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2016-01-28 11:36:59 -05:00
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<!-- Note: HAPI projects use the "hapi-fhir" POM as their base to provide easy management. You do not need to use this in your own projects, so the "parent" tag
and it's contents below may be removed if you are using this file as a basis for your own project. -->
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-cli</artifactId>
7 2 2 mb (#6160) * Enhance RuleBuilder code to support multiple instances (#5852) * Overhaul bulk export permissions. * Overhaul bulk export permissions. * Small tweak to rule builder. * Cleanup validation. * Cleanup validation. * Code review feedback. * Postgres terminology service hard coded column names migration (#5866) * updating parent pids column name * updating name of the fullTestField Search * updating name of the fullTestField Search * fixing typo. * failing test. * - Moving FullTextField annotation from getter method and adding it to the newly added VC property of the entity; - reverting the name of the FullTextField entity to its previous name of 'myParentPids'; - reverting the name of the lucene index to search on in the terminology service. - updating the changelog; * making spotless happy --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * 5879 back porting fix for issue 5877 (attempting to update a tokenparam with a value greater than 200 characters raises an sqlexception) to release rel_7_2 (#5881) * initial failing test. * solution * adding changelog * spotless * moving changelog from 7_4_0 to 7_2_0 and deleting 7_4_0 folder. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * Expose BaseRequestPartitionHelperSvc validateAndNormalize methods (#5811) * Expose BaseRequestPartitionHelperSvc validate and normalize methods * Compilation errors * change mock test to jpa test * change mock test to jpa test * validateAndNormalizePartitionIds * validateAndNormalizePartitionNames * validateAndNormalizePartitionIds validation + bug fix * validateAndNormalizePartitionNames validation * fix test * version bump * Ensure a non-numeric FHIR ID doesn't result in a NumberFormatException when processing survivorship rules (#5883) * Add failing test as well as commented out potential solution. * Fix for NumberFormatException. * Add conditional test for survivorship rules. * Spotless. * Add changelog. * Code review feedback. * updating documentation (#5889) * Ensure temp file ends with "." and then suffix. (#5894) * bugfix to https://github.com/hapifhir/hapi-fhir-jpaserver-starter/issues/675 (#5892) Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com> * Enhance mdm interceptor (#5899) * Add MDM Transaction Context for further downstream processing giving interceptors a better chance of figuring out what happened. * Added javadoc * Cahngelog * spotless --------- Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com> * Fix BaseHapiFhirResourceDao $meta method to use HapiTransactionService instead of @Transaction (#5896) * Try making ResourceTable.myTags EAGER instead of LAZY and see if it breaks anything. * Try making ResourceTable.myTags EAGER instead of LAZY and see if it breaks anything. * Ensure BaseHapiFhirResourceDao#metaGetOperation uses HapiTransactionService instead of @Transactional in order to resolve megascale $meta bug. * Add changelog. * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/7_2_0/5898-ld-megascale-meta-operation-fails-hapi-0389.yaml Commit code reviewer suggestion. Co-authored-by: Tadgh <garygrantgraham@gmail.com> --------- Co-authored-by: Tadgh <garygrantgraham@gmail.com> * Fix query chained on sort bug where we over-filter results (#5903) * Failing test. * Ensure test cleanup doesn't fail by deleting Patients before Practitioners. * Implement fix. * Spotless. * Clean up unit test and add changelog. Fix unit test. * Fix changelog file. * Apply suggestions from code review Apply code review suggestions. Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> * Spotless --------- Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> * cve fix (#5906) Co-authored-by: Long Ma <long@smilecdr.com> * Fixing issues with postgres LOB migration. (#5895) * Fixing issues with postgres LOB migration. * addressing code review comments for audit/transaction logs. * test and implementation for BinaryStorageEntity migration post code review. * test and implementation for BinaryStorageEntity migration post code review. * test and implementation for TermConcept migration post code review. * applying spotless * test and implementation for TermConceptProperty migration post code review. * test and implementation for TermValueSetConcept migration post code review. * fixing migration version * fixing migration task * changelog * fixing changelog * Minor renames * addressing comments and suggestions from second code review. * passing tests * fixing more tests --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: Tadgh <garygrantgraham@gmail.com> * 6051 bulk export security errors (#5915) * Enhance RuleBuilder code to support multiple instances (#5852) * Overhaul bulk export permissions. * Overhaul bulk export permissions. * Small tweak to rule builder. * Cleanup validation. * Cleanup validation. * Code review feedback. * Postgres terminology service hard coded column names migration (#5866) * updating parent pids column name * updating name of the fullTestField Search * updating name of the fullTestField Search * fixing typo. * failing test. * - Moving FullTextField annotation from getter method and adding it to the newly added VC property of the entity; - reverting the name of the FullTextField entity to its previous name of 'myParentPids'; - reverting the name of the lucene index to search on in the terminology service. - updating the changelog; * making spotless happy --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * 5879 back porting fix for issue 5877 (attempting to update a tokenparam with a value greater than 200 characters raises an sqlexception) to release rel_7_2 (#5881) * initial failing test. * solution * adding changelog * spotless * moving changelog from 7_4_0 to 7_2_0 and deleting 7_4_0 folder. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * Expose BaseRequestPartitionHelperSvc validateAndNormalize methods (#5811) * Expose BaseRequestPartitionHelperSvc validate and normalize methods * Compilation errors * change mock test to jpa test * change mock test to jpa test * validateAndNormalizePartitionIds * validateAndNormalizePartitionNames * validateAndNormalizePartitionIds validation + bug fix * validateAndNormalizePartitionNames validation * fix test * version bump * Ensure a non-numeric FHIR ID doesn't result in a NumberFormatException when processing survivorship rules (#5883) * Add failing test as well as commented out potential solution. * Fix for NumberFormatException. * Add conditional test for survivorship rules. * Spotless. * Add changelog. * Code review feedback. * updating documentation (#5889) * Ensure temp file ends with "." and then suffix. (#5894) * bugfix to https://github.com/hapifhir/hapi-fhir-jpaserver-starter/issues/675 (#5892) Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com> * Enhance mdm interceptor (#5899) * Add MDM Transaction Context for further downstream processing giving interceptors a better chance of figuring out what happened. * Added javadoc * Cahngelog * spotless --------- Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com> * Fix BaseHapiFhirResourceDao $meta method to use HapiTransactionService instead of @Transaction (#5896) * Try making ResourceTable.myTags EAGER instead of LAZY and see if it breaks anything. * Try making ResourceTable.myTags EAGER instead of LAZY and see if it breaks anything. * Ensure BaseHapiFhirResourceDao#metaGetOperation uses HapiTransactionService instead of @Transactional in order to resolve megascale $meta bug. * Add changelog. * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/7_2_0/5898-ld-megascale-meta-operation-fails-hapi-0389.yaml Commit code reviewer suggestion. Co-authored-by: Tadgh <garygrantgraham@gmail.com> --------- Co-authored-by: Tadgh <garygrantgraham@gmail.com> * Fix query chained on sort bug where we over-filter results (#5903) * Failing test. * Ensure test cleanup doesn't fail by deleting Patients before Practitioners. * Implement fix. * Spotless. * Clean up unit test and add changelog. Fix unit test. * Fix changelog file. * Apply suggestions from code review Apply code review suggestions. Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> * Spotless --------- Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> * cve fix (#5906) Co-authored-by: Long Ma <long@smilecdr.com> * Fixing issues with postgres LOB migration. (#5895) * Fixing issues with postgres LOB migration. * addressing code review comments for audit/transaction logs. * test and implementation for BinaryStorageEntity migration post code review. * test and implementation for BinaryStorageEntity migration post code review. * test and implementation for TermConcept migration post code review. * applying spotless * test and implementation for TermConceptProperty migration post code review. * test and implementation for TermValueSetConcept migration post code review. * fixing migration version * fixing migration task * changelog * fixing changelog * Minor renames * addressing comments and suggestions from second code review. * passing tests * fixing more tests --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: Tadgh <garygrantgraham@gmail.com> * refactor bulk export rule, add concept of appliestoallpatients, fix tests * spotless * Cahgnelog, tests * more tests * refactor style checks --------- Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com> Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: Nathan Doef <n.doef@protonmail.com> Co-authored-by: TipzCM <leif.stawnyczy@gmail.com> Co-authored-by: dotasek <david.otasek@smilecdr.com> Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com> Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> Co-authored-by: longma1 <32119004+longma1@users.noreply.github.com> Co-authored-by: Long Ma <long@smilecdr.com> * Convert a few nulls to aggressive denies * Change chain sort syntax for MS SQL (#5917) * Change sort type on chains * Change sort type on chains * Test for MS SQL * Comments * Version bump * Updating version to: 7.2.1 post release. * Fix queries with chained sort with Lucene by checking supported SortSpecs (#5958) * First commit with very rough solution. * Solidify solutions for both requirements. Add new tests. Enhance others. * Spotless. * Add new chained sort spec algorithm. Add new Msg.codes. Finalize tests. Update docs. Add changelog. * pom remove the snapshot * Updating version to: 7.2.2 post release. * cherry-picked pr 6051 * changelog fix * cherry-picked 6027 * docs and changelog * merge fix for issue with infinite cache refresh loop * Use lockless mode when adding index on Azure Sql server (#6100) (#6129) * Use lockless mode when adding index on Azure Sql server Use try-catch for Online add-index on Sql Server. This avoids having to map out the entire matrix of Sql Server product names and ONLINE index support. Warnings in docs, and cleanups * added fix for 6133 * failing Test * Add fix * spotless * Remove useless file * Fix claeaner * cleanup * Remove dead class * Changelog * test description * Add test. Fix broken logic. * fix quantity search parameter test to pass * reverted test testDirectPathWholeResourceNotIndexedWorks in FhirResourceDaoR4SearchWithElasticSearchIT * spotless * cleanup mistake during merge * added missing imports * fix more mergeback oopsies * bump to 7.3.13-snapshot --------- Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com> Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: Nathan Doef <n.doef@protonmail.com> Co-authored-by: TipzCM <leif.stawnyczy@gmail.com> Co-authored-by: dotasek <david.otasek@smilecdr.com> Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com> Co-authored-by: Tadgh <garygrantgraham@gmail.com> Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> Co-authored-by: Long Ma <long@smilecdr.com> Co-authored-by: markiantorno <markiantorno@gmail.com>
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<version>7.3.13-SNAPSHOT</version>
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<relativePath>../pom.xml</relativePath>
</parent>
<artifactId>hapi-fhir-cli-app</artifactId>
<packaging>jar</packaging>
<name>HAPI FHIR - Command Line Client - Application</name>
<dependencies>
Squashed commit of the following: commit 2be11651c212ede9d50956ba9d4a802885e9dbed Author: James Agnew <jamesagnew@gmail.com> Date: Thu May 10 11:50:53 2018 -0400 Update changelog commit b3bb5f9052ecebce87588e2d5f5be983fbd0fd2e Author: James Agnew <jamesagnew@gmail.com> Date: Thu May 10 11:19:28 2018 -0400 Parameter updates commit f6b1082ba46f4d0d47d3e0094e904d527b0ebf75 Author: James Agnew <jamesagnew@gmail.com> Date: Thu May 10 07:24:30 2018 -0400 More test fixes commit 81a69c265f7347f6a23c73b827c79a8a4051b21b Author: James Agnew <jamesagnew@gmail.com> Date: Thu May 10 06:26:48 2018 -0400 Fix compile error commit 935938e92c697be1940b788a46c38ffd5ce84b84 Author: James Agnew <jamesagnew@gmail.com> Date: Thu May 10 06:25:18 2018 -0400 Another test fix commit 43568a1f8dd6325bebba2cd47ffb42bee7f12aa6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu May 10 06:18:06 2018 -0400 Fix compile error commit e95894e643dda0a70ab5ab7be4363cae4ce5c4e6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu May 10 06:13:50 2018 -0400 More work on tests commit 9393fb8f4f93e69f80293c0488cc16f74613f25c Author: James Agnew <jamesagnew@gmail.com> Date: Thu May 10 05:36:27 2018 -0400 One more fix commit 437f5051e4742eb500ec1eb1852e4c6105927c51 Author: James Agnew <jamesagnew@gmail.com> Date: Wed May 9 21:32:10 2018 -0400 Work on validator commit 20c51add4fbb5c33d7b5f8517fe9bf9a4f314292 Author: James Agnew <jamesagnew@gmail.com> Date: Wed May 9 19:34:10 2018 -0400 Validator fix commit 7bf2b0a0e93b71f6fbc46ab3b1dbd0fba6367959 Author: James Agnew <jamesagnew@gmail.com> Date: Wed May 9 18:44:04 2018 -0400 Fix test commit adc73e75c9b392ed964588f03970ab1afdb4cdef Author: James Agnew <jamesagnew@gmail.com> Date: Wed May 9 17:22:34 2018 -0400 Merge validator
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<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-cli-api</artifactId>
<version>${project.version}</version>
<type>jar</type>
</dependency>
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<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-testpage-overlay</artifactId>
<version>${project.version}</version>
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<classifier>classes</classifier>
</dependency>
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<!--
<dependency>
<groupId>com.oracle</groupId>
<artifactId>ojbc8g</artifactId>
<version>12.2.0.1</version>
</dependency>
-->
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</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<configuration>
<skip>true</skip>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
<configuration>
<finalName>hapi-fhir-cli</finalName>
<artifactSet>
</artifactSet>
<transformers>
<transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
<mainClass>ca.uhn.fhir.cli.App</mainClass>
</transformer>
</transformers>
<filters>
<filter>
<artifact>*</artifact>
<excludes>
<exclude>**/*.SF</exclude>
<exclude>**/*.RSA</exclude>
</excludes>
</filter>
</filters>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
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</build>
</project>