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hapi-fhir
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8202 Commits

Author SHA1 Message Date
Nick Goupinets 3863e82a59
Fixed bug with choice children (#2714) 2021-06-08 08:24:13 -04:00
James Agnew dc627dc019
Add bulk export authorization layer (#2712) 
* Add bulk export authorization layer

* Add docs

* Version bump

* Authorize any

* Add bulk export - all

* Address lgtm issue
 2021-06-06 20:47:43 -04:00
jamesagnew 4f1f09abb1 Merge branch 'master' of github.com:hapifhir/hapi-fhir 2021-06-04 20:40:51 -04:00
jamesagnew 3e4522be86 Add logging 2021-06-04 20:40:40 -04:00
Kevin Dougan SmileCDR 0143e83156
Added another try-with-resources local variable based on a lgtm.com report. (#2711) 2021-06-04 15:17:27 -04:00
jamesagnew 4f6c1eaedb Add license header 2021-06-04 14:50:10 -04:00
jamesagnew 899caa1913 Update transaction service visibility 2021-06-04 14:18:19 -04:00
James Agnew 62be623cf5
Add support for ICD-10-CM (#2702) 
* Add support for ICD-10-CM

* Have this working

* Fix LGTM issues

* Test fix
 2021-06-03 19:55:16 -04:00
Ken Stevens 94d6b15db9
_filter searchparam should not appear in cap stmt if disabled (#2706) 
* issue reproduced and fixed

* changelog

* cleanup
 2021-06-03 18:45:49 -04:00
Ken Stevens c498522c78
search by source reported incorrect size (#2705) 
* issue reproduced in test and fixed

* changelog
 2021-06-03 18:19:43 -04:00
jmarchionatto d574c4625b
Merge pull request #2704 from hapifhir/2703-@RequiresDocker-annotation-check-fails 
Fix DockerRequiredCondition check.
 2021-06-03 15:58:38 -04:00
juan.marchionatto 473de64ddc Fix DockerRequiredCondition check. 
Add @RequiresDocker annotation to two tests.
 2021-06-03 14:14:47 -04:00
michaelabuckley 73afed86d7
Merge pull request #2701 from hapifhir/1811-generalize-request-tracing 
Expose tracing code for sharing.
 2021-06-03 09:10:59 -04:00
Michael Buckley 4d6c35ac12 Hide constructor for static helper 2021-06-03 09:09:54 -04:00
Michael Buckley 80266a20a2 Pull request tracing out for sharing 2021-06-02 21:25:06 -04:00
jamesagnew 9401ecaf95 Merge branch 'master' of github.com:hapifhir/hapi-fhir 2021-06-02 16:47:12 -04:00
jamesagnew a0366befc4 Forward port fix 2021-06-02 16:47:02 -04:00
James Agnew 1d2b47c9fb
Update endpoint validation interceptors (#2698) 2021-06-02 05:39:01 -04:00
James Agnew fe763dd2d6
Upgrade deps (#2695) 
* Upgrade deps

* Fix build error

* Branch tweak

* Build fix

* Build fix

* Undo bump

* Test fixes
 2021-06-01 12:03:29 -04:00
jamesagnew f5c75e80de Credit for #2693 2021-06-01 10:53:53 -04:00
rbhman dfde993f2d
Allow lower case error message to also trigger retry (#2693) 
* Allow lower case error message to also trigger retry

* similar data integrity exception on different table

Co-authored-by: Hedman, Bruno <bruno.hedman@rmp.uhn.ca>
 2021-06-01 10:50:06 -04:00
James Agnew 05ac88bc21
Add initiate bulk export pointcut (#2692) 
* Add initiate bulk export pointcut

* Add changelog

* Test fixes
 2021-05-31 16:05:09 -04:00
Patrick Werner 94bd2400e3
Merge pull request #2689 from me-d4l/fix/update-chaelog-for-2682 
Add CHANGELOG entry for ticket 2682
 2021-05-31 12:16:13 +02:00
morten.ernebjerg b9931dfb03
Add CHANGELOG entry for ticket 2682 2021-05-31 08:43:23 +02:00
James Agnew a2950324ef
Avoid SQL based transaction dupe check (#2688) 
* Avoid SQL based transaction dupe check

* Add changelog

* Test fixes

* Test fixes
 2021-05-30 20:26:36 -04:00
James Agnew 786112284b
Bump spring version (#2687) 2021-05-30 19:04:14 -04:00
James Agnew 8d377fbf76
Add bulk import instrumentation (#2685) 
* Add batch job instrumentation

* Add bulk import instrumentation

* Fix build
 2021-05-30 11:47:51 -04:00
Patrick Werner f34dd7ecd8
Merge pull request #2683 from me-d4l/feature/ignore-package-id-case 
Make package ID handling case-insensitive (#2682)
 2021-05-29 17:12:43 +02:00
jamesagnew 9aaf5ec5d8 Add logging to the test server 2021-05-28 11:23:57 -04:00
jamesagnew 1703568840 Merge branch 'master' of github.com:hapifhir/hapi-fhir 2021-05-28 05:42:03 -04:00
jamesagnew 5b93affca1 Add logging to test server 2021-05-28 05:41:53 -04:00
James Agnew 24b3f0f30d
Enable mass ingestion mode (#2681) 
* Work on fixes

* Work on counts

* Enable mass ingestion mode

* Add changelog

* Test fix

* Test fix

* Test fixes

* Fixes

* Test fix

* Test fix
 2021-05-27 18:43:51 -04:00
jamesagnew d70bbad6f1 Expand access 2021-05-27 12:15:37 -04:00
Nick Goupinets 52ce8e35a7
Merge pull request #2679 from hapifhir/2678_mdm_identifier 
Updated identifier matcher to only match on non-empty values
 2021-05-27 09:35:07 -04:00
morten.ernebjerg 69d3e3f3ca
Add further test for non-matching IDs 2021-05-27 15:18:45 +02:00
morten.ernebjerg cbfca6a560
Make package ID handling case-insensitive 2021-05-27 14:57:07 +02:00
jamesagnew 8636e4f155 Test fix 2021-05-27 07:30:09 -04:00
James Agnew c8c596aff4
Fix date search on period with no end (#2676) 
* Add test

* Working test

* Update test

* Account for date fixes

* Add changelog

* Add setting

* Test fixes

* Test fix
 2021-05-26 21:03:53 -04:00
jamesagnew f774653239 License header updates 2021-05-26 18:18:42 -04:00
James Agnew 7a83c76e65
Add validation suppression mode (#2675) 
* Add validation suppression mode

* Add changelog

* Compile fix
 2021-05-26 17:41:48 -04:00
Nick Goupinets dc89a4abd7 Updated identifier matcher to only match on non-empty values 2021-05-26 15:13:43 -04:00
Ken Stevens af44b9c7a0
Ks 20210526 accurate total (#2677) 
* begin with failing test

* fixed

* changelog
 2021-05-26 12:20:49 -04:00
Nick Goupinets cc734613a8
Merge pull request #2668 from hapifhir/2667_terserutil_merge_empty_fields 
Fixed primitive field merging
 2021-05-26 09:54:38 -04:00
IanMMarshall 5c6ef2e247
Merge pull request #2674 from hapifhir/2673-fix-npe-on-populate-display-interceptor 
Add null check on code lookup result.
 2021-05-25 12:26:25 -04:00
Nick Goupinets 0c50d51e2c Merge branch 'master' into 2667_terserutil_merge_empty_fields 2021-05-25 11:48:56 -04:00
ianmarshall a878ef2496 Add null check on code lookup result. 2021-05-25 09:09:41 -04:00
ianmarshall 8e552916ee Add null check on code lookup result. 2021-05-25 09:07:28 -04:00
Kevin Dougan SmileCDR 6167fb2415
2669 - Cache-Control no-store returns excessive resources (#2671) 
* First attempt at a Unit Test.

* Removed sample test data.

* Added failing Unit Test - now to find out why.

* Added a _count param to more exactly match the provided customer scenario.

* Added a possible fix for this sceanrio.

* Work on this

* Have a working fix, not yet fully tested

* Test fix

Co-authored-by: jamesagnew <jamesagnew@gmail.com>
 2021-05-25 08:49:25 -04:00
ianmarshall 1b387a5740 Add null check on code lookup result. 2021-05-24 22:14:02 -04:00
ianmarshall f2627959c2 Add null check on code lookup result. 2021-05-24 22:09:44 -04:00