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6800 Commits

Author SHA1 Message Date
jamesagnew 096f310cae Increase visibility 2020-08-09 14:23:06 -04:00
James Agnew 8f6d08dd58
Fix #2022 - Invalidate caches on expunge (#2029) 
* Fix #2022 - Invalidate caches on expunge

* Rename changelog file
 2020-08-09 14:14:28 -04:00
jamesagnew 49f4f3ef62 Add license headers 2020-08-09 13:23:45 -04:00
Jonathan Leitschuh 7f69352627
Use HTTPS instead of HTTP to resolve dependencies (#1708) 
This fixes a security vulnerability in this project where the `pom.xml`
files were configuring Maven to resolve dependencies over HTTP instead of
HTTPS.

Signed-off-by: Jonathan Leitschuh <Jonathan.Leitschuh@gmail.com>
 2020-08-09 13:04:16 -04:00
James Agnew 8e0023c385
Disable referential integrity for some paths (#2025) 
* Disable referential integrity for some paths

* Add changelog

* Remove unneeded file
 2020-08-09 07:09:37 -04:00
James Agnew 0de0b88aa0
Fix TestpageOverlay XSS Vulnerability (#2027) 
* Resolve XSS vulnerability

* Add changelog
 2020-08-09 07:06:11 -04:00
James Agnew 63ef2ce006
Fix #2012 - Always filter total from search results when consent interceptor in use (#2020) 
* consent bug test

* Fix #2012 - Always filter total from search results when consent
interceptor in use

* Add changelog

* Address coverage issues

Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
Co-authored-by: jvi <jvi@trifork.com>
 2020-08-07 09:16:02 -04:00
Tadgh 6cb39a14ea
Empi doc updates (#2021) 
* Update documentation about EMPI automatic linking

* Further documentation updates
 2020-08-06 16:45:04 -04:00
Tadgh 605c3d8f8a
Merge pull request #2019 from jamesagnew/minimum-data-required-for-empi 
Add a Minimum data requirement for EMPI processing
 2020-08-06 12:46:03 -07:00
Tadgh 5a720d45c3 Comment updates 2020-08-06 11:33:38 -07:00
Tadgh 1aa7d1c2d4 Remove dead comment 2020-08-06 11:32:41 -07:00
Tadgh c4fd055e52 propagate class rename 2020-08-06 11:32:06 -07:00
Tadgh d6ad434339 Rename class, add log 2020-08-06 11:02:20 -07:00
Tadgh ed618613a6 Add type-based filtering to filter service. Add tests 2020-08-06 10:58:37 -07:00
Tadgh c92a77c889 Introduce Filtering service 2020-08-05 21:48:06 -07:00
Tadgh 87d14f26fe Begin with a broken test 2020-08-05 16:20:41 -07:00
James Agnew 5d9d4070fb
Fix an issue with binary storage not updating correctly if a retry (#2014) 
interceptor is present
 2020-08-05 09:14:40 -04:00
Tadgh 750d693fc3
Merge pull request #1984 from jamesagnew/batch-empi-job 2020-08-04 13:21:25 -07:00
jamesagnew 03f7289ac8 Add test for #2012 2020-08-04 09:16:47 -04:00
Tadgh 3b9f9e6cc3 Rename operation 2020-08-03 21:35:12 -07:00
Tadgh b8a3a6e356 Update test 2020-08-01 17:35:04 -07:00
Tadgh da30772a01 Remove dead methods, constants, and add a javadoc 2020-08-01 13:19:52 -07:00
Tadgh 160155bd8f Update test to ensure start state is correct 2020-08-01 13:17:51 -07:00
Tadgh ac5d261a7f Doc updates and flip logic order in SearchParamSVc 2020-08-01 13:16:50 -07:00
Tadgh ad887428b3 Add removeAll function to DeleteConflictList 2020-08-01 13:15:22 -07:00
Tadgh 46251af81a Rename queue to channel 2020-08-01 13:12:32 -07:00
Tadgh 2cf48eb9b9 Move field length into constants 2020-08-01 13:11:33 -07:00
Tadgh c8dfd00864 Remove dead comments 2020-08-01 13:09:23 -07:00
Tadgh 3068fe8c1a Rework escape hatch to error 2020-08-01 13:08:29 -07:00
Tadgh 0d90bbcc9c Add escape hatch to while loop 2020-08-01 13:06:25 -07:00
Tadgh b0d301b245 Remove constructor argument that was unused 2020-08-01 13:04:22 -07:00
Tadgh 995c188305 implement function for all concrete classe 2020-08-01 13:03:37 -07:00
Tadgh 0a4d81eb85 Move getNextBatch into IResultIterator 2020-08-01 13:00:55 -07:00
Tadgh 1d6a26bf1d Remove unused method 2020-08-01 11:49:07 -07:00
Tadgh 0ef1665061 Merge branch 'batch-empi-job' of github.com:jamesagnew/hapi-fhir into batch-empi-job 2020-08-01 11:48:27 -07:00
Tadgh efaf09fbfa Fix java.lang.string in empiLink entity 2020-08-01 11:47:00 -07:00
Tadgh 8b378995b2 Doc updates 2020-08-01 11:45:47 -07:00
Tadgh 4c64cec8fa
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_operations.md 
Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-08-01 11:40:24 -07:00
Tadgh 9c5b69bb6e
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_operations.md 
Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-08-01 11:37:11 -07:00
Tadgh 3179e34bce Merge branch 'batch-empi-job' of github.com:jamesagnew/hapi-fhir into batch-empi-job 2020-08-01 11:36:21 -07:00
Tadgh e67ee36492 Renamed and modified reset constant for better naming 2020-08-01 11:36:14 -07:00
Tadgh dfecca33bc
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_operations.md 
Co-authored-by: Ken Stevens <khstevens@gmail.com>
 2020-08-01 11:32:30 -07:00
Tadgh 7299162f10 Update doc phrasing 2020-08-01 11:31:28 -07:00
Tadgh 4d3cecaab2 Fix pointcutlatch issue 2020-08-01 11:12:28 -07:00
Tadgh bd22b0239f Add caveat 2020-07-31 09:13:38 -07:00
Gary Graham 63cc10c919 Updare license 2020-07-30 22:10:59 -07:00
Gary Graham 9f0af3c21c docs for batch run 2020-07-30 19:25:30 -07:00
Tadgh f731e44303 Partial addition of docs for batch run 2020-07-30 18:21:35 -07:00
Tadgh 07f9e8466b Add documentation for -clear 2020-07-30 15:23:43 -07:00
Tadgh 8b4fa8048f Add changelog 2020-07-30 14:42:25 -07:00