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2045 Commits

Author SHA1 Message Date
James Agnew
5bc554949b
Remove deleted resources from cached search results (#1732) 
* Remove deleted resources from cached search results

* Add changelog

* Add tests
 2020-02-28 10:57:26 -05:00
James Agnew
60f16dd91d
Update to 4.3.x core JAR (#1715) 
* Added optionality for adding resource fetcher

* Added coverage that proves invocations

* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences

* Added optionality for adding resource fetcher

* Added coverage that proves invocations

* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences

* Start working on converter

* Account for compile errors

* Test fix

* Work no validator

* Work on getting core working

* Add some test coverage

* Many test fixes

Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
 2020-02-17 14:28:29 -05:00
jamesagnew
ddc7b601ee Version bump to 4.3.0-SNAPSHOT 2020-02-16 19:23:22 -05:00
jamesagnew
4fd80cfca7 Bump to 4.2.0 2020-02-16 19:00:15 -05:00
James Agnew
c5c1e3196b Resolve FIXMEs (#1705) 
* Resolve FIXMEs

* Test fixes

* Test fixes

* Clean up unused code

* Add some test coverage

* Test fix

* Test fix

* Avoid intermittent
 2020-02-09 08:39:46 -05:00
Ken Stevens
2545fc6e3d Merge remote-tracking branch 'remotes/origin/master' into ks-20200120-near-search 
# Conflicts:
#	hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_2_0/changes.yaml
 2020-01-29 17:06:02 -05:00
dionmcm
00fdc978cc narrative gen removed old code and enhanced error message 
I ran into an issue trying to use the old .class style property. The validation message was useful, but I spotted some unreachable code investigating which I've removed. I also enhanced the configuration exception to indicate what was wrong with a supplied key and expected extension types.
 2020-01-29 05:58:22 -05:00
Ken Stevens
f2e8037c90 Merge remote-tracking branch 'remotes/origin/master' into ks-20200120-near-search 2020-01-22 15:06:52 -05:00
James Agnew
39ff698dd2
Parser performance tweaks (#1660) 
* Parser improvements

* Parser tweaks

* Fix test

* Add changelog

* Bump spring mvc version

* Bump spring version

* Test fix?
 2020-01-22 14:44:12 -05:00
Ken Stevens
9413e8f198 r4 works. But distance calculation still needs to be fixed. 2020-01-22 11:59:03 -05:00
James Agnew
c0e929dacb
Copy identifiers to placeholder resources (#1675) 
* Copy identifiers to placeholder resources

* Add tests

* Maven cleanup

* Still messing around with azure

* Adding to logging

* More azure work

* One more attempt

* More messing around with azure

* Test fix

* Another caching attempt

* More work on azure pipeline

* Fix pipeline file

* Keep working on pipeline

* More work on azure

* More azure

* More azure work

* More azure
 2020-01-21 06:09:06 +09:00
jamesagnew
634458c447 License header update 2020-01-17 00:16:56 -05:00
James Agnew
0385c25aa3 Fix FHIR version defaults 2020-01-15 14:03:59 +08:00
James Agnew
1390ea3c06
Update FHIR R5 structures to 4.2.0 version (#1665) 
* Work on upgrading core

* Work on R5 updates

* Work on core updates

* Test fix

* Update model version properties file for R5

* Bump core version

* Test fixes

* Add 4.2.0-SNAPSHOT version to versions page in docs
 2020-01-14 10:27:01 +08:00
Petro Mykhaylyshyn
8ed3dcc9ac [(fixjsongenerationtomaster)] Remove unused import. 2020-01-13 13:37:54 +08:00
Petro Mykhaylyshyn
fdab81361c [(fixjsongenerationtomaster)] When max cardinality in profile is changed to 1 output JSON contain an array. 2020-01-13 13:37:54 +08:00
Petro Mykhaylyshyn
a234b1f8a9 [(fixjsongeneration)] When max cardinality in profile is changed to 1 output JSON should still contain an array. 2020-01-13 13:37:54 +08:00
jamesagnew
3ac4172bc4 License header versions 2020-01-11 23:23:02 -05:00
Diederik Muylwyk
8615d10730 Fix typo. 2019-12-31 09:27:26 -05:00
Diederik Muylwyk
48f7ee5afb Rolling back previous unnecessary changes. 2019-12-31 09:25:56 -05:00
Diederik Muylwyk
170b607992 Added some FIXMEs. 2019-12-30 18:43:15 -05:00
Diederik Muylwyk
856993edf8 Moved changelog entry, and added clarifying comments to DateRangeParam. 2019-12-30 15:29:35 -05:00
Diederik Muylwyk
4eaeb7ef9e Implemented isDateWithinRange() and supporting methods. 2019-12-30 14:35:51 -05:00
Diederik Muylwyk
d8133487b2 Initial commits. 2019-12-23 17:14:47 -05:00
James Agnew
e1f2d044ed Add errorprone back into build 2019-12-15 09:42:51 -05:00
jamesagnew
ba8f50f0c8 Docs updates 2019-12-14 18:19:09 -05:00
James Agnew
d277d3fed5 Docs updates 2019-12-10 16:10:09 -05:00
James Agnew
f58fba6f04
Some test cleanup (#1616) 
* Some test cleanup

* Add test

* More test logging

* More docs cleanup

* Add test logging
 2019-12-02 11:00:18 -05:00
James Agnew
86bd9a28fe
Fix to valueset expansion logic (#1613) 
* Fox to valueset expansion logic

* Work on docs

* Docs tweaks

* Docs tweaks

* Fix test

* Remove unused class

* Add changelog
 2019-12-01 21:21:19 -05:00
James Agnew
ca620d652f
Add tests (#1606) 
* Support chained HAS

* Add some tests

* Add some cleanup

* Work on intermittent tests
 2019-11-24 10:11:49 +01:00
James Agnew
51b608188b
Some CI surefire improvements (#1602) 
* Some CI surefire improvements

* Build tweak

* More tweak

* Update azure-pipelines.yml for Azure Pipelines

* Update azure-pipelines.yml for Azure Pipelines

* One more CI attempt

* Update azure-pipelines.yml for Azure Pipelines

* Tweak command line

* Another build test fixc

* More build cleanup
 2019-11-23 19:51:02 +01:00
James Agnew
a2f77b23d2
Fix #1583 - Index local refs in canonical types (#1593) 
* Fix #1583 - Index local refs in canonical types

* Add fix to pre-expansion

* Test fix

* Rework ID handling

* Test fixes

* Fix test
 2019-11-23 16:32:37 +01:00
James Agnew
74159dcb26
Work on refactoring how PIDs work (#1580) 
* Start work on refactoring how PIDs work

* Some test fixes

* Test fixes

* Test fixes

* Restore accidentally deleted line

* One more tweak

* Rework resource link extraction

* Test fix

* Split out transaction processor

* Updates

* Test fix

* Test fixes

* Test fixes

* Clean up LGTM warning

* Fix compile failure

* One more test fix

* Fix LGTM issue

* Add spot for metadata

* Add test logging

* Remove testing code

* More test logging

* Add some test logging

* Attempty to fix intermittent test failure

* Improve exception tracking

* Work on simplifying search param registry

* Fix compile

* Fix compile errors

* Fix two test bugs
 2019-11-17 14:35:19 -05:00
James Agnew
497a96ae68 Version bump for next round of development 2019-11-12 22:09:21 -05:00
jamesagnew
f99ad981b5 Version bump to 4.1.0 2019-11-12 16:08:20 -05:00
James Agnew
aa0301084b
Don't succeed validation on unknown codesystem (#1575) 
* Don't succeed validation on unknown codesystem

* Test fixes

* Work on error messages

* Work on code validation API

* work on tests

* Work on validation

* Test fix

* Update DSTU3 validation reources

* Upgrade structures

* Test fixes
 2019-11-12 14:35:49 -05:00
James Agnew
1a348abaf5 Try to fix 2 intermittent test failures 2019-11-08 08:45:08 -05:00
jamesagnew
7c8342dcc1 Add some test logging 2019-11-08 05:53:59 -05:00
James Agnew
ebc52e6b48 Correctly handle below expansion with missing system 2019-11-07 09:28:24 -05:00
James Agnew
0b9f921c3e Fix NPE in xml parser 2019-11-04 09:49:49 -05:00
jamesagnew
9c93d5d7f7 Test fixes 2019-11-04 07:04:26 -05:00
James Agnew
3b6709e1d1
Merge pull request #1566 from jamesagnew/ja_20190928_rationalize_search_param_extractor 
Rationalize search param extractors across FHIR versions
 2019-11-02 16:18:23 -04:00
James Agnew
48930de31c Attempt to resolve #1356 2019-11-02 16:15:37 -04:00
Ken Stevens
1fd3948b12
Merge pull request #1572 from jamesagnew/ks-source-subscriptions 
fixed in-memory search by _source for Dstu3
 2019-10-30 16:20:14 -04:00
James Agnew
e96500d54f Add a test 2019-10-30 15:51:46 -04:00
Ken Stevens
97f4de553a fix test. this is better 2019-10-30 15:24:43 -04:00
Ken Stevens
3ceb4085cb fix test (not super happy about this fix, but I think it's the right thing to do) 2019-10-30 15:21:21 -04:00
Ken Stevens
21c591eaf2 ready for review 2019-10-30 13:49:10 -04:00
James Agnew
b90f285218 Merge branch 'master' into ja_20190928_rationalize_search_param_extractor 2019-10-30 08:41:14 -04:00
James Agnew
007cfaf00e
Don't error out on missing CS (#1570) 
* Don't error out on mi9ssing CS

* Add tests

* Add a bit of test coverage

* One more test
 2019-10-30 08:38:39 -04:00