hapi-fhir/hapi-fhir-jpaserver-uhnfhir.../pom.xml

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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>7.7.0-SNAPSHOT</version>
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<relativePath>../pom.xml</relativePath>
</parent>
<artifactId>hapi-fhir-jpaserver-uhnfhirtest</artifactId>
<packaging>jar</packaging>
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<name>HAPI FHIR - fhirtest.uhn.ca Deployable WAR</name>
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<dependencies>
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<dependency>
<groupId>org.postgresql</groupId>
<artifactId>postgresql</artifactId>
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</dependency>
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<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
Merge in HAPI 3.0.0 working branch! Squashed commit of the following: commit 12f89a423a1691fdbc360706fd94a03bd9144d17 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:38:51 2017 -0400 Minimize validation resources commit f6868cce5c73b34d5ecd53bf1a220fdccd6b4e09 Merge: 3b80779fd3 1e158311d8 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 14:05:34 2017 -0400 Forward port fix for #710 Merge branch 'master' into hapi3_refactor commit 3b80779fd3905cbf5322e6973334eb0ecb3d8426 Merge: 1f534985e8 356d9acaf7 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 12:31:09 2017 -0400 Forward port #705, #708, and #710 Merge branch 'master' into hapi3_refactor commit 1f534985e8106347d9cc9da2dd8145fdd869547f Merge: 7c39a47852 dedd3d635b Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 10:52:59 2017 -0400 Forward port #695 Merge branch 'master' into hapi3_refactor commit 7c39a47852142bee398101120678217ab0917c7e Merge: e0ffb84d21 6efafe62f1 Author: James <jamesagnew@gmail.com> Date: Sun Aug 13 09:53:17 2017 -0400 Forward port #688 Merge branch 'master' into hapi3_refactor commit e0ffb84d2129c209ccffc2611038592f37dddfd2 Merge: 52388c11c1 d19b00ff09 Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 14:59:46 2017 -0400 Merge branch 'master' into hapi3_refactor commit 52388c11c17cf038591244548f2a592f6b655cee Author: James <jamesagnew@gmail.com> Date: Sat Aug 12 06:21:46 2017 -0400 Cleanup commit 209752cd638266b39574ae11c5989b624d5e85d3 Author: James <jamesagnew@gmail.com> Date: Thu Aug 10 11:18:19 2017 -0400 Fix tests commit 4543408dc8d63b5b9682a275e261d3168cdc2196 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:55:50 2017 -0400 Fix a potential deadlock commit ee360f537692672df473f94dae75c176b2287415 Author: James <jamesagnew@gmail.com> Date: Sat Aug 5 06:22:06 2017 -0400 Add R4 code to CLI commit 1a95ba3b6529afdaf81232b82cc303718c0187d6 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Aug 3 06:14:01 2017 -0400 More cleanup commit f0d88026817296edaa65132accd67d0c8ad8088c Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 11:27:43 2017 -0400 Tests are working! commit a4cbda357e8e7d024f24e3ee9a660b5366983ca1 Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:42:04 2017 -0400 Connection handling cleanup for new tests commit 0e2cecfbd0d7a546444a66e8411600040fd9a17b Author: James Agnew <jamesagnew@gmail.com> Date: Wed Aug 2 10:16:28 2017 -0400 Clean up R4 JPA tests commit 40317a650d72c86e2529d5179cffe63399301de5 Author: James <jamesagnew@gmail.com> Date: Wed Aug 2 09:12:38 2017 -0400 Work on R4 for JPA server commit e7f8f8c30d72ed30d739979964db38d41c5baec1 Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 20:43:47 2017 -0400 More work on porting tests commit 43c9003258696ab33e7bb335e882ab1c66fb61aa Author: James <jamesagnew@gmail.com> Date: Tue Aug 1 07:09:29 2017 -0400 Work on porting DSTU1 tests commit 602857f1e26a69a2284e176b5e44a860d9b828ff Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 22:34:08 2017 -0400 More work on bring unit tests up to date commit e326a7b0cdb8368009119bba41886838a973e03e Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:36:38 2017 -0400 Credit for #686 and forward port the fix to R4 validator commit 96543c3992adcb406df3c8899dab79cf4bd5b4b4 Merge: 3fb75aa61a 9901b802c4 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 31 17:12:33 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3fb75aa61ad29d9f3876a1c30c912627486147af Author: James <jamesagnew@gmail.com> Date: Mon Jul 31 15:21:30 2017 -0400 More work on cleanup commit b02fbb6804127e77c61c4792eefd9fc0d23d63d0 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 22:11:07 2017 -0400 Work on porting STU1 tests commit 1ae37b0db3929ea4f37955adf8f026e33ccf43b2 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:56:10 2017 -0400 Try to get coverage report working commit 72b88849b30a94a9ff08d3a1ab50a05b2acbdfdd Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 20:27:02 2017 -0400 Fix android tests commit e5f6c35aeab8bbc056870a038e1862181049a020 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 19:31:18 2017 -0400 More work on getting legacy code cleaned up commit 0b513b0845a082b5c20b0033dfab4e29f5e4a934 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 18:41:13 2017 -0400 Continue work on removing deprecated API commit defea69aa38a2e0f4137ed9c8527956872ff70bf Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 17:10:01 2017 -0400 More cleanup of legacy code commit 9ae7295705cb58f5edcf7ee1259f023cbbe2fe51 Author: James <jamesagnew@gmail.com> Date: Sun Jul 30 07:11:45 2017 -0400 More cleanup of legacy code commit ebd3eeb5ee793cf5805cc726db353f3def35ab00 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jul 30 06:43:25 2017 -0400 More work on removing legacy code commit 92224c2532faf70171473d64429c3ceaf3e3406c Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 18:44:06 2017 -0400 Remove DSTU1 Bundle commit c52cacf71bae3f5c02ffae03881c21de1f3aba22 Author: James <jamesagnew@gmail.com> Date: Sat Jul 29 14:27:42 2017 -0400 Now compiling commit b405e51773baf4ab3a3c387458cdc59541394cd1 Merge: c3ddf04e25 cb2cea54d7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Jul 28 06:21:02 2017 -0400 Merge branch 'master' into hapi3_refactor commit c3ddf04e2598b8d6214975ab0ae795f850396811 Author: James <jamesagnew@gmail.com> Date: Thu Jul 27 11:06:06 2017 -0400 Sync R4 releases in commit b13333c3c03ddb9a5061c3b22bf011f4592104f8 Author: James <jamesagnew@gmail.com> Date: Fri Jul 14 05:52:33 2017 -0400 JPA server is now able to handle placeholder IDs (e.g. urn:uuid:00....000) being used in Bundle.entry.request.url as a part of the conditional URL within transactions. commit 2e60ff7521b42890a32b97c2dda88ab233f5c91e Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 20:02:46 2017 -0400 Fix imports commit a92ace2e0dac6e24f6dada53bf97d03861fd21a1 Merge: 3196db96d1 1a6b3ea867 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 12:02:27 2017 -0400 Merge branch 'master' into hapi3_refactor commit 3196db96d1c485310e746833df59c0e010b5b161 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 13 11:48:10 2017 -0400 Don't add false paging link to request commit bd4e1d338855a664045caa271d41616aed973a4d Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 21:32:16 2017 -0400 Finally building correctly! commit 6464ce9304703cb3c5ecc58491282ddacc900853 Author: James <jamesagnew@gmail.com> Date: Sun Jul 9 16:38:28 2017 -0400 Work on refactor commit 0059f2e48e9d7c812c1d42a57c5b6059814f5155 Author: James <jamesagnew@gmail.com> Date: Sat Jul 8 07:16:20 2017 -0400 Keep working on refactor commit 6c2e87e8cc19863a811c11623d1c878c8b48f031 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 22:35:13 2017 -0400 Lots of work on refactor commit 11cab975047a0c28190e6533074fd3f11ddde240 Merge: 34ec6b8807 6c47bd4c51 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:57 2017 -0400 Merge branch 'master' into hapi3_refactor commit 34ec6b8807946aa6c97f0b5581dca9bd5f7b7a3e Merge: f8e647511b c520e60ac1 Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 21:43:49 2017 -0400 Merge branch 'hapi3_refactor' of github.com:jamesagnew/hapi-fhir into hapi3_refactor commit f8e647511b4a82e7fde71a8850b8800e3d698b1f Author: James Agnew <jamesagnew@gmail.com> Date: Thu Jul 6 18:46:55 2017 -0400 Work on hapi3 changes commit c520e60ac1198f340cfb9090a7a33f91aa2d1e61 Author: James <jamesagnew@gmail.com> Date: Wed Jul 5 08:08:40 2017 -0400 Keep working on refactor commit f1d2ee90926f7db900a5b3b4ab9a8948d18e49f2 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 22:10:59 2017 -0400 Continue refactor for HAPI 3 commit 9281ccafc32354222932c5a9f5ee8b0f206ebc05 Merge: ea1264cd8e 294d080bd3 Author: James Agnew <jamesagnew@gmail.com> Date: Mon Jul 3 20:34:16 2017 -0400 Merge branch 'master' into hapi3_refactor commit ea1264cd8e9b8c5297d218e91cf14bd48d0a92c7 Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 10:26:01 2017 -0400 Continue work on refactor commit fbe2f98a0238f3d4e065db4550dd2ef1b460c0d8 Merge: b2bef47100 0a4dcc32ec Author: James <jamesagnew@gmail.com> Date: Wed Jun 28 06:21:22 2017 -0400 Merge branch 'master' into hapi3_refactor commit b2bef47100370e1248834523d73a630950032d7a Author: James <jamesagnew@gmail.com> Date: Tue Jun 27 21:13:23 2017 -0400 Work on refactor commit 8f76e4e46385daa9ce3442e2d9342453ce373ba3 Author: James Agnew <jamesagnew@gmail.com> Date: Sun Jun 25 21:55:35 2017 -0400 Lots of work on refactoring
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<artifactId>hapi-fhir-jpaserver-base</artifactId>
<version>${project.version}</version>
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</dependency>
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<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-structures-dstu2</artifactId>
<version>${project.version}</version>
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</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
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<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-testpage-overlay</artifactId>
<version>${project.version}</version>
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<type>war</type>
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<scope>provided</scope>
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</dependency>
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<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-testpage-overlay</artifactId>
<version>${project.version}</version>
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<classifier>classes</classifier>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-server-openapi</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-jpaserver-ips</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-jpaserver-hfql</artifactId>
<version>${project.version}</version>
</dependency>
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<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
</dependency>
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<dependency>
<groupId>org.thymeleaf</groupId>
<artifactId>thymeleaf</artifactId>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
</dependency>
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<dependency>
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<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
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</dependency>
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<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
</dependency>
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<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
</dependency>
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<dependency>
Jakarta/Javax Servlet Migration (#5429) * Servlet migrsation changes * Apply spotless * Work on migration * Start working on JPA migration * Test fixes * Test fixes * Test fixes * Work * Work on servlet migration * Work on migration * Work on fixes * Imports fix * Work on tests * Test fix * All tests passing * Work on migration * Schema generator * Refactor ID strategy * Some test fixes * Test fixes * API additions * Work on websockets * Test fixe * Version bump * Work on migration * All tests have passed! * Work on test fixes * Fixes * Work on fixes * CDR fix * Work on migration * Fixes * Spotless * Disable onetoone ban * Adjust migratyions * Transaction service fix * Add tinyint to migrator * Work * Migration * Compile fix * Add license * Test fix * Test fix * Cleanup * Cleanup attempt * Test fix * Reslve fixmes * Remove legacy lastn implementation * Test cleanup * Cleanup * Remove dead import * Bad import setups * Review comments * Review fixes * Build fix * Test fix * Spotless * Account for CR changes * Compile fixes * Rollback one change * Test tweak * License header * Test fix * Test fix part 2: * Clean up tx isolation * Spotless * Spotless apply * Drop min SQL Server level * Attempted test fix * Test fix * Test fix * Test fix * Bump hibernate * Test fix * Test fixes * Test fixes * Test fixes * Test cleanup * One more test fix * Test fix * Try to fix test * Clean up expunge * Test fix * Remove unneeded task * Spotless * Bump compiler plugin * Spotless * Compile fix * Add license headers * License header * Test fixes * Bump animal sniffer * Spotless * Bump Jetty version * Test fix and version bump * Cleanup --------- Co-authored-by: Tadgh <garygrantgraham@gmail.com>
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<groupId>jakarta.servlet</groupId>
<artifactId>jakarta.servlet-api</artifactId>
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<scope>provided</scope>
</dependency>
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<!-- TEST DEPS -->
<dependency>
<groupId>com.h2database</groupId>
<artifactId>h2</artifactId>
<scope>test</scope>
</dependency>
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<dependency>
<groupId>org.apache.jena</groupId>
<artifactId>apache-jena-libs</artifactId>
<type>pom</type>
<exclusions>
<exclusion>
<groupId>com.github.jsonld-java</groupId>
<artifactId>jsonld-java</artifactId>
</exclusion>
</exclusions>
</dependency>
<!--
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<dependency>
<groupId>commons-dbcp</groupId>
<artifactId>commons-dbcp</artifactId>
<version>1.4</version>
</dependency>
-->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-dbcp2</artifactId>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-converter</artifactId>
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<version>${project.version}</version>
</dependency>
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Jakarta/Javax Servlet Migration (#5429) * Servlet migrsation changes * Apply spotless * Work on migration * Start working on JPA migration * Test fixes * Test fixes * Test fixes * Work * Work on servlet migration * Work on migration * Work on fixes * Imports fix * Work on tests * Test fix * All tests passing * Work on migration * Schema generator * Refactor ID strategy * Some test fixes * Test fixes * API additions * Work on websockets * Test fixe * Version bump * Work on migration * All tests have passed! * Work on test fixes * Fixes * Work on fixes * CDR fix * Work on migration * Fixes * Spotless * Disable onetoone ban * Adjust migratyions * Transaction service fix * Add tinyint to migrator * Work * Migration * Compile fix * Add license * Test fix * Test fix * Cleanup * Cleanup attempt * Test fix * Reslve fixmes * Remove legacy lastn implementation * Test cleanup * Cleanup * Remove dead import * Bad import setups * Review comments * Review fixes * Build fix * Test fix * Spotless * Account for CR changes * Compile fixes * Rollback one change * Test tweak * License header * Test fix * Test fix part 2: * Clean up tx isolation * Spotless * Spotless apply * Drop min SQL Server level * Attempted test fix * Test fix * Test fix * Test fix * Bump hibernate * Test fix * Test fixes * Test fixes * Test fixes * Test cleanup * One more test fix * Test fix * Try to fix test * Clean up expunge * Test fix * Remove unneeded task * Spotless * Bump compiler plugin * Spotless * Compile fix * Add license headers * License header * Test fixes * Bump animal sniffer * Spotless * Bump Jetty version * Test fix and version bump * Cleanup --------- Co-authored-by: Tadgh <garygrantgraham@gmail.com>
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<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-test-utilities</artifactId>
<scope>test</scope>
<version>${project.version}</version>
</dependency>
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</dependencies>
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<build>
<pluginManagement>
<plugins>
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<plugin>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-maven-plugin</artifactId>
<configuration>
<webApp>
<contextPath>/</contextPath>
<allowDuplicateFragmentNames>true</allowDuplicateFragmentNames>
</webApp>
</configuration>
</plugin>
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<!--This plugin's configuration is used to store Eclipse m2e settings
only. It has no influence on the Maven build itself. -->
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<plugin>
<groupId>org.eclipse.m2e</groupId>
<artifactId>lifecycle-mapping</artifactId>
<version>1.0.0</version>
<configuration>
<lifecycleMappingMetadata>
<pluginExecutions>
<pluginExecution>
<pluginExecutionFilter>
<groupId></groupId>
<artifactId></artifactId>
<versionRange>[0.4,)</versionRange>
<goals>
<goal></goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore></ignore>
</action>
</pluginExecution>
</pluginExecutions>
</lifecycleMappingMetadata>
</configuration>
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</plugin>
</plugins>
</pluginManagement>
<plugins>
Rel 6 10 mb (#5474) * Allow cached search with consent active when safe (#5387) Allow the search cache when using consent if safe * Change package installation behaviour such that it updates the existing SearchParameter base with remaining resources (#5376) * Change package installation behavior such that it updates the existing SearchParameter base with remaining resources * Change package installation behavior such that it updates the existing SearchParameter base with remaining resources * Use resourceType in the package installer output to fix tests. Minor change with resourceType condition. Update changelog description to make it more readable. * Use resourceType in the package installer output to fix tests. Minor change with resourceType condition. Update changelog description to make it more readable. * Transaction with conditional update fails if SearchNarrowingInterceptor is registered and Enabled Partitioning (#5389) * Transaction with conditional update fails if SearchNarrowingInterceptor is registered and Enabled Partitioning - Implementation * Reverse Chaining searches returns an error when invoked with parameter _lastUpdated. (#5177) * version bump * Bump to core release 6.0.22 (#5028) * Bump to core release 6.0.16 * Bump to core version 6.0.20 * Fix errors thrown as a result of VersionSpecificWorkerContextWrapper * Bump to core 6.0.22 * Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (#5127) * dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID * added changelog * changed to valid version number * changed to valid version number, need to be ordered by version number... * 5123 - Use DEFAULT partition for server-based requests if none specified (#5124) 5123 - Use DEFAULT partition for server-based requests if none specified * consent remove all suppresses next link in bundle (#5119) * added FIXME with source of issue * added FIXME with root cause * added FIXME with root cause * Providing solution to the issue and removing fixmes. * Providing changelog * auto-formatting. * Adding new test. * Adding a new test for standard paging * let's try this and see if it works...? * fix tests * cleanup to trigger a new run * fixing tests --------- Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> * 5117 MDM Score for No Match Fields Should Not Be Included in Total Score (#5118) * fix, test, changelog * fix, test, changelog --------- Co-authored-by: justindar <justin.dar@smilecdr.com> * _source search parameter needs to support modifiers (#5095) _source search parameter needs to support modifiers - added support form :contains, :missing, :above modifiers * Fix HFQL docs (#5151) * Expunge operation on codesystem may throw 500 internal error with precondition fail message. (#5156) * Initial failing test. * Solution with changelog. * fixing format. * Addressing comment from code review. * fixing failing test. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * documentation update (#5154) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * Fix hsql jdbc driver deps (#5168) Avoid non-included classes in jdbc driver dependencies. * $delete-expunge over 10k resources will now delete all resources (#5144) * First commit with very rough fix and unit test. * Refinements to ResourceIdListStep and Batch2DaoSvcImpl. Make LoadIdsStepTest pass. Enhance Batch2DaoSvcImplTest. * Spotless * Fix checkstyle errors. * Fix test failures. * Minor refactoring. New unit test. Finalize changelist. * Spotless fix. * Delete now useless code from unit test. * Delete more useless code. * Test pre-commit hook * More spotless fixes. * Address most code review feedback. * Remove use of pageSize parameter and see if this breaks the pipeline. * Remove use of pageSize parameter and see if this breaks the pipeline. * Fix the noUrl case by passing an unlimited Pegeable instead. Effectively stop using page size for most databases. * Deprecate the old method and have it call the new one by default. * updating documentation (#5170) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * _source search parameter modifiers for Subscription matching (#5159) * _source search parameter modifiers for Subscription matching - test, implementation and changelog * first fix * tests and preliminary fixes * wip, commit before switching to release branch. * adding capability to handle _lastUpdated in reverse search (_has) * adding changelog * applying spotless. * addressing code review comments. --------- Co-authored-by: tadgh <garygrantgraham@gmail.com> Co-authored-by: dotasek <david.otasek@smilecdr.com> Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> Co-authored-by: justindar <justin.dar@smilecdr.com> Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> Co-authored-by: Nathan Doef <n.doef@protonmail.com> Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com> Co-authored-by: TipzCM <leif.stawnyczy@gmail.com> Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com> * Br 20231019 add cr settings for cds hooks (#5394) * Add settings used in CR CDS Services. Remove config dependency on Spring Boot. * Add changelog * Use String.format rather than concat strings * spotless apply * Add javadoc * Upgrade notes for the forced-id change (#5400) Add upgrade notes for forced-id * Clean stale search results more aggressively. (#5396) Use bulk DMA statements when cleaning the search cache. The cleaner job now works as long as possible until a deadline based on the scheduling frequency. * bump version of clinical reasoning (#5406) * Transaction fails if SearchNarrowingInterceptor is registered and Partitioning Enabled - fix cross-tenant requests failure (#5408) * Transaction with conditional update fails if SearchNarrowingInterceptor is registered and Enabled Partitioning - fix and tests added * removed unused alias from SQL query of mdm-clear (#5416) * Issue 5418 support Boolean class return type in BaseInterceptorService (#5421) * Enable child classes to use Boolean class return type * spotless --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * If AutoInflateBinaries is enabled, binaries are created on the disk only for the first resource entry of the bundle (#5420) * If AutoInflateBinaries is enabled, binaries created on disk by bundled requests are created only for the first resource entry - fix * Revert "Issue 5418 support Boolean class return type in BaseInterceptorService (#5421)" (#5423) This reverts commit 4e295a59fb143a2ba54bc44305474096e2acd578. Co-authored-by: Nathan Doef <nathaniel.doef@smilecdr.com> * Use new FHIR_ID column for sorting (#5405) * Sort `_id` using new FHIR_ID column. * Fix old tests that put client-assigned ids first. * Better indexing for sort * Bump core to 6.1.2.2 (#5425) * Bump core to 6.1.2.1 Patch release that uses https for primary org.hl7.fhir.core package server * Bump core to 6.1.2.2 * Make sure to return always a value for Boolean class return type. (#5424) Implement change in a non-disruptive way for overriders Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Add non-standard __pid SP for breaking ties cheaply during sorts. (#5428) Add a non-standard __pid SP. * Review changes for new _pid SP. (#5430) Change name to _pid to match our standard and add warning. * Fix VersionCanonicalizer conversion from R5 into DSTU2 for CapabilityStatement, Parameters and StructuredDefinition (#5432) * Fix VersionCanonicalizer conversion from R5 into DSTU2 for CapabilityStatement, Parameters and StructuredDefinition. * Fix spotless issue * CVEs for 6.10.0 (#5433) * Bump jetty * Bump okio-jvm * 8.2.0 mysql connector * Jena and elastic bumps * Fix test * 5412 post bundle on partition incorrect response.link shown (#5413) * Initial fix and unit test provided * spottless check * Made relevant changes to make solution version agnostic * relevant logic changes made * spotless changes made * New logic added to fix failing test cases * formatting * New logic to make the function more robust * spotless checks * Left a trailing slash in the tests * Made relevant test changes and changed logic * spotless changes * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_10_0/5412-during-partition-fullUrl-not-shown-in-response.yaml changing changelog Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> * Formatting requirements --------- Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> * Resolve We don't have guaranteed subscription delivery if a resource is too large (#5414) * first fix * - added the ability to handle null payload to SubscriptionDeliveringMessageSubscriber and SubscriptionDeliveringEmailSubscriber - refactored code to reduce repeated code - cleaned unnecessary comments and reformatted files * Changed myResourceModifiedMessagePersistenceSvc to be autowired * removed unused import * added error handling when inflating the message to email and message subscriber * reformatted code * Fixing subscription tests with mocked IResourceModifiedMessagePersistenceSvc * Changes by gary * Reformatted file * fixed failed tests * implemented test for message and email delivery subscriber. Fixed logical error. Reformatted File. * - implemented IT - fixed logical error - added changelog * fix for cdr tests, NOTE: this makes the assumption that we will always succeed for inflating the database in the tests that uses SynchronousSubscriptionMatcherInterceptor * fix for cdr tests, NOTE: this makes the assumption that we will always succeed for inflating the database in the tests that uses SynchronousSubscriptionMatcherInterceptor * resolve code review comments * reformatted files * fixed tests * Fix for failing IT test in jpaserver-starter (#5435) Co-authored-by: dotasek <dotasek.dev@gmail.com> * wip * Bump jackson databind * Pin Version * Ignored duplicate classes * Updating version to: 6.10.1 post release. * Fix pom * Skip remorte nexus * make release faster * Updating version to: 6.10.1 post release. * remove skiptests --------- Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> Co-authored-by: Martha Mitran <martha.mitran@smilecdr.com> Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> Co-authored-by: TynerGjs <132295567+TynerGjs@users.noreply.github.com> Co-authored-by: dotasek <david.otasek@smilecdr.com> Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> Co-authored-by: justindar <justin.dar@smilecdr.com> Co-authored-by: Nathan Doef <n.doef@protonmail.com> Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com> Co-authored-by: TipzCM <leif.stawnyczy@gmail.com> Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com> Co-authored-by: Brenin Rhodes <brenin@alphora.com> Co-authored-by: Justin McKelvy <60718638+Capt-Mac@users.noreply.github.com> Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com> Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> Co-authored-by: Nathan Doef <nathaniel.doef@smilecdr.com> Co-authored-by: LalithE <132382565+LalithE@users.noreply.github.com> Co-authored-by: dotasek <dotasek.dev@gmail.com> Co-authored-by: markiantorno <markiantorno@gmail.com>
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<plugin>
<groupId>org.sonatype.plugins</groupId>
<artifactId>nexus-staging-maven-plugin</artifactId>
<configuration>
<skipNexusStagingDeployMojo>true</skipNexusStagingDeployMojo>
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</configuration>
</plugin>
</plugins>
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<finalName>hapi-fhir-jpaserver</finalName>
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</build>
<profiles>
<profile>
<id>DIST</id>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<executions>
<execution>
<goals>
<goal>war</goal>
</goals>
</execution>
</executions>
<configuration>
<archive>
<manifestEntries>
<Build-Time>${maven.build.timestamp}</Build-Time>
</manifestEntries>
</archive>
<overlays>
<overlay>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-testpage-overlay</artifactId>
<excludes>
<exclude>WEB-INF/classes/**/*.class</exclude>
</excludes>
</overlay>
</overlays>
</configuration>
</plugin>
</plugins>
</build>
</profile>
</profiles>
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</project>