Commit Graph

5346 Commits

Author SHA1 Message Date
Clayton Bodendein 08825a81d9 Add missing @Override annotations
Added missing @Override annotations so that if/when methods in superclasses change
there will be a compile-time error if subclasses haven't been changed accordingly.

This was done using IntelliJ IDEA's "Missing @Override annotation" inspection.
2019-10-02 05:45:59 -04:00
James Agnew da9efaea0b Credit for https://github.com/hapifhir/hapi-fhir-jpaserver-starter/pull/54 2019-10-01 15:22:03 -04:00
jamesagnew 48d191cbe5 Credit for #1473 2019-10-01 05:32:54 -04:00
James Agnew adf09dcd00
Merge pull request #1473 from jaferkhan/missing-date-fields-fix
Fixed issue of missing date fields in search forms
2019-10-01 05:30:43 -04:00
James Agnew 1a2271f751
Merge branch 'master' into missing-date-fields-fix 2019-10-01 05:29:57 -04:00
Diederik Muylwyk f93f92f27e
Merge pull request #1519 from jamesagnew/dm-fix-migration-task-for-termconceptproperty-blob
Fix migration task for TermConceptProperty; should be BLOB, not CLOB.…
2019-09-30 20:23:54 -04:00
James Agnew 62ae8f85cf
Merge pull request #1324 from ahdis/oliveregger_#402
overwritten section text in composition  #402
2019-09-30 20:19:55 -04:00
James Agnew fd16b9efca
Merge branch 'master' into oliveregger_#402 2019-09-30 20:19:25 -04:00
Diederik Muylwyk 826cb0ff10 Fix migration task for TermConceptProperty; should be BLOB, not CLOB. Good job! 2019-09-30 20:18:20 -04:00
James Agnew eaaf2768c3 Fix #402 - Don't overwrite narrative sections 2019-09-30 20:14:36 -04:00
James Agnew 731be21c9f Exclude commons-logging from dependencies 2019-09-30 18:58:25 -04:00
jamesagnew f373abf74c License header updates 2019-09-30 15:32:49 -04:00
James Agnew 066c9a7fb7 Improvements to AutohrizationInterceptor create handling 2019-09-30 15:07:23 -04:00
Diederik Muylwyk aeef8c1ab5
Merge pull request #1518 from jamesagnew/1517-need-account-for-property-values-that-exceed-500-characters-in-length-for-loinc
Resolve "Need account for property values that exceed 500 characters in length for LOINC."
2019-09-30 15:00:08 -04:00
Diederik Muylwyk 396f358f2d Support for long concept property values has been added. 2019-09-30 14:40:31 -04:00
Diederik Muylwyk a324e51efa
Merge pull request #1516 from jamesagnew/1512-need-to-implement-the-ancestor-filter-with-in-operator-for-loinc
Resolve "Need to implement the ancestor filter with IN operator for LOINC"
2019-09-30 10:37:25 -04:00
Diederik Muylwyk dbd5331f5a Support for ancestor filter with IN operator for LOINC has been added. 2019-09-30 10:25:29 -04:00
jamesagnew 5509478566 License header update 2019-09-30 10:13:09 -04:00
James Agnew 0bee7a7b53 Test fix 2019-09-30 10:12:49 -04:00
James Agnew c8ce07c40e Deprecate redundant IVersionSpecificBundleProvider method 2019-09-30 09:45:31 -04:00
Diederik Muylwyk 7eaa5d5574 Merging master into working branch. 2019-09-30 09:41:43 -04:00
Diederik Muylwyk 1b2892f475
Merge pull request #1505 from jamesagnew/1454-need-to-implement-the-ancestor-and-descendant-filters-for-loinc
Resolve "Need to implement the ancestor and descendant filters for LOINC."
2019-09-30 09:39:32 -04:00
James Agnew 557a8ccc66
Add top level support for ElasticSearch (#1514)
* ElasticSearch work

* Add ElasticSearch properties builder

* Clean up POM

* Remove redundant project

* Try to troubleshoot embedded elasticsearch

* Another test attempt

* Add credentials to elasticsearch config

* Work on lastn

* Address review comments

* A couple of test fixes
2019-09-30 09:30:39 -04:00
Diederik Muylwyk 0386448b3f Initial commit for work on ancestor filter with IN operator for LOINC. 2019-09-30 09:21:32 -04:00
Diederik Muylwyk 8b5888723a Merging master into working branch. 2019-09-30 09:15:55 -04:00
Diederik Muylwyk ac9c10a4ee Merging master into working branch. 2019-09-30 09:15:01 -04:00
James Agnew 663431f571 Fix docs issue 2019-09-27 16:57:14 -04:00
James Agnew 27c637b8d7 Docs fix 2019-09-27 14:02:42 -04:00
Diederik Muylwyk 3e173bb07c Merging master into working branch to resolve conflicts.
# Conflicts:
#	src/changes/changes.xml
2019-09-26 20:19:22 -04:00
Diederik Muylwyk 5f17fb30b4 Address review comments. 2019-09-26 20:15:55 -04:00
James Agnew ed78a5f06d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-26 16:56:42 -04:00
James Agnew 3870c14a6c Remove unused contructors 2019-09-26 16:42:39 -04:00
James Agnew 77d15a1836
Fix failing tests due to race conditions
* Work on failing tests

* Temporary downgrade of fhir core

* Work on failing build

* Fix pom

* Don't upload codecov

* Restore codecov

* Restore all tests

* Keep hammering away at intermittent test failures

* More test fixes

* Keep chipping away at these...

* Add some extra checks

* Work on tests

* More test logging

* More logging

* This might be it!

* Final build fixes?

* Address some review comments

* A couple more corrections
2019-09-26 16:11:15 -04:00
James Agnew cc0df9850c Make sure the validator can get at codes defined in notpresent
codesystems
2019-09-26 14:44:09 -04:00
James Agnew 94f87e7282 Allow term service to return codes 2019-09-26 12:46:41 -04:00
Diederik Muylwyk b6400764c4 Removed scratch notes. 2019-09-26 11:42:26 -04:00
Diederik Muylwyk efae77a330 Added changelog entries. 2019-09-26 11:36:55 -04:00
Diederik Muylwyk a4f9894104 Merging master into working branch. 2019-09-26 10:41:34 -04:00
Diederik Muylwyk e098cea07f Throw UnsupportedOperationException for LOINC ancestor filter with IN operator; ignore tests. See #1512 in GitHub. 2019-09-26 10:39:55 -04:00
James Agnew ddb5605830 Improve test logging 2019-09-25 22:17:47 -04:00
Diederik Muylwyk 4f7db37d8e Additional progress for ancestor/descendant filters; only ancestor/in remains. 2019-09-25 21:36:36 -04:00
James Agnew 99787d14f1 Add some test logging 2019-09-25 21:20:36 -04:00
James Agnew 8657afb01e
Fix intermittent test failures regarding search (#1509)
* Add some logging

* Add more test logging

* Work on some test logging

* Fix compile error

* Work on codecov

* Work on codecov

* Remove test debug messages
2019-09-25 20:15:21 -04:00
Diederik Muylwyk 7c5cf9f1f4 Incremental progress for ancestor/descendant filters. 2019-09-25 17:33:45 -04:00
Diederik Muylwyk 9b4671c05e Added a bunch of tests for ancestor/descendant filters. 2019-09-25 16:52:08 -04:00
Diederik Muylwyk 729d3a3d3b Fix intermittent test failure. 2019-09-25 15:32:39 -04:00
James Agnew 4570e50c03 Fix nullability on one column 2019-09-25 15:31:26 -04:00
James Agnew e21c676dab Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-25 15:27:31 -04:00
James Agnew cddaf058a2 Add some extra test logging 2019-09-25 15:27:17 -04:00
Diederik Muylwyk 30588bf8ee Completed fixing tests after enabling pre-expansion by default. 2019-09-25 14:29:50 -04:00