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7690 Commits

Author SHA1 Message Date
michelgleeson 009f184ab4
fix refering to wrong view (#2486) 
Co-authored-by: Mike G <michel.gleeson@gmail.com>
 2021-03-18 17:47:46 -04:00
jamesagnew c9c13646f5 License header update 2021-03-18 10:42:46 -04:00
James Agnew d857048207
Preserve meta values in stored resources (#2481) 
* Fix #1731

* Test fix

* Test fixes

* Avoid intermittent failure
 2021-03-17 09:23:22 -04:00
Eric Prud'hommeaux d92a6787c5
- remove-JSON-round-trip-guard (#2472) 
hapi-fhir-structures-r4/.../RDFParserTest.java included a guard to NOT
report round-trip errors if JSON didn't round-trip due to changed
ordering of contained resources (and entries in Bundles). be50a46
appears to have fixed these issues so the guard is no longer
necessary.
 2021-03-17 05:51:29 -04:00
Kunjan Patel bdee1f1269
Update points.json for adding a point in atlas (#2482) 2021-03-17 05:50:07 -04:00
Tadgh b191f1da2b
Merge pull request #2480 from hapifhir/issue-2479-bad-packages 
Have CreatePackageCommand automatically add fhirVersions based on --fhir-version flag
 2021-03-16 18:00:27 -04:00
michelgleeson 0a6c61372c
Parameterize term valueset concept view dao (#2477) 
* Generic the list type to accomidate different substring queries

* special subquery for Oracle

* change the conceptview dao depending on dialect

* address review comments

* remove generics

* no longer inherits

* copy paste from non Oracle version

* dang copy pasters

* changelog

Co-authored-by: Mike G <michel.gleeson@gmail.com>
 2021-03-16 16:26:19 -04:00
Tadgh 30a37a40d5 Fix other broken test 2021-03-16 15:50:59 -04:00
jamesagnew 72026811e6 Add passing test for #2015 2021-03-16 14:44:29 -04:00
Nick Goupinets c7e8342c29
Merge pull request #2459 from hapifhir/ng_validation_s13n_interceptors 
Interceptors to handle standardization, normalization and address and field-level validation.
 2021-03-16 14:38:36 -04:00
Tadgh c3e6de3aff Add changelog 2021-03-16 13:47:29 -04:00
Tadgh fb36294330 Add fhirVersions to package creator, auto-selected by --fhir-version 2021-03-16 13:43:35 -04:00
Nick Goupinets b51f9b4261 Updated init param type 2021-03-16 13:13:23 -04:00
Nick Goupinets d80a9ed848 Fixed test bug 2021-03-16 11:37:49 -04:00
Nick Goupinets f9f703abe2 Added support for additional types 2021-03-16 11:14:40 -04:00
Nick Goupinets ef97eb22fb Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-16 09:08:13 -04:00
jamesagnew beecb49d45 Add test 2021-03-16 08:34:43 -04:00
Nick Goupinets 83acb66675 Touch for a rebuild 2021-03-15 16:16:59 -04:00
Nick Goupinets 744adb2d08 Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-15 10:32:04 -04:00
Nick Goupinets 04a0ecfc2b Added tests 2021-03-15 10:31:38 -04:00
jamesagnew 14f12e7dab Missed commit for #2471 2021-03-15 08:52:46 -04:00
James Agnew 3a8881f913
Resolve NPE in group bulk export (#2476) 2021-03-14 13:12:58 -04:00
jamesagnew f2baf9b8dc Don't corrupt stdout on unit tests 2021-03-13 18:41:31 -05:00
James Agnew 2e7eb972ff
Avoid NPE in ResourceVersionConflictResolutionStrategy for system request (#2471) 
* Avoid NPE in ResourceVersionConflictResolutionStrategy for system
request

* Add changelog
 2021-03-12 19:23:49 -05:00
Nick Goupinets 8c80e0838d Fixing line break problem 2021-03-12 17:48:17 -05:00
Nick Goupinets e188a95d66 Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-12 16:17:25 -05:00
James Agnew 0ad57c51bb
Fix resource reindexing on partitioned seerver (#2468) 
* Fix resource reindexing on partitioned seerver

* Add changelog

* Test fix

* Test fix

* Tets fix

* Test fix
 2021-03-12 14:14:39 -05:00
Nick Goupinets 899bef0c39 Headers 2021-03-12 11:19:14 -05:00
Nick Goupinets f9f0b2705d Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-12 10:30:36 -05:00
Nick Goupinets d68ee68b5d Added test 2021-03-12 10:30:12 -05:00
Nick Goupinets efae1b5e5f Added test 2021-03-11 17:44:34 -05:00
Nick Goupinets 8b8bbcc91f Refactored based on the code review 2021-03-11 17:14:01 -05:00
Nick Goupinets 0013910c53 Removed commented code 2021-03-11 15:48:22 -05:00
Nick Goupinets 01b1210b8a Fixed NPEs on validation 2021-03-11 15:38:45 -05:00
Nick Goupinets 23f3cc1f42 Code review 2021-03-11 14:51:13 -05:00
James Agnew 2633cbd141
Improve error message for invalid date param (#2466) 
* Improve error message for invalid date param

* Add changelog

* Test fixes
 2021-03-11 14:23:02 -05:00
Tadgh 950e65dc48
Merge pull request #2463 from hapifhir/issue-2445-support-patient-level-export 
Issue 2445 support patient level export
 2021-03-11 13:20:44 -05:00
Nick Goupinets 97fc19b2ce
Update hapi-fhir-base/src/main/java/ca/uhn/fhir/util/TerserUtil.java 
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
 2021-03-11 12:12:12 -05:00
Nick Goupinets e4387ea633
Update hapi-fhir-base/src/main/java/ca/uhn/fhir/util/TerserUtil.java 
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
 2021-03-11 12:12:06 -05:00
Nick Goupinets 26653f66da
Update hapi-fhir-base/src/main/java/ca/uhn/fhir/util/TerserUtil.java 
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
 2021-03-11 12:11:39 -05:00
Tadgh e09741cbf6 Merge remote-tracking branch 'origin/master' into issue-2445-support-patient-level-export 2021-03-11 11:08:48 -05:00
Nick Goupinets 8c77882da0 Merge branch 'master' into ng_validation_s13n_interceptors 2021-03-11 09:48:39 -05:00
Tadgh c8ed81d338 Fix up some mocks, fix empty search param maps being generated 2021-03-10 18:26:16 -05:00
Frank Tao 85824efa51
Added index to improve the performance (#2385) 
* Added index to improve the performance

* Added index for FORCED_ID

* Added comments for the index of while 'missing' is supported.

* Updated comments

* Moved the migration script to V5_4_0
 2021-03-10 16:58:10 -05:00
Xiaocheng Luan f752e46e84
Make the search coordinator thread pool size configurable and set a (#2457) 
reasonable default value. The default was 1 and all searches were being
executed sequentially.
 2021-03-10 16:56:49 -05:00
Tadgh 126fc212a7 Reverting dumb changes 2021-03-10 15:43:51 -05:00
Tadgh b86eee5392 Add more validation of resource types 2021-03-10 15:40:18 -05:00
Nick Goupinets b5da1068a2 Removed CDR from the text literal 2021-03-10 15:32:48 -05:00
Tadgh 9e8af41b8b Add test for cache recency 2021-03-10 15:16:21 -05:00
Tadgh 75f756b49f Add changelog 2021-03-10 15:00:54 -05:00