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<artifactId>thymeleaf</artifactId>
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</dependency>
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<dependency>
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<groupId>ch.qos.logback</groupId>
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<artifactId>logback-classic</artifactId>
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</dependency>
|
2014-07-02 08:57:07 -04:00
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<dependency>
|
2014-12-22 12:03:02 -05:00
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<groupId>org.slf4j</groupId>
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<artifactId>jcl-over-slf4j</artifactId>
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2014-07-02 08:57:07 -04:00
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</dependency>
|
2014-07-18 17:49:14 -04:00
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<dependency>
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<groupId>org.slf4j</groupId>
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<artifactId>slf4j-api</artifactId>
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</dependency>
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2014-12-22 12:03:02 -05:00
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2014-05-27 18:52:46 -04:00
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<dependency>
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<groupId>com.google.guava</groupId>
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<artifactId>guava</artifactId>
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</dependency>
|
2014-07-02 08:57:07 -04:00
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2014-05-27 18:52:46 -04:00
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<dependency>
|
2023-12-03 11:15:37 -05:00
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<groupId>jakarta.servlet</groupId>
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<artifactId>jakarta.servlet-api</artifactId>
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2014-05-27 18:52:46 -04:00
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<scope>provided</scope>
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</dependency>
|
2014-07-02 08:57:07 -04:00
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<!-- TEST DEPS -->
|
2022-02-22 09:48:57 -05:00
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<dependency>
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<groupId>com.h2database</groupId>
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<artifactId>h2</artifactId>
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<scope>test</scope>
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</dependency>
|
2020-11-18 14:26:37 -05:00
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<dependency>
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<groupId>org.apache.jena</groupId>
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<artifactId>apache-jena-libs</artifactId>
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<type>pom</type>
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<exclusions>
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<exclusion>
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|
|
|
<groupId>com.github.jsonld-java</groupId>
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|
|
|
<artifactId>jsonld-java</artifactId>
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|
|
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</exclusion>
|
|
|
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</exclusions>
|
|
|
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</dependency>
|
|
|
|
|
2014-12-23 14:10:53 -05:00
|
|
|
<!--
|
2014-07-02 08:57:07 -04:00
|
|
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<dependency>
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|
|
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<groupId>commons-dbcp</groupId>
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|
|
|
<artifactId>commons-dbcp</artifactId>
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|
|
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<version>1.4</version>
|
|
|
|
</dependency>
|
2014-12-23 14:10:53 -05:00
|
|
|
-->
|
|
|
|
<dependency>
|
|
|
|
<groupId>org.apache.commons</groupId>
|
|
|
|
<artifactId>commons-dbcp2</artifactId>
|
|
|
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</dependency>
|
2018-01-29 13:10:05 -05:00
|
|
|
<dependency>
|
|
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
|
|
<artifactId>hapi-fhir-converter</artifactId>
|
2021-05-19 09:22:11 -04:00
|
|
|
<version>${project.version}</version>
|
2018-01-29 13:10:05 -05:00
|
|
|
</dependency>
|
2014-12-22 12:03:02 -05:00
|
|
|
|
2023-12-03 11:15:37 -05:00
|
|
|
<dependency>
|
|
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
|
|
<artifactId>hapi-fhir-test-utilities</artifactId>
|
|
|
|
<scope>test</scope>
|
|
|
|
<version>${project.version}</version>
|
|
|
|
</dependency>
|
|
|
|
|
2014-05-27 18:52:46 -04:00
|
|
|
</dependencies>
|
|
|
|
|
2016-05-07 14:24:33 -04:00
|
|
|
|
2014-05-27 18:52:46 -04:00
|
|
|
<build>
|
|
|
|
<pluginManagement>
|
|
|
|
<plugins>
|
2016-05-07 14:24:33 -04:00
|
|
|
<plugin>
|
|
|
|
<groupId>org.eclipse.jetty</groupId>
|
|
|
|
<artifactId>jetty-maven-plugin</artifactId>
|
|
|
|
<configuration>
|
|
|
|
<webApp>
|
|
|
|
<contextPath>/</contextPath>
|
|
|
|
<allowDuplicateFragmentNames>true</allowDuplicateFragmentNames>
|
|
|
|
</webApp>
|
|
|
|
</configuration>
|
|
|
|
</plugin>
|
2014-12-22 12:03:02 -05:00
|
|
|
<!--This plugin's configuration is used to store Eclipse m2e settings
|
|
|
|
only. It has no influence on the Maven build itself. -->
|
2014-07-03 08:51:42 -04:00
|
|
|
<plugin>
|
|
|
|
<groupId>org.eclipse.m2e</groupId>
|
|
|
|
<artifactId>lifecycle-mapping</artifactId>
|
|
|
|
<version>1.0.0</version>
|
|
|
|
<configuration>
|
|
|
|
<lifecycleMappingMetadata>
|
|
|
|
<pluginExecutions>
|
|
|
|
<pluginExecution>
|
|
|
|
<pluginExecutionFilter>
|
|
|
|
<groupId></groupId>
|
|
|
|
<artifactId></artifactId>
|
|
|
|
<versionRange>[0.4,)</versionRange>
|
|
|
|
<goals>
|
|
|
|
<goal></goal>
|
|
|
|
</goals>
|
|
|
|
</pluginExecutionFilter>
|
|
|
|
<action>
|
|
|
|
<ignore></ignore>
|
|
|
|
</action>
|
|
|
|
</pluginExecution>
|
|
|
|
</pluginExecutions>
|
|
|
|
</lifecycleMappingMetadata>
|
|
|
|
</configuration>
|
2014-05-27 18:52:46 -04:00
|
|
|
</plugin>
|
|
|
|
</plugins>
|
|
|
|
</pluginManagement>
|
|
|
|
<plugins>
|
Rel 6 10 mb (#5474)
* Allow cached search with consent active when safe (#5387)
Allow the search cache when using consent if safe
* Change package installation behaviour such that it updates the existing SearchParameter base with remaining resources (#5376)
* Change package installation behavior such that it updates the existing SearchParameter base with remaining resources
* Change package installation behavior such that it updates the existing SearchParameter base with remaining resources
* Use resourceType in the package installer output to fix tests. Minor change with resourceType condition. Update changelog description to make it more readable.
* Use resourceType in the package installer output to fix tests. Minor change with resourceType condition. Update changelog description to make it more readable.
* Transaction with conditional update fails if SearchNarrowingInterceptor is registered and Enabled Partitioning (#5389)
* Transaction with conditional update fails if SearchNarrowingInterceptor is registered and Enabled Partitioning - Implementation
* Reverse Chaining searches returns an error when invoked with parameter _lastUpdated. (#5177)
* version bump
* Bump to core release 6.0.22 (#5028)
* Bump to core release 6.0.16
* Bump to core version 6.0.20
* Fix errors thrown as a result of VersionSpecificWorkerContextWrapper
* Bump to core 6.0.22
* Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (#5127)
* dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID
* added changelog
* changed to valid version number
* changed to valid version number, need to be ordered by version number...
* 5123 - Use DEFAULT partition for server-based requests if none specified (#5124)
5123 - Use DEFAULT partition for server-based requests if none specified
* consent remove all suppresses next link in bundle (#5119)
* added FIXME with source of issue
* added FIXME with root cause
* added FIXME with root cause
* Providing solution to the issue and removing fixmes.
* Providing changelog
* auto-formatting.
* Adding new test.
* Adding a new test for standard paging
* let's try this and see if it works...?
* fix tests
* cleanup to trigger a new run
* fixing tests
---------
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
* 5117 MDM Score for No Match Fields Should Not Be Included in Total Score (#5118)
* fix, test, changelog
* fix, test, changelog
---------
Co-authored-by: justindar <justin.dar@smilecdr.com>
* _source search parameter needs to support modifiers (#5095)
_source search parameter needs to support modifiers - added support form :contains, :missing, :above modifiers
* Fix HFQL docs (#5151)
* Expunge operation on codesystem may throw 500 internal error with precondition fail message. (#5156)
* Initial failing test.
* Solution with changelog.
* fixing format.
* Addressing comment from code review.
* fixing failing test.
---------
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
* documentation update (#5154)
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
* Fix hsql jdbc driver deps (#5168)
Avoid non-included classes in jdbc driver dependencies.
* $delete-expunge over 10k resources will now delete all resources (#5144)
* First commit with very rough fix and unit test.
* Refinements to ResourceIdListStep and Batch2DaoSvcImpl. Make LoadIdsStepTest pass. Enhance Batch2DaoSvcImplTest.
* Spotless
* Fix checkstyle errors.
* Fix test failures.
* Minor refactoring. New unit test. Finalize changelist.
* Spotless fix.
* Delete now useless code from unit test.
* Delete more useless code.
* Test pre-commit hook
* More spotless fixes.
* Address most code review feedback.
* Remove use of pageSize parameter and see if this breaks the pipeline.
* Remove use of pageSize parameter and see if this breaks the pipeline.
* Fix the noUrl case by passing an unlimited Pegeable instead. Effectively stop using page size for most databases.
* Deprecate the old method and have it call the new one by default.
* updating documentation (#5170)
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
* _source search parameter modifiers for Subscription matching (#5159)
* _source search parameter modifiers for Subscription matching - test, implementation and changelog
* first fix
* tests and preliminary fixes
* wip, commit before switching to release branch.
* adding capability to handle _lastUpdated in reverse search (_has)
* adding changelog
* applying spotless.
* addressing code review comments.
---------
Co-authored-by: tadgh <garygrantgraham@gmail.com>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com>
Co-authored-by: Ken Stevens <khstevens@gmail.com>
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
Co-authored-by: justindar <justin.dar@smilecdr.com>
Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com>
Co-authored-by: Nathan Doef <n.doef@protonmail.com>
Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com>
Co-authored-by: TipzCM <leif.stawnyczy@gmail.com>
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com>
* Br 20231019 add cr settings for cds hooks (#5394)
* Add settings used in CR CDS Services. Remove config dependency on Spring Boot.
* Add changelog
* Use String.format rather than concat strings
* spotless apply
* Add javadoc
* Upgrade notes for the forced-id change (#5400)
Add upgrade notes for forced-id
* Clean stale search results more aggressively. (#5396)
Use bulk DMA statements when cleaning the search cache.
The cleaner job now works as long as possible until a deadline based on the scheduling frequency.
* bump version of clinical reasoning (#5406)
* Transaction fails if SearchNarrowingInterceptor is registered and Partitioning Enabled - fix cross-tenant requests failure (#5408)
* Transaction with conditional update fails if SearchNarrowingInterceptor is registered and Enabled Partitioning - fix and tests added
* removed unused alias from SQL query of mdm-clear (#5416)
* Issue 5418 support Boolean class return type in BaseInterceptorService (#5421)
* Enable child classes to use Boolean class return type
* spotless
---------
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
* If AutoInflateBinaries is enabled, binaries are created on the disk only for the first resource entry of the bundle (#5420)
* If AutoInflateBinaries is enabled, binaries created on disk by bundled requests are created only for the first resource entry - fix
* Revert "Issue 5418 support Boolean class return type in BaseInterceptorService (#5421)" (#5423)
This reverts commit 4e295a59fb143a2ba54bc44305474096e2acd578.
Co-authored-by: Nathan Doef <nathaniel.doef@smilecdr.com>
* Use new FHIR_ID column for sorting (#5405)
* Sort `_id` using new FHIR_ID column.
* Fix old tests that put client-assigned ids first.
* Better indexing for sort
* Bump core to 6.1.2.2 (#5425)
* Bump core to 6.1.2.1
Patch release that uses https for primary org.hl7.fhir.core package server
* Bump core to 6.1.2.2
* Make sure to return always a value for Boolean class return type. (#5424)
Implement change in a non-disruptive way for overriders
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
* Add non-standard __pid SP for breaking ties cheaply during sorts. (#5428)
Add a non-standard __pid SP.
* Review changes for new _pid SP. (#5430)
Change name to _pid to match our standard and add warning.
* Fix VersionCanonicalizer conversion from R5 into DSTU2 for CapabilityStatement, Parameters and StructuredDefinition (#5432)
* Fix VersionCanonicalizer conversion from R5 into DSTU2 for CapabilityStatement, Parameters and StructuredDefinition.
* Fix spotless issue
* CVEs for 6.10.0 (#5433)
* Bump jetty
* Bump okio-jvm
* 8.2.0 mysql connector
* Jena and elastic bumps
* Fix test
* 5412 post bundle on partition incorrect response.link shown (#5413)
* Initial fix and unit test provided
* spottless check
* Made relevant changes to make solution version agnostic
* relevant logic changes made
* spotless changes made
* New logic added to fix failing test cases
* formatting
* New logic to make the function more robust
* spotless checks
* Left a trailing slash in the tests
* Made relevant test changes and changed logic
* spotless changes
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_10_0/5412-during-partition-fullUrl-not-shown-in-response.yaml
changing changelog
Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com>
* Formatting requirements
---------
Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com>
* Resolve We don't have guaranteed subscription delivery if a resource is too large (#5414)
* first fix
* - added the ability to handle null payload to SubscriptionDeliveringMessageSubscriber and SubscriptionDeliveringEmailSubscriber
- refactored code to reduce repeated code
- cleaned unnecessary comments and reformatted files
* Changed myResourceModifiedMessagePersistenceSvc to be autowired
* removed unused import
* added error handling when inflating the message to email and message subscriber
* reformatted code
* Fixing subscription tests with mocked IResourceModifiedMessagePersistenceSvc
* Changes by gary
* Reformatted file
* fixed failed tests
* implemented test for message and email delivery subscriber. Fixed logical error. Reformatted File.
* - implemented IT
- fixed logical error
- added changelog
* fix for cdr tests, NOTE: this makes the assumption that we will always succeed for inflating the database in the tests that uses SynchronousSubscriptionMatcherInterceptor
* fix for cdr tests, NOTE: this makes the assumption that we will always succeed for inflating the database in the tests that uses SynchronousSubscriptionMatcherInterceptor
* resolve code review comments
* reformatted files
* fixed tests
* Fix for failing IT test in jpaserver-starter (#5435)
Co-authored-by: dotasek <dotasek.dev@gmail.com>
* wip
* Bump jackson databind
* Pin Version
* Ignored duplicate classes
* Updating version to: 6.10.1 post release.
* Fix pom
* Skip remorte nexus
* make release faster
* Updating version to: 6.10.1 post release.
* remove skiptests
---------
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
Co-authored-by: Martha Mitran <martha.mitran@smilecdr.com>
Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com>
Co-authored-by: TynerGjs <132295567+TynerGjs@users.noreply.github.com>
Co-authored-by: dotasek <david.otasek@smilecdr.com>
Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com>
Co-authored-by: Ken Stevens <khstevens@gmail.com>
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
Co-authored-by: justindar <justin.dar@smilecdr.com>
Co-authored-by: Nathan Doef <n.doef@protonmail.com>
Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com>
Co-authored-by: TipzCM <leif.stawnyczy@gmail.com>
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com>
Co-authored-by: Brenin Rhodes <brenin@alphora.com>
Co-authored-by: Justin McKelvy <60718638+Capt-Mac@users.noreply.github.com>
Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: Nathan Doef <nathaniel.doef@smilecdr.com>
Co-authored-by: LalithE <132382565+LalithE@users.noreply.github.com>
Co-authored-by: dotasek <dotasek.dev@gmail.com>
Co-authored-by: markiantorno <markiantorno@gmail.com>
2023-11-22 19:01:31 -05:00
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<plugin>
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<groupId>org.sonatype.plugins</groupId>
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<artifactId>nexus-staging-maven-plugin</artifactId>
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<configuration>
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<skipRemoteStaging>true</skipRemoteStaging>
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<skipLocalStaging>true</skipLocalStaging>
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</configuration>
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</plugin>
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2014-05-27 18:52:46 -04:00
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-deploy-plugin</artifactId>
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<configuration>
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<skip>true</skip>
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</configuration>
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</plugin>
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</plugins>
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2014-05-28 16:07:53 -04:00
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<finalName>hapi-fhir-jpaserver</finalName>
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2014-05-27 18:52:46 -04:00
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</build>
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2023-05-15 08:28:55 -04:00
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<profiles>
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<profile>
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<id>DIST</id>
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<build>
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<plugins>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-war-plugin</artifactId>
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<executions>
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<execution>
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<goals>
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<goal>war</goal>
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</goals>
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</execution>
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</executions>
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<configuration>
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<archive>
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<manifestEntries>
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<Build-Time>${maven.build.timestamp}</Build-Time>
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</manifestEntries>
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</archive>
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<overlays>
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<overlay>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-testpage-overlay</artifactId>
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<excludes>
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<exclude>WEB-INF/classes/**/*.class</exclude>
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</excludes>
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</overlay>
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</overlays>
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</configuration>
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</plugin>
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</plugins>
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</build>
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</profile>
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</profiles>
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2014-05-27 18:52:46 -04:00
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</project>
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