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hapi-fhir
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Merge branch 'master' of github.com:jamesagnew/hapi-fhir

This commit is contained in:
James Agnew 2017-06-27 21:13:04 -04:00
parent a0004c9166 70a396f703
commit 9939785713
10 changed files with 498 additions and 235 deletions
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2
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseHapiFhirDao.java
View File

@ -2056,7 +2056,7 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao {
return paramMap;
}
protected static List<NameValuePair> translateMatchUrl(String theMatchUrl) {
public static List<NameValuePair> translateMatchUrl(String theMatchUrl) {
List<NameValuePair> parameters;
String matchUrl = theMatchUrl;
int questionMarkIndex = matchUrl.indexOf('?');

70
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/interceptor/RestHookSubscriptionDstu2Interceptor.java
View File

@ -29,9 +29,12 @@ import javax.annotation.PostConstruct;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import org.apache.http.NameValuePair;
import org.apache.http.client.methods.HttpPost;
import org.apache.http.client.methods.HttpPut;
import org.apache.http.client.methods.HttpUriRequest;
import org.apache.http.client.utils.URLEncodedUtils;
import org.apache.http.entity.ContentType;
import org.apache.http.entity.StringEntity;
import org.hl7.fhir.instance.model.api.IBaseResource;
@ -63,6 +66,7 @@ import ca.uhn.fhir.rest.server.interceptor.*;
public class RestHookSubscriptionDstu2Interceptor extends ServerOperationInterceptorAdapter {
private static final Integer MAX_SUBSCRIPTION_RESULTS = 10000;
private static volatile ExecutorService executor;
private final static int MAX_THREADS = 1;
@ -71,13 +75,13 @@ public class RestHookSubscriptionDstu2Interceptor extends ServerOperationInterce
@Autowired
private FhirContext myFhirContext;
private boolean myNotifyOnDelete = false;
private final List<Subscription> myRestHookSubscriptions = new ArrayList<Subscription>();
@Autowired
@Qualifier("mySubscriptionDaoDstu2")
private IFhirResourceDao<Subscription> mySubscriptionDao;
private boolean myNotifyOnDelete = false;
private final List<Subscription> myRestHookSubscriptions = new ArrayList<Subscription>();
/**
* Check subscriptions and send notifications or payload
*
@ -205,6 +209,7 @@ public class RestHookSubscriptionDstu2Interceptor extends ServerOperationInterce
req.setSubRequest(true);
IFhirResourceDao<? extends IBaseResource> responseDao = mySubscriptionDao.getDao(responseResourceDef.getImplementingClass());
responseCriteriaUrl.setCount(MAX_SUBSCRIPTION_RESULTS);
IBundleProvider responseResults = responseDao.search(responseCriteriaUrl, req);
return responseResults;
}
@ -265,7 +270,12 @@ public class RestHookSubscriptionDstu2Interceptor extends ServerOperationInterce
RequestDetails req = new ServletSubRequestDetails();
req.setSubRequest(true);
map.setCount(MAX_SUBSCRIPTION_RESULTS);
IBundleProvider subscriptionBundleList = mySubscriptionDao.search(map, req);
if (subscriptionBundleList.size() >= MAX_SUBSCRIPTION_RESULTS) {
ourLog.error("Currently over "+MAX_SUBSCRIPTION_RESULTS+" subscriptions. Some subscriptions have not been loaded.");
}
List<IBaseResource> resourceList = subscriptionBundleList.getResources(0, subscriptionBundleList.size());
for (IBaseResource resource : resourceList) {
@ -398,4 +408,58 @@ public class RestHookSubscriptionDstu2Interceptor extends ServerOperationInterce
public void setSubscriptionDao(IFhirResourceDao<Subscription> theSubscriptionDao) {
mySubscriptionDao = theSubscriptionDao;
}
@Override
public void incomingRequestPreHandled(RestOperationTypeEnum theOperation, ActionRequestDetails theDetails) {
//check the subscription criteria to see if its valid before creating or updating a subscription
if (RestOperationTypeEnum.CREATE.equals(theOperation) || RestOperationTypeEnum.UPDATE.equals(theOperation)) {
String resourceType = theDetails.getResourceType();
ourLog.info("prehandled resource type: " + resourceType);
if (resourceType != null && resourceType.equals(Subscription.class.getSimpleName())) {
Subscription subscription = (Subscription) theDetails.getResource();
if (subscription != null) {
checkSubscriptionCriterias(subscription);
}
}
}
super.incomingRequestPreHandled(theOperation, theDetails);
}
private void checkSubscriptionCriterias(Subscription subscription){
try {
IBundleProvider results = executeSubscriptionCriteria(subscription, null);
}catch (Exception e){
throw new InvalidRequestException("Invalid criteria");
}
}
private IBundleProvider executeSubscriptionCriteria(Subscription subscription, IIdType idType){
//run the subscriptions query and look for matches, add the id as part of the criteria to avoid getting matches of previous resources rather than the recent resource
String criteria = subscription.getCriteria();
if(idType != null) {
criteria += "&_id=" + idType.getResourceType() + "/" + idType.getIdPart();
}
IBundleProvider results = getBundleProvider(criteria);
return results;
}
/**
* Get the encoding from the criteria or return JSON encoding if its not found
*
* @param criteria
* @return
*/
private EncodingEnum getEncoding(String criteria) {
//check criteria
String params = criteria.substring(criteria.indexOf('?') + 1);
List<NameValuePair> paramValues = URLEncodedUtils.parse(params, Constants.CHARSET_UTF8, '&');
for (NameValuePair nameValuePair : paramValues) {
if (Constants.PARAM_FORMAT.equals(nameValuePair.getName())) {
return EncodingEnum.forContentType(nameValuePair.getValue());
}
}
return EncodingEnum.JSON;
}
}

82
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/interceptor/RestHookSubscriptionDstu3Interceptor.java
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@ -30,9 +30,12 @@ import javax.annotation.PostConstruct;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import org.apache.http.NameValuePair;
import org.apache.http.client.methods.HttpPost;
import org.apache.http.client.methods.HttpPut;
import org.apache.http.client.methods.HttpUriRequest;
import org.apache.http.client.utils.URLEncodedUtils;
import org.apache.http.entity.ContentType;
import org.apache.http.entity.StringEntity;
import org.hl7.fhir.dstu3.model.Subscription;
@ -61,6 +64,7 @@ import ca.uhn.fhir.rest.server.interceptor.*;
public class RestHookSubscriptionDstu3Interceptor extends ServerOperationInterceptorAdapter {
private static final Integer MAX_SUBSCRIPTION_RESULTS = 10000;
private static volatile ExecutorService executor;
private final static int MAX_THREADS = 1;
@ -69,20 +73,11 @@ public class RestHookSubscriptionDstu3Interceptor extends ServerOperationInterce
@Autowired
private FhirContext myFhirContext;
public void setFhirContext(FhirContext theFhirContext) {
myFhirContext = theFhirContext;
}
public void setSubscriptionDao(IFhirResourceDao<Subscription> theSubscriptionDao) {
mySubscriptionDao = theSubscriptionDao;
}
@Autowired
@Qualifier("mySubscriptionDaoDstu3")
private IFhirResourceDao<Subscription> mySubscriptionDao;
private boolean notifyOnDelete = false;
private final List<Subscription> myRestHookSubscriptions = new ArrayList<Subscription>();
/**
@ -205,6 +200,7 @@ public class RestHookSubscriptionDstu3Interceptor extends ServerOperationInterce
req.setSubRequest(true);
IFhirResourceDao<? extends IBaseResource> responseDao = mySubscriptionDao.getDao(responseResourceDef.getImplementingClass());
responseCriteriaUrl.setCount(MAX_SUBSCRIPTION_RESULTS);
IBundleProvider responseResults = responseDao.search(responseCriteriaUrl, req);
return responseResults;
}
@ -254,7 +250,6 @@ public class RestHookSubscriptionDstu3Interceptor extends ServerOperationInterce
return entity;
}
/**
* Read the existing subscriptions from the database
*/
@ -266,7 +261,12 @@ public class RestHookSubscriptionDstu3Interceptor extends ServerOperationInterce
RequestDetails req = new ServletSubRequestDetails();
req.setSubRequest(true);
map.setCount(MAX_SUBSCRIPTION_RESULTS);
IBundleProvider subscriptionBundleList = mySubscriptionDao.search(map, req);
if (subscriptionBundleList.size() >= MAX_SUBSCRIPTION_RESULTS) {
ourLog.error("Currently over "+MAX_SUBSCRIPTION_RESULTS+" subscriptions. Some subscriptions have not been loaded.");
}
List<IBaseResource> resourceList = subscriptionBundleList.getResources(0, subscriptionBundleList.size());
for (IBaseResource resource : resourceList) {
@ -388,7 +388,69 @@ public class RestHookSubscriptionDstu3Interceptor extends ServerOperationInterce
}
}
public void setFhirContext(FhirContext theFhirContext) {
myFhirContext = theFhirContext;
}
public void setNotifyOnDelete(boolean notifyOnDelete) {
this.notifyOnDelete = notifyOnDelete;
}
public void setSubscriptionDao(IFhirResourceDao<Subscription> theSubscriptionDao) {
mySubscriptionDao = theSubscriptionDao;
}
@Override
public void incomingRequestPreHandled(RestOperationTypeEnum theOperation, ActionRequestDetails theDetails) {
//check the subscription criteria to see if its valid before creating or updating a subscription
if (RestOperationTypeEnum.CREATE.equals(theOperation) || RestOperationTypeEnum.UPDATE.equals(theOperation)) {
String resourceType = theDetails.getResourceType();
ourLog.info("prehandled resource type: " + resourceType);
if (resourceType != null && resourceType.equals(Subscription.class.getSimpleName())) {
Subscription subscription = (Subscription) theDetails.getResource();
if (subscription != null) {
checkSubscriptionCriterias(subscription);
}
}
}
super.incomingRequestPreHandled(theOperation, theDetails);
}
private void checkSubscriptionCriterias(Subscription subscription){
try {
IBundleProvider results = executeSubscriptionCriteria(subscription, null);
}catch (Exception e){
throw new InvalidRequestException("Invalid criteria");
}
}
private IBundleProvider executeSubscriptionCriteria(Subscription subscription, IIdType idType){
//run the subscriptions query and look for matches, add the id as part of the criteria to avoid getting matches of previous resources rather than the recent resource
String criteria = subscription.getCriteria();
if(idType != null) {
criteria += "&_id=" + idType.getResourceType() + "/" + idType.getIdPart();
}
IBundleProvider results = getBundleProvider(criteria);
return results;
}
/**
* Get the encoding from the criteria or return JSON encoding if its not found
*
* @param criteria
* @return
*/
private EncodingEnum getEncoding(String criteria) {
//check criteria
String params = criteria.substring(criteria.indexOf('?') + 1);
List<NameValuePair> paramValues = URLEncodedUtils.parse(params, Constants.CHARSET_UTF8, '&');
for (NameValuePair nameValuePair : paramValues) {
if (Constants.PARAM_FORMAT.equals(nameValuePair.getName())) {
return EncodingEnum.forContentType(nameValuePair.getValue());
}
}
return EncodingEnum.JSON;
}
}

125
hapi-fhir-jpaserver-example/src/main/java/ca/uhn/fhir/jpa/demo/FhirServerConfigDstu2.java Normal file
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@ -0,0 +1,125 @@
package ca.uhn.fhir.jpa.demo;
import ca.uhn.fhir.jpa.config.BaseJavaConfigDstu2;
import ca.uhn.fhir.jpa.config.BaseJavaConfigDstu3;
import ca.uhn.fhir.jpa.dao.DaoConfig;
import ca.uhn.fhir.jpa.util.SubscriptionsRequireManualActivationInterceptorDstu2;
import ca.uhn.fhir.jpa.util.SubscriptionsRequireManualActivationInterceptorDstu3;
import ca.uhn.fhir.rest.server.interceptor.IServerInterceptor;
import ca.uhn.fhir.rest.server.interceptor.LoggingInterceptor;
import ca.uhn.fhir.rest.server.interceptor.ResponseHighlighterInterceptor;
import org.apache.commons.dbcp2.BasicDataSource;
import org.apache.commons.lang3.time.DateUtils;
import org.hibernate.jpa.HibernatePersistenceProvider;
import org.springframework.beans.factory.annotation.Autowire;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Configuration;
import org.springframework.orm.jpa.JpaTransactionManager;
import org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean;
import org.springframework.transaction.annotation.EnableTransactionManagement;
import javax.persistence.EntityManagerFactory;
import javax.sql.DataSource;
import java.util.Properties;
/**
* This is the primary configuration file for the example server
*/
@Configuration
@EnableTransactionManagement()
public class FhirServerConfigDstu2 extends BaseJavaConfigDstu2 {
/**
* Configure FHIR properties around the the JPA server via this bean
*/
@Bean()
public DaoConfig daoConfig() {
DaoConfig retVal = new DaoConfig();
retVal.setSubscriptionEnabled(true);
retVal.setSubscriptionPollDelay(5000);
retVal.setSubscriptionPurgeInactiveAfterMillis(DateUtils.MILLIS_PER_HOUR);
retVal.setAllowMultipleDelete(true);
return retVal;
}
/**
* The following bean configures the database connection. The 'url' property value of "jdbc:derby:directory:jpaserver_derby_files;create=true" indicates that the server should save resources in a
* directory called "jpaserver_derby_files".
*
* A URL to a remote database could also be placed here, along with login credentials and other properties supported by BasicDataSource.
*/
@Bean(destroyMethod = "close")
public DataSource dataSource() {
BasicDataSource retVal = new BasicDataSource();
retVal.setDriver(new org.apache.derby.jdbc.EmbeddedDriver());
retVal.setUrl("jdbc:derby:directory:target/jpaserver_derby_files;create=true");
retVal.setUsername("");
retVal.setPassword("");
return retVal;
}
@Bean()
public LocalContainerEntityManagerFactoryBean entityManagerFactory() {
LocalContainerEntityManagerFactoryBean retVal = new LocalContainerEntityManagerFactoryBean();
retVal.setPersistenceUnitName("HAPI_PU");
retVal.setDataSource(dataSource());
retVal.setPackagesToScan("ca.uhn.fhir.jpa.entity");
retVal.setPersistenceProvider(new HibernatePersistenceProvider());
retVal.setJpaProperties(jpaProperties());
return retVal;
}
private Properties jpaProperties() {
Properties extraProperties = new Properties();
extraProperties.put("hibernate.dialect", org.hibernate.dialect.DerbyTenSevenDialect.class.getName());
extraProperties.put("hibernate.format_sql", "true");
extraProperties.put("hibernate.show_sql", "false");
extraProperties.put("hibernate.hbm2ddl.auto", "update");
extraProperties.put("hibernate.jdbc.batch_size", "20");
extraProperties.put("hibernate.cache.use_query_cache", "false");
extraProperties.put("hibernate.cache.use_second_level_cache", "false");
extraProperties.put("hibernate.cache.use_structured_entries", "false");
extraProperties.put("hibernate.cache.use_minimal_puts", "false");
extraProperties.put("hibernate.search.default.directory_provider", "filesystem");
extraProperties.put("hibernate.search.default.indexBase", "target/lucenefiles");
extraProperties.put("hibernate.search.lucene_version", "LUCENE_CURRENT");
// extraProperties.put("hibernate.search.default.worker.execution", "async");
return extraProperties;
}
/**
* Do some fancy logging to create a nice access log that has details about each incoming request.
*/
public IServerInterceptor loggingInterceptor() {
LoggingInterceptor retVal = new LoggingInterceptor();
retVal.setLoggerName("fhirtest.access");
retVal.setMessageFormat(
"Path[${servletPath}] Source[${requestHeader.x-forwarded-for}] Operation[${operationType} ${operationName} ${idOrResourceName}] UA[${requestHeader.user-agent}] Params[${requestParameters}] ResponseEncoding[${responseEncodingNoDefault}]");
retVal.setLogExceptions(true);
retVal.setErrorMessageFormat("ERROR - ${requestVerb} ${requestUrl}");
return retVal;
}
/**
* This interceptor adds some pretty syntax highlighting in responses when a browser is detected
*/
@Bean(autowire = Autowire.BY_TYPE)
public IServerInterceptor responseHighlighterInterceptor() {
ResponseHighlighterInterceptor retVal = new ResponseHighlighterInterceptor();
return retVal;
}
@Bean(autowire = Autowire.BY_TYPE)
public IServerInterceptor subscriptionSecurityInterceptor() {
SubscriptionsRequireManualActivationInterceptorDstu2 retVal = new SubscriptionsRequireManualActivationInterceptorDstu2();
return retVal;
}
@Bean()
public JpaTransactionManager transactionManager(EntityManagerFactory entityManagerFactory) {
JpaTransactionManager retVal = new JpaTransactionManager();
retVal.setEntityManagerFactory(entityManagerFactory);
return retVal;
}
}

56
hapi-fhir-jpaserver-example/src/main/java/ca/uhn/fhir/jpa/demo/FhirTesterConfigDstu2.java Normal file
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@ -0,0 +1,56 @@
package ca.uhn.fhir.jpa.demo;
import ca.uhn.fhir.context.FhirVersionEnum;
import ca.uhn.fhir.to.FhirTesterMvcConfig;
import ca.uhn.fhir.to.TesterConfig;
import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Configuration;
import org.springframework.context.annotation.Import;
//@formatter:off
/**
* This spring config file configures the web testing module. It serves two
* purposes:
* 1. It imports FhirTesterMvcConfig, which is the spring config for the
* tester itself
* 2. It tells the tester which server(s) to talk to, via the testerConfig()
* method below
*/
@Configuration
@Import(FhirTesterMvcConfig.class)
public class FhirTesterConfigDstu2 {
/**
* This bean tells the testing webpage which servers it should configure itself
* to communicate with. In this example we configure it to talk to the local
* server, as well as one public server. If you are creating a project to
* deploy somewhere else, you might choose to only put your own server's
* address here.
*
* Note the use of the ${serverBase} variable below. This will be replaced with
* the base URL as reported by the server itself. Often for a simple Tomcat
* (or other container) installation, this will end up being something
* like "http://localhost:8080/hapi-fhir-jpaserver-example". If you are
* deploying your server to a place with a fully qualified domain name,
* you might want to use that instead of using the variable.
*/
@Bean
public TesterConfig testerConfig() {
TesterConfig retVal = new TesterConfig();
retVal
.addServer()
.withId("home")
.withFhirVersion(FhirVersionEnum.DSTU2)
.withBaseUrl("${serverBase}/baseDstu2")
.withName("Local Tester")
.addServer()
.withId("hapi")
.withFhirVersion(FhirVersionEnum.DSTU2)
.withBaseUrl("http://fhirtest.uhn.ca/baseDstu2")
.withName("Public HAPI Test Server");
return retVal;
}
}
//@formatter:on

169
hapi-fhir-jpaserver-example/src/main/java/ca/uhn/fhir/jpa/demo/JpaServerDemoDstu2.java Normal file
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@ -0,0 +1,169 @@
package ca.uhn.fhir.jpa.demo;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.FhirVersionEnum;
import ca.uhn.fhir.jpa.dao.DaoConfig;
import ca.uhn.fhir.jpa.dao.IFhirSystemDao;
import ca.uhn.fhir.jpa.provider.JpaConformanceProviderDstu1;
import ca.uhn.fhir.jpa.provider.JpaConformanceProviderDstu2;
import ca.uhn.fhir.jpa.provider.JpaSystemProviderDstu1;
import ca.uhn.fhir.jpa.provider.JpaSystemProviderDstu2;
import ca.uhn.fhir.jpa.provider.dstu3.JpaConformanceProviderDstu3;
import ca.uhn.fhir.jpa.provider.dstu3.JpaSystemProviderDstu3;
import ca.uhn.fhir.jpa.search.DatabaseBackedPagingProvider;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.dstu2.composite.MetaDt;
import ca.uhn.fhir.narrative.DefaultThymeleafNarrativeGenerator;
import ca.uhn.fhir.rest.server.ETagSupportEnum;
import ca.uhn.fhir.rest.server.EncodingEnum;
import ca.uhn.fhir.rest.server.IResourceProvider;
import ca.uhn.fhir.rest.server.RestfulServer;
import ca.uhn.fhir.rest.server.interceptor.IServerInterceptor;
import org.hl7.fhir.dstu3.model.Bundle;
import org.hl7.fhir.dstu3.model.Meta;
import org.springframework.web.context.ContextLoaderListener;
import org.springframework.web.context.WebApplicationContext;
import javax.servlet.ServletException;
import java.util.Collection;
import java.util.List;
public class JpaServerDemoDstu2 extends RestfulServer {
private static final long serialVersionUID = 1L;
private WebApplicationContext myAppCtx;
@SuppressWarnings("unchecked")
@Override
protected void initialize() throws ServletException {
super.initialize();
/*
* We want to support FHIR DSTU2 format. This means that the server
* will use the DSTU2 bundle format and other DSTU2 encoding changes.
*
* If you want to use DSTU1 instead, change the following line, and change the 2 occurrences of dstu2 in web.xml to dstu1
*/
FhirVersionEnum fhirVersion = FhirVersionEnum.DSTU2;
setFhirContext(new FhirContext(fhirVersion));
// Get the spring context from the web container (it's declared in web.xml)
myAppCtx = ContextLoaderListener.getCurrentWebApplicationContext();
/*
* The BaseJavaConfigDstu2.java class is a spring configuration
* file which is automatically generated as a part of hapi-fhir-jpaserver-base and
* contains bean definitions for a resource provider for each resource type
*/
String resourceProviderBeanName;
if (fhirVersion == FhirVersionEnum.DSTU1) {
resourceProviderBeanName = "myResourceProvidersDstu1";
} else if (fhirVersion == FhirVersionEnum.DSTU2) {
resourceProviderBeanName = "myResourceProvidersDstu2";
} else if (fhirVersion == FhirVersionEnum.DSTU3) {
resourceProviderBeanName = "myResourceProvidersDstu3";
} else {
throw new IllegalStateException();
}
List<IResourceProvider> beans = myAppCtx.getBean(resourceProviderBeanName, List.class);
setResourceProviders(beans);
/*
* The system provider implements non-resource-type methods, such as
* transaction, and global history.
*/
Object systemProvider;
if (fhirVersion == FhirVersionEnum.DSTU1) {
systemProvider = myAppCtx.getBean("mySystemProviderDstu1", JpaSystemProviderDstu1.class);
} else if (fhirVersion == FhirVersionEnum.DSTU2) {
systemProvider = myAppCtx.getBean("mySystemProviderDstu2", JpaSystemProviderDstu2.class);
} else if (fhirVersion == FhirVersionEnum.DSTU3) {
systemProvider = myAppCtx.getBean("mySystemProviderDstu3", JpaSystemProviderDstu3.class);
} else {
throw new IllegalStateException();
}
setPlainProviders(systemProvider);
/*
* The conformance provider exports the supported resources, search parameters, etc for
* this server. The JPA version adds resource counts to the exported statement, so it
* is a nice addition.
*/
if (fhirVersion == FhirVersionEnum.DSTU1) {
IFhirSystemDao<List<IResource>, MetaDt> systemDao = myAppCtx.getBean("mySystemDaoDstu1", IFhirSystemDao.class);
JpaConformanceProviderDstu1 confProvider = new JpaConformanceProviderDstu1(this, systemDao);
confProvider.setImplementationDescription("Example Server");
setServerConformanceProvider(confProvider);
} else if (fhirVersion == FhirVersionEnum.DSTU2) {
IFhirSystemDao<ca.uhn.fhir.model.dstu2.resource.Bundle, MetaDt> systemDao = myAppCtx.getBean("mySystemDaoDstu2", IFhirSystemDao.class);
JpaConformanceProviderDstu2 confProvider = new JpaConformanceProviderDstu2(this, systemDao,
myAppCtx.getBean(DaoConfig.class));
confProvider.setImplementationDescription("Example Server");
setServerConformanceProvider(confProvider);
} else if (fhirVersion == FhirVersionEnum.DSTU3) {
IFhirSystemDao<Bundle, Meta> systemDao = myAppCtx.getBean("mySystemDaoDstu3", IFhirSystemDao.class);
JpaConformanceProviderDstu3 confProvider = new JpaConformanceProviderDstu3(this, systemDao,
myAppCtx.getBean(DaoConfig.class));
confProvider.setImplementationDescription("Example Server");
setServerConformanceProvider(confProvider);
} else {
throw new IllegalStateException();
}
/*
* Enable ETag Support (this is already the default)
*/
setETagSupport(ETagSupportEnum.ENABLED);
/*
* This server tries to dynamically generate narratives
*/
FhirContext ctx = getFhirContext();
ctx.setNarrativeGenerator(new DefaultThymeleafNarrativeGenerator());
/*
* Default to JSON and pretty printing
*/
setDefaultPrettyPrint(true);
setDefaultResponseEncoding(EncodingEnum.JSON);
/*
* -- New in HAPI FHIR 1.5 --
* This configures the server to page search results to and from
* the database, instead of only paging them to memory. This may mean
* a performance hit when performing searches that return lots of results,
* but makes the server much more scalable.
*/
setPagingProvider(myAppCtx.getBean(DatabaseBackedPagingProvider.class));
/*
* Load interceptors for the server from Spring (these are defined in FhirServerConfig.java)
*/
Collection<IServerInterceptor> interceptorBeans = myAppCtx.getBeansOfType(IServerInterceptor.class).values();
for (IServerInterceptor interceptor : interceptorBeans) {
this.registerInterceptor(interceptor);
}
/*
* If you are hosting this server at a specific DNS name, the server will try to
* figure out the FHIR base URL based on what the web container tells it, but
* this doesn't always work. If you are setting links in your search bundles that
* just refer to "localhost", you might want to use a server address strategy:
*/
//setServerAddressStrategy(new HardcodedServerAddressStrategy("http://mydomain.com/fhir/baseDstu2"));
/*
* If you are using DSTU3+, you may want to add a terminology uploader, which allows
* uploading of external terminologies such as Snomed CT. Note that this uploader
* does not have any security attached (any anonymous user may use it by default)
* so it is a potential security vulnerability. Consider using an AuthorizationInterceptor
* with this feature.
*/
//if (fhirVersion == FhirVersionEnum.DSTU3) {
// registerProvider(myAppCtx.getBean(TerminologyUploaderProviderDstu3.class));
//}
}
}

6
hapi-fhir-jpaserver-example/src/main/webapp/WEB-INF/web-non-polling-subscription-dstu2.xml → hapi-fhir-jpaserver-example/src/main/webapp/WEB-INF/web-dstu2.xml
View File

@ -13,7 +13,7 @@
<context-param>
<param-name>contextConfigLocation</param-name>
<param-value>
ca.uhn.fhir.jpa.demo.FhirServerConfigWSocket
ca.uhn.fhir.jpa.demo.FhirServerConfigDstu2
</param-value>
</context-param>
@ -28,7 +28,7 @@
</init-param>
<init-param>
<param-name>contextConfigLocation</param-name>
<param-value>ca.uhn.fhir.jpa.demo.FhirTesterConfig</param-value>
<param-value>ca.uhn.fhir.jpa.demo.FhirTesterConfigDstu2</param-value>
</init-param>
<load-on-startup>2</load-on-startup>
</servlet>
@ -103,6 +103,4 @@
<filter-name>CORS Filter</filter-name>
<url-pattern>/*</url-pattern>
</filter-mapping>
</web-app>

108
hapi-fhir-jpaserver-example/src/main/webapp/WEB-INF/web-non-polling-subscription-dstu3.xml
View File

@ -1,108 +0,0 @@
<web-app xmlns="http://java.sun.com/xml/ns/javaee" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="3.0"
xsi:schemaLocation="http://java.sun.com/xml/ns/javaee ./xsd/web-app_3_0.xsd">
<listener>
<listener-class>org.springframework.web.context.ContextLoaderListener</listener-class>
</listener>
<context-param>
<param-name>contextClass</param-name>
<param-value>
org.springframework.web.context.support.AnnotationConfigWebApplicationContext
</param-value>
</context-param>
<context-param>
<param-name>contextConfigLocation</param-name>
<param-value>
ca.uhn.fhir.jpa.demo.FhirServerConfigDstu3WSocket
</param-value>
</context-param>
<!-- Servlets -->
<servlet>
<servlet-name>spring</servlet-name>
<servlet-class>org.springframework.web.servlet.DispatcherServlet</servlet-class>
<init-param>
<param-name>contextClass</param-name>
<param-value>org.springframework.web.context.support.AnnotationConfigWebApplicationContext</param-value>
</init-param>
<init-param>
<param-name>contextConfigLocation</param-name>
<param-value>ca.uhn.fhir.jpa.demo.FhirTesterConfig</param-value>
</init-param>
<load-on-startup>2</load-on-startup>
</servlet>
<servlet>
<servlet-name>fhirServlet</servlet-name>
<servlet-class>ca.uhn.fhir.jpa.demo.JpaServerDemo</servlet-class>
<init-param>
<param-name>ImplementationDescription</param-name>
<param-value>FHIR JPA Server</param-value>
</init-param>
<init-param>
<param-name>FhirVersion</param-name>
<param-value>DSTU3</param-value>
</init-param>
<load-on-startup>1</load-on-startup>
</servlet>
<servlet-mapping>
<servlet-name>fhirServlet</servlet-name>
<url-pattern>/baseDstu3/*</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>spring</servlet-name>
<url-pattern>/</url-pattern>
</servlet-mapping>
<!-- This filters provide support for Cross Origin Resource Sharing (CORS) -->
<filter>
<filter-name>CORS Filter</filter-name>
<filter-class>org.ebaysf.web.cors.CORSFilter</filter-class>
<init-param>
<description>A comma separated list of allowed origins. Note: An '*' cannot be used for an allowed origin when using credentials.</description>
<param-name>cors.allowed.origins</param-name>
<param-value>*</param-value>
</init-param>
<init-param>
<description>A comma separated list of HTTP verbs, using which a CORS request can be made.</description>
<param-name>cors.allowed.methods</param-name>
<param-value>GET,POST,PUT,DELETE,OPTIONS</param-value>
</init-param>
<init-param>
<description>A comma separated list of allowed headers when making a non simple CORS request.</description>
<param-name>cors.allowed.headers</param-name>
<param-value>X-FHIR-Starter,Origin,Accept,X-Requested-With,Content-Type,Access-Control-Request-Method,Access-Control-Request-Headers</param-value>
</init-param>
<init-param>
<description>A comma separated list non-standard response headers that will be exposed to XHR2 object.</description>
<param-name>cors.exposed.headers</param-name>
<param-value>Location,Content-Location</param-value>
</init-param>
<init-param>
<description>A flag that suggests if CORS is supported with cookies</description>
<param-name>cors.support.credentials</param-name>
<param-value>true</param-value>
</init-param>
<init-param>
<description>A flag to control logging</description>
<param-name>cors.logging.enabled</param-name>
<param-value>true</param-value>
</init-param>
<init-param>
<description>Indicates how long (in seconds) the results of a preflight request can be cached in a preflight result cache.</description>
<param-name>cors.preflight.maxage</param-name>
<param-value>300</param-value>
</init-param>
</filter>
<filter-mapping>
<filter-name>CORS Filter</filter-name>
<url-pattern>/*</url-pattern>
</filter-mapping>
</web-app>

108
hapi-fhir-jpaserver-example/src/main/webapp/WEB-INF/web-polling-subscription-dstu2.xml
View File

@ -1,108 +0,0 @@
<web-app xmlns="http://java.sun.com/xml/ns/javaee" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="3.0"
xsi:schemaLocation="http://java.sun.com/xml/ns/javaee ./xsd/web-app_3_0.xsd">
<listener>
<listener-class>org.springframework.web.context.ContextLoaderListener</listener-class>
</listener>
<context-param>
<param-name>contextClass</param-name>
<param-value>
org.springframework.web.context.support.AnnotationConfigWebApplicationContext
</param-value>
</context-param>
<context-param>
<param-name>contextConfigLocation</param-name>
<param-value>
ca.uhn.fhir.jpa.demo.FhirServerConfig
</param-value>
</context-param>
<!-- Servlets -->
<servlet>
<servlet-name>spring</servlet-name>
<servlet-class>org.springframework.web.servlet.DispatcherServlet</servlet-class>
<init-param>
<param-name>contextClass</param-name>
<param-value>org.springframework.web.context.support.AnnotationConfigWebApplicationContext</param-value>
</init-param>
<init-param>
<param-name>contextConfigLocation</param-name>
<param-value>ca.uhn.fhir.jpa.demo.FhirTesterConfig</param-value>
</init-param>
<load-on-startup>2</load-on-startup>
</servlet>
<servlet>
<servlet-name>fhirServlet</servlet-name>
<servlet-class>ca.uhn.fhir.jpa.demo.JpaServerDemo</servlet-class>
<init-param>
<param-name>ImplementationDescription</param-name>
<param-value>FHIR JPA Server</param-value>
</init-param>
<init-param>
<param-name>FhirVersion</param-name>
<param-value>DSTU2</param-value>
</init-param>
<load-on-startup>1</load-on-startup>
</servlet>
<servlet-mapping>
<servlet-name>fhirServlet</servlet-name>
<url-pattern>/baseDstu2/*</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>spring</servlet-name>
<url-pattern>/</url-pattern>
</servlet-mapping>
<!-- This filters provide support for Cross Origin Resource Sharing (CORS) -->
<filter>
<filter-name>CORS Filter</filter-name>
<filter-class>org.ebaysf.web.cors.CORSFilter</filter-class>
<init-param>
<description>A comma separated list of allowed origins. Note: An '*' cannot be used for an allowed origin when using credentials.</description>
<param-name>cors.allowed.origins</param-name>
<param-value>*</param-value>
</init-param>
<init-param>
<description>A comma separated list of HTTP verbs, using which a CORS request can be made.</description>
<param-name>cors.allowed.methods</param-name>
<param-value>GET,POST,PUT,DELETE,OPTIONS</param-value>
</init-param>
<init-param>
<description>A comma separated list of allowed headers when making a non simple CORS request.</description>
<param-name>cors.allowed.headers</param-name>
<param-value>X-FHIR-Starter,Origin,Accept,X-Requested-With,Content-Type,Access-Control-Request-Method,Access-Control-Request-Headers</param-value>
</init-param>
<init-param>
<description>A comma separated list non-standard response headers that will be exposed to XHR2 object.</description>
<param-name>cors.exposed.headers</param-name>
<param-value>Location,Content-Location</param-value>
</init-param>
<init-param>
<description>A flag that suggests if CORS is supported with cookies</description>
<param-name>cors.support.credentials</param-name>
<param-value>true</param-value>
</init-param>
<init-param>
<description>A flag to control logging</description>
<param-name>cors.logging.enabled</param-name>
<param-value>true</param-value>
</init-param>
<init-param>
<description>Indicates how long (in seconds) the results of a preflight request can be cached in a preflight result cache.</description>
<param-name>cors.preflight.maxage</param-name>
<param-value>300</param-value>
</init-param>
</filter>
<filter-mapping>
<filter-name>CORS Filter</filter-name>
<url-pattern>/*</url-pattern>
</filter-mapping>
</web-app>

5
src/changes/changes.xml
View File

@ -57,6 +57,11 @@
are linked by object reference and not by ID where indexes were not correctly
generated. This should not affect most users.
</action>
<action type="fix" issue="678">
FIx issue in SubscriptionInterceptor that caused interceptor to only
actually notify listeners of the first 10 subscriptions. Thanks to Jeff Chung
for the pull request!
</action>
</release>
<release version="2.5" date="2017-06-08">
<action type="fix">