29545d9adc
Merge pull request #2879 from hapifhir/mail_cleanup
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fix SimpleJavaMail configuration username and password handling
2021-08-10 10:48:56 -04:00
f68040aae9
fix SimpleJavaMail configuration username and password handling
2021-08-10 10:45:30 -04:00
3edb59475c
Merge pull request #2877 from hapifhir/2876-npe-mdm-resource-util
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NPE in MdmResourceUtil
2021-08-10 08:13:19 -04:00
97f88202eb
Fix Changelog typo
2021-08-10 08:12:54 -04:00
1dfaf73066
Merge branch 'master' into 2876-npe-mdm-resource-util
2021-08-09 19:21:58 -04:00
bfd9dffdbe
Allow jira field in changelog
2021-08-09 19:09:40 -04:00
d5fe1eeef7
Move test out of IT
2021-08-09 16:13:47 -04:00
416a52c679
Add changelog, fix code
2021-08-09 16:02:19 -04:00
1e0f843d6c
2852 - Simplify java mail code ( #2874 )
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* testing
* [2852] adding SimpleJavaEmail
* [2852] refactor email sender code
* [2852] dependency cleanup
* [2852] add missing dependency
* [2852] add missing spring framework test dependency
* [2852] add change log
* [2852] add change log
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2852-simplify-java-mail-code.yaml
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* [2852] minor test code cleanup
* [2852] add more tests
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2021-08-09 15:59:47 -04:00
a7f0929405
Merge pull request #2875 from hapifhir/bump-version-5-6-0
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Bump version to 5.6.0-PRE1-SNAPSHOT
2021-08-09 10:19:32 -04:00
fa2b4ea0d7
Add version number
2021-08-06 14:08:10 -04:00
4fadc62066
Bump Hapi Version
2021-08-06 13:44:04 -04:00
3c598e2ff8
Fix loinc designation issue with FormalName ( #2865 )
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* Fix loinc designation issue with FormalName
* Changed Loinc designation name to 'FullySpecifiedName'
2021-08-06 10:59:01 -04:00
35d3e3689b
2829 - Add DSTU3 Support To UploadTerminologyCommand ( #2832 )
2021-08-05 13:07:50 -04:00
67682a86fb
Merge pull request #2862 from hapifhir/mb-20210804-combo-index-ioob
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Hack to fix a weird IOOB error we can't reproduce.
2021-08-04 16:24:47 -04:00
d85a4e5ec2
Hack to fix a weird IOOB error we can't reproduce.
2021-08-04 16:08:38 -04:00
66e1f10f5f
Merge pull request #2821 from hapifhir/issue-2786-upload-terminology-command-add-explicit-current-version-control
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Issue 2786 upload terminology command add explicit current version control
2021-08-03 16:55:49 -04:00
cb68c59fb5
Remove validation in code which will never reached for the conditions.
2021-08-03 15:39:02 -04:00
45549d2bb9
Fix broken ITs.
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Add error message for non-snapshot upload with current version = false combination.
2021-08-03 14:11:14 -04:00
1ff1954cba
Merge branch 'master' into issue-2786-upload-terminology-command-add-explicit-current-version-control
2021-07-30 11:20:23 -04:00
4e8b1719f3
Add test for fixed use case
2021-07-30 10:48:10 -04:00
f5dfc3a5ed
New reindex spring batch operation ( #2845 )
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* first sweep to add new $reindex job
* first cut done. next up integration test.
* start roughing out reindex everything
* Failing test
* test passes
* add BundleUtil helper method
* rough in processEverything
* rough in processEverything
* fix mock test
* merge master
* Make BaseJpaTest.mySrd lenient.
* fix test
* reindex everything works with FIXMEs
* reindex everything more tests
* moar tests
* moar tests
* fix test
* fix test
* fix regression and fix test
* fix test cycle
* fixme
* fix test
* test provider layer
* reindex everything partition aware
* yay last fixme!
* run reindex in partitioned threads
* add fixmes for areas that require extra testing
* added transaction and log message
* manual integration testing
* changelog
* reindex all partitions
* bump hapi version
* fix test
* moar test
* pre-review cleanup
* fix javadoc
* review feedback
* review feedback
* review feedback
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_5_0/2845-reindex-operation.yaml
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* review feedback
* review feedback
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/delete/job/ReindexJobTest.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/delete/job/ReindexJobTest.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/MultitenantBatchOperationR4Test.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/ResourceSearch.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Update hapi-fhir-server/src/main/java/ca/uhn/fhir/rest/api/server/storage/IDeleteExpungeJobSubmitter.java
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
2021-07-29 19:18:49 -04:00
264dfee099
Merge branch 'master' into issue-2786-upload-terminology-command-add-explicit-current-version-control
2021-07-29 16:21:56 -04:00
1fcb36d84a
Fix implementation to work also for use case where version is being updated.
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Use property instead of parameter.
2021-07-29 15:54:00 -04:00
1b9761c91b
Merge pull request #2840 from hapifhir/issue-2835-cve-jetty
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bump Jetty for CVEs
2021-07-28 10:51:59 -04:00
e076b30eef
bump Jetty for CVEs
2021-07-27 15:49:00 -04:00
7c1d87b662
Merge pull request #2834 from hapifhir/issue-2833-commons-compress-cve
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Bump commons-compress version
2021-07-27 11:00:19 -04:00
07cb3ff427
Bump commons-compress version
2021-07-27 09:14:05 -04:00
f957661dda
Patient ID Partition Mode should support conditional create ( #2828 )
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* Fixes
* Test fix
* Add changelog
* Test fixes
* Test fixes
* Docs tweak
* Partitioning fixes
* Import fix
* Fix test data
2021-07-26 14:18:58 -04:00
6bbb403fd1
When Client Id Strategy is set to NOT_ALLOWED, permit system requests to create resources ( #2827 )
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* resolved 2826
* fix regression
2021-07-23 19:10:19 -04:00
92ec113775
fixed bug ( #2824 )
2021-07-23 16:58:53 -04:00
91bbebad27
Merge pull request #2830 from hapifhir/mb-docker-mac-m1-arm
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Upgrade net.java.dev.jna dependency to support Mac M1 ARM architecture.
2021-07-23 16:50:31 -04:00
2539f49662
Add detail to changelog
2021-07-23 15:07:36 -04:00
d99f94e665
changelog
2021-07-23 15:00:48 -04:00
0a256fef77
Upgrade net.java.dev.jna dependency to support Mac M1 ARM architecture.
2021-07-23 14:58:10 -04:00
6f7f787813
fixed migration ( #2822 )
2021-07-22 14:07:10 -04:00
ad6f7a204c
Fix changelog syntax. Merge current master.
2021-07-22 10:49:16 -04:00
ae0665131b
Fix syntax.
2021-07-22 09:41:16 -04:00
a5e6674e84
Version bump to 5.5.0-PRE7-SNAPSHOT
2021-07-22 08:41:16 -04:00
d78fef6732
Fix NPE in IdHelperService ( #2819 )
2021-07-22 08:34:28 -04:00
8b8db82666
Enable Package Loader when partitioning is enabled with unnamed partitions ( #2808 )
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* Enable Package Loader when partitioning is enabled with unnamed partitions.
* Enable Package Loader when partitioning is enabled with unnamed partitions.
* Additional package loading problems found with partitioning.
* Additional package loading problems found with partitioning.
Co-authored-by: ianmarshall <ian@simpatico.ai>
2021-07-22 05:17:17 -04:00
6d37749be8
Add non unique combo search params ( #2809 )
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* Start work on nonunique combo search params
* Work on SQL
* Version bump
* A fix
* Test fixes
* Fixes
* Undo version bump
* Test fixes
* Resolve fixme
2021-07-21 19:14:14 -04:00
6af022062f
Fix issue with partitioning in patient ID compartment mode ( #2810 )
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* Fix issue with partitioning in patient ID compartment mode
* Add changelog
2021-07-21 17:21:23 -04:00
e0e52c666c
Add current-version parameter to upload-terminology command.
2021-07-21 16:18:35 -04:00
9f77c57e5a
Widen access for utility methods
2021-07-20 17:30:26 -04:00
0ebf274d36
Merge pull request #2806 from hapifhir/2805-improve-package-error-messages
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Add details when we fail to load an element of a package definition.
2021-07-20 15:41:05 -04:00
cbb9a4355a
Add details when we fail to load an element of a package definition.
2021-07-19 17:59:54 -04:00
64f1643046
Added LOINC linguistic variants support ( #2803 )
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* Added linguistic variants for LOINC uploader
* Using static class
* Added the changelog
2021-07-19 14:17:56 -04:00
946080d709
Added ConsumerName to the loinc loader. ( #2800 )
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* Added ConsumerName to the loinc loader.
* Added extra test for coverage
* Added the changelog for LOINC CONSUMER NAME support
2021-07-16 13:30:42 -04:00
0235296ba7
Add support for bulk export of multiple types ( #2797 )
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* Add support for bulk export of multiple types
* Add changelog
2021-07-15 14:01:10 -04:00
Tadgh
Vadim Karantayer
Tadgh
VK-SMILECDR
Frank Tao
Kevin Dougan SmileCDR
michaelabuckley
Michael Buckley
jmarchionatto
juan.marchionatto
Ken Stevens
James Agnew
IanMMarshall