hapi-fhir/hapi-fhir-jpaserver-base/pom.xml

<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://maven.apache.org/POM/4.0.0"
			xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>

	<parent>
		<groupId>ca.uhn.hapi.fhir</groupId>
		<artifactId>hapi-deployable-pom</artifactId>
		<version>6.5.12-SNAPSHOT</version>

		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
	</parent>

	<artifactId>hapi-fhir-jpaserver-base</artifactId>
	<packaging>jar</packaging>

	<name>HAPI FHIR JPA Server</name>

	<dependencies>

		<dependency>
			<groupId>com.fasterxml.woodstox</groupId>
			<artifactId>woodstox-core</artifactId>
		</dependency>

		<dependency>
			<groupId>org.apache.commons</groupId>
			<artifactId>commons-csv</artifactId>
		</dependency>

		<dependency>
			<groupId>co.elastic.apm</groupId>
			<artifactId>apm-agent-api</artifactId>
		</dependency>

		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-base</artifactId>
			<version>${project.version}</version>
			<exclusions>
				<exclusion>
					<artifactId>commons-logging</artifactId>
					<groupId>commons-logging</groupId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-client</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-server</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-server-mdm</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-storage</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-jpaserver-subscription</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-jpaserver-searchparam</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-sql-migrate</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-jpaserver-model</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-validation</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-structures-dstu2</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-structures-dstu3</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-structures-r4</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-structures-r4b</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-structures-r5</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-validation-resources-r4</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-validation-resources-r4b</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-validation-resources-r5</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-storage-batch2</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-storage-batch2-jobs</artifactId>
			<version>${project.version}</version>
		</dependency>

		<dependency>
			<groupId>org.apache.commons</groupId>
			<artifactId>commons-dbcp2</artifactId>
			<exclusions>
				<exclusion>
					<groupId>commons-logging</groupId>
					<artifactId>commons-logging</artifactId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>net.ttddyy</groupId>
			<artifactId>datasource-proxy</artifactId>
		</dependency>

		<dependency>
			<groupId>ch.qos.logback</groupId>
			<artifactId>logback-classic</artifactId>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.awaitility</groupId>
			<artifactId>awaitility</artifactId>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.javassist</groupId>
			<artifactId>javassist</artifactId>
		</dependency>

		<!-- GraphQL -->
		<dependency>
			<groupId>com.graphql-java</groupId>
			<artifactId>graphql-java</artifactId>
		</dependency>

		<!-- SQL Builder -->
		<dependency>
			<groupId>com.healthmarketscience.sqlbuilder</groupId>
			<artifactId>sqlbuilder</artifactId>
		</dependency>


		<!-- Jackson -->
		<dependency>
			<groupId>com.fasterxml.jackson.core</groupId>
			<artifactId>jackson-annotations</artifactId>
		</dependency>
		<dependency>
			<groupId>com.fasterxml.jackson.core</groupId>
			<artifactId>jackson-databind</artifactId>
		</dependency>
		<dependency>
			<groupId>org.springdoc</groupId>
			<artifactId>springdoc-openapi-ui</artifactId>
		</dependency>

		<dependency>
			<groupId>org.thymeleaf</groupId>
			<artifactId>thymeleaf</artifactId>
		</dependency>
		<dependency>
			<groupId>org.thymeleaf</groupId>
			<artifactId>thymeleaf-spring5</artifactId>
		</dependency>

		<!-- For UCUM: TODO we should replace this with org.fhir UCUM -->
		<dependency>
			<groupId>org.jscience</groupId>
			<artifactId>jscience</artifactId>
			<exclusions>
				<exclusion>
					<groupId>org.javolution</groupId>
					<artifactId>javolution</artifactId>
				</exclusion>
			</exclusions>
		</dependency>


		<!-- Patch Dependencies -->
		<dependency>
			<groupId>io.dogote</groupId>
			<artifactId>json-patch</artifactId>
		</dependency>
		<dependency>
			<groupId>com.github.dnault</groupId>
			<artifactId>xml-patch</artifactId>
		</dependency>

		<!-- FHIR RI is pulled in for UCUM support, but we don't want any of its dependencies. -->

		<!-- 
		For some reason JavaDoc crashed during site generation unless we have this dependency
		-->
		<dependency>
			<groupId>javax.interceptor</groupId>
			<artifactId>javax.interceptor-api</artifactId>
			<scope>provided</scope>
		</dependency>

		<!--
		Dependencies that need to be added since JDK9
		-->
		<dependency>
			<groupId>javax.servlet</groupId>
			<artifactId>javax.servlet-api</artifactId>
			<scope>provided</scope>
		</dependency>

		<!-- Spring -->
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-core</artifactId>
			<exclusions>
				<exclusion>
					<artifactId>commons-logging</artifactId>
					<groupId>commons-logging</groupId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>org.springframework.data</groupId>
			<artifactId>spring-data-jpa</artifactId>
			<exclusions>
				<exclusion>
					<artifactId>spring-aop</artifactId>
					<groupId>org.springframework</groupId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>org.springframework.data</groupId>
			<artifactId>spring-data-commons</artifactId>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-messaging</artifactId>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-tx</artifactId>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-context-support</artifactId>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-webmvc</artifactId>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-websocket</artifactId>
		</dependency>
		<dependency>
			<groupId>javax.el</groupId>
			<artifactId>javax.el-api</artifactId>
			<scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.glassfish</groupId>
			<artifactId>javax.el</artifactId>
		</dependency>

		<!-- Note that we need this dependency to send log4j logging requests to slf4j -->
		<dependency>
			<groupId>org.apache.logging.log4j</groupId>
			<artifactId>log4j-to-slf4j</artifactId>
		</dependency>
		<!-- Hibernate Search -->
		<dependency>
			<groupId>org.elasticsearch.client</groupId>
			<artifactId>elasticsearch-rest-high-level-client</artifactId>
			<exclusions>
				<exclusion>
					<groupId>org.apache.logging.log4j</groupId>
					<artifactId>log4j-api</artifactId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>org.hibernate.search</groupId>
			<artifactId>hibernate-search-backend-elasticsearch</artifactId>
		</dependency>
		<dependency>
			<groupId>org.hibernate.search</groupId>
			<artifactId>hibernate-search-backend-lucene</artifactId>
		</dependency>
		<dependency>
			<groupId>org.hibernate.search</groupId>
			<artifactId>hibernate-search-backend-elasticsearch-aws</artifactId>
		</dependency>
		<dependency>
			<groupId>org.hibernate</groupId>
			<artifactId>hibernate-envers</artifactId>
		</dependency>
		<dependency>
			<groupId>org.springframework.data</groupId>
			<artifactId>spring-data-envers</artifactId>
		</dependency>
		<dependency>
			<groupId>org.apache.lucene</groupId>
			<artifactId>lucene-analyzers-phonetic</artifactId>
		</dependency>
		<dependency>
			<groupId>org.apache.lucene</groupId>
			<artifactId>lucene-backward-codecs</artifactId>
		</dependency>
		<!-- Misc -->
		<dependency>
			<groupId>com.google.guava</groupId>
			<artifactId>guava</artifactId>
		</dependency>
		<dependency>
			<groupId>jakarta.annotation</groupId>
			<artifactId>jakarta.annotation-api</artifactId>
		</dependency>

		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-server-openapi</artifactId>
			<version>${project.version}</version>
			<scope>test</scope>
		</dependency>

		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-caching-caffeine</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-caching-testing</artifactId>
			<version>${project.version}</version>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-test-utilities</artifactId>
			<version>${project.version}</version>
			<scope>test</scope>
		</dependency>

		<dependency>
			<groupId>org.jetbrains</groupId>
			<artifactId>annotations</artifactId>
		</dependency>
		<dependency>
			<groupId>org.apache.jena</groupId>
			<artifactId>jena-arq</artifactId>
			<scope>compile</scope>
			<exclusions>
				<exclusion>
					<groupId>javax.annotation</groupId>
					<artifactId>javax.annotation-api</artifactId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>org.apache.jena</groupId>
			<artifactId>jena-core</artifactId>
			<scope>compile</scope>
		</dependency>
		<dependency>
			<groupId>com.jayway.jsonpath</groupId>
			<artifactId>json-path-assert</artifactId>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>com.jayway.jsonpath</groupId>
			<artifactId>json-path</artifactId>
		</dependency>
	</dependencies>


	<properties>
		<jackson.version>2.7.1</jackson.version>
	</properties>

	<build>
		<plugins>
			<plugin>
				<groupId>de.jpdigital</groupId>
				<artifactId>hibernate56-ddl-maven-plugin</artifactId>
				<configuration>
					<dialects>
						<param>h2</param>
						<param>derby_10_7</param>
						<param>mysql57</param>
						<param>mariadb</param>
						<param>oracle12c</param>
						<param>sqlserver2012</param>
					</dialects>
					<customDialects>
						<customDialect>ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgres94Dialect</customDialect>
						<customDialect>org.hibernate.dialect.CockroachDB201Dialect</customDialect>
					</customDialects>
					<outputDirectory>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database</outputDirectory>
					<packages>
						<param>ca.uhn.fhir.jpa.entity</param>
						<param>ca.uhn.fhir.jpa.model.entity</param>
					</packages>
				</configuration>
				<executions>
					<execution>
						<phase>process-classes</phase>
						<goals>
							<goal>gen-ddl</goal>
						</goals>
					</execution>
				</executions>
				<dependencies>
					<!--
					These have been added as explicit dependencies
					as JDK9 no longer includes them by default
					-->
					<dependency>
						<groupId>org.glassfish.jaxb</groupId>
						<artifactId>jaxb-runtime</artifactId>
						<version>${jaxb_runtime_version}</version>
					</dependency>
					<dependency>
						<groupId>ca.uhn.hapi.fhir</groupId>
						<artifactId>hapi-fhir-jpaserver-model</artifactId>
						<version>${project.version}</version>
					</dependency>
					<dependency>
						<groupId>org.hibernate</groupId>
						<artifactId>hibernate-core</artifactId>
						<version>${hibernate_version}</version>
					</dependency>
					<dependency>
						<groupId>org.hibernate</groupId>
						<artifactId>hibernate-envers</artifactId>
						<!-- N.B. Maven reacts badly if we omit the version for plugin dependencies, despite being defined in the parent pom's dependencyManagement section -->
						<version>${hibernate_version}</version>
					</dependency>
					<dependency>
						<groupId>javax.xml.bind</groupId>
						<artifactId>jaxb-api</artifactId>
						<version>${jaxb_api_version}</version>
					</dependency>
					<dependency>
						<groupId>com.sun.xml.bind</groupId>
						<artifactId>jaxb-impl</artifactId>
						<version>${jaxb_api_version}</version>
					</dependency>
				</dependencies>
			</plugin>
			<plugin>
				<groupId>ca.uhn.hapi.fhir</groupId>
				<artifactId>hapi-tinder-plugin</artifactId>
				<version>${project.version}</version>
				<executions>
					<execution>
						<id>build_dstu2</id>
						<goals>
							<goal>generate-jparest-server</goal>
						</goals>
						<configuration>
							<version>dstu2</version>
							<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
							<packageBase>ca.uhn.fhir.jpa.rp.dstu2</packageBase>
							<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu2.xml
							</targetResourceSpringBeansFile>
							<baseResourceNames/>
							<excludeResourceNames>
								<!-- <excludeResourceName>OperationDefinition</excludeResourceName> <excludeResourceName>OperationOutcome</excludeResourceName> -->
							</excludeResourceNames>
						</configuration>
					</execution>
					<execution>
						<id>build_dstu3</id>
						<goals>
							<goal>generate-jparest-server</goal>
						</goals>
						<configuration>
							<version>dstu3</version>
							<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
							<packageBase>ca.uhn.fhir.jpa.rp.dstu3</packageBase>
							<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu3.xml
							</targetResourceSpringBeansFile>
							<baseResourceNames></baseResourceNames>
							<excludeResourceNames>
							</excludeResourceNames>
						</configuration>
					</execution>
					<execution>
						<id>build_r4</id>
						<goals>
							<goal>generate-jparest-server</goal>
						</goals>
						<configuration>
							<version>r4</version>
							<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
							<packageBase>ca.uhn.fhir.jpa.rp.r4</packageBase>
							<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-r4.xml
							</targetResourceSpringBeansFile>
							<baseResourceNames></baseResourceNames>
							<excludeResourceNames>
							</excludeResourceNames>
						</configuration>
					</execution>
					<execution>
						<id>build_r4b</id>
						<goals>
							<goal>generate-jparest-server</goal>
						</goals>
						<configuration>
							<version>r4b</version>
							<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
							<packageBase>ca.uhn.fhir.jpa.rp.r4b</packageBase>
							<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-r4b.xml
							</targetResourceSpringBeansFile>
							<baseResourceNames></baseResourceNames>
							<excludeResourceNames>
							</excludeResourceNames>
						</configuration>
					</execution>
					<execution>
						<id>build_r5</id>
						<goals>
							<goal>generate-jparest-server</goal>
						</goals>
						<configuration>
							<version>r5</version>
							<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
							<packageBase>ca.uhn.fhir.jpa.rp.r5</packageBase>
							<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-r5.xml
							</targetResourceSpringBeansFile>
							<baseResourceNames></baseResourceNames>
						</configuration>
					</execution>
				</executions>

				<dependencies>
					<dependency>
						<groupId>ca.uhn.hapi.fhir</groupId>
						<artifactId>hapi-fhir-structures-dstu2</artifactId>
						<version>${project.version}</version>
					</dependency>
					<dependency>
						<groupId>ca.uhn.hapi.fhir</groupId>
						<artifactId>hapi-fhir-structures-dstu3</artifactId>
						<version>${project.version}</version>
					</dependency>
					<dependency>
						<groupId>ca.uhn.hapi.fhir</groupId>
						<artifactId>hapi-fhir-structures-r4</artifactId>
						<version>${project.version}</version>
					</dependency>

					<dependency>
						<groupId>ca.uhn.hapi.fhir</groupId>
						<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
						<version>${project.version}</version>
					</dependency>
				</dependencies>
			</plugin>
			<plugin>
				<groupId>org.codehaus.mojo</groupId>
				<artifactId>build-helper-maven-plugin</artifactId>
				<executions>
					<execution>
						<id>add-source</id>
						<phase>generate-sources</phase>
						<goals>
							<goal>add-source</goal>
						</goals>
						<configuration>
							<sources>
								<source>target/generated-sources/tinder</source>
							</sources>
						</configuration>
					</execution>
				</executions>
			</plugin>
		</plugins>
		<resources>
			<resource>
				<directory>${project.basedir}/src/main/resources</directory>
			</resource>
			<resource>
				<directory>${project.basedir}/target/generated-resources/tinder</directory>
			</resource>
		</resources>
	</build>

</project>