efc6809ea6
Replacing Hibernate Search 5 with Hibernate Search 6 ( #2190 )
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* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
86f254cd66
Bump datasource-proxy from 1.5.1 to 1.7 ( #2267 )
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* Bump datasource-proxy from 1.5.1 to 1.7
Bumps [datasource-proxy](https://github.com/ttddyy/datasource-proxy ) from 1.5.1 to 1.7.
- [Release notes](https://github.com/ttddyy/datasource-proxy/releases )
- [Changelog](https://github.com/ttddyy/datasource-proxy/blob/1.x/CHANGELOG.md )
- [Commits](https://github.com/ttddyy/datasource-proxy/compare/datasource-proxy-1.5.1...datasource-proxy-1.7 )
Signed-off-by: dependabot[bot] <support@github.com>
* Add changelog
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-04 10:32:52 -05:00
aa584d5b2d
Bump maven-dependency-plugin from 3.0.2 to 3.1.2 ( #2266 )
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Bumps [maven-dependency-plugin](https://github.com/apache/maven-dependency-plugin ) from 3.0.2 to 3.1.2.
- [Release notes](https://github.com/apache/maven-dependency-plugin/releases )
- [Commits](https://github.com/apache/maven-dependency-plugin/compare/maven-dependency-plugin-3.0.2...maven-dependency-plugin-3.1.2 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-01-04 06:49:12 -05:00
0ac9ea643a
Bump plexus_compiler_api_version from 2.8.5 to 2.8.8 ( #2243 )
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Bumps `plexus_compiler_api_version` from 2.8.5 to 2.8.8.
Updates `plexus-compiler-api` from 2.8.5 to 2.8.8
- [Release notes](https://github.com/codehaus-plexus/plexus-compiler/releases )
- [Commits](https://github.com/codehaus-plexus/plexus-compiler/compare/plexus-compiler-2.8.5...plexus-compiler-2.8.8 )
Updates `plexus-compiler-javac` from 2.8.5 to 2.8.8
Updates `plexus-compiler-javac-errorprone` from 2.8.5 to 2.8.8
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-01-04 06:18:36 -05:00
8df8ed7838
Bump hibernate version
2021-01-03 16:56:02 -05:00
57347ddb63
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2021-01-01 15:52:06 -05:00
ec712e086c
Version bump mockito
2021-01-01 15:50:00 -05:00
ed4d7d7eb6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2021-01-01 15:07:37 -05:00
f30999b053
License header updates
2021-01-01 15:07:23 -05:00
4373b47207
Library version bumps
2021-01-01 15:06:55 -05:00
e79114e2ec
Un-revert the MDM changes, now that issues have been addressed ( #2226 )
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* Backward compatibility changes
* Revert "Revert "Remove all references to Person from EMPI.""
* Updated docs
* Removed mdm channel references
* Initial implementation
* fix coarseness bug. Fix tests. reinitialize silly bean
* Add forgotten json file
* Generic provider PoC
* Refactored provider to use BundleBuilder
* Removed version-specific MDM providers
* Addressed code review comments
* Fixed after merge
* Fixed docs
* MDM SVG for Update Use Cases
* Removed obsolete docs
Co-authored-by: Nick <nick.goupinets@smilecdr.com>
Co-authored-by: Nick Goupinets <73255752+nvg-smile@users.noreply.github.com>
2020-12-17 10:12:53 -05:00
a689beffc5
Bump spring_version from 5.2.3.RELEASE to 5.2.9.RELEASE ( #2085 )
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Bumps `spring_version` from 5.2.3.RELEASE to 5.2.9.RELEASE.
Updates `spring-beans` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-context` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-context-support` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-core` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-jdbc` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-messaging` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-orm` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-test` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-tx` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-web` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-webmvc` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Updates `spring-websocket` from 5.2.3.RELEASE to 5.2.9.RELEASE
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.2.3.RELEASE...v5.2.9.RELEASE )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2020-12-14 14:29:34 -05:00
092da2e93f
Bump slf4j_version from 1.7.28 to 1.7.30 ( #2242 )
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Bumps `slf4j_version` from 1.7.28 to 1.7.30.
Updates `slf4j-android` from 1.7.28 to 1.7.30
Updates `slf4j-api` from 1.7.28 to 1.7.30
- [Release notes](https://github.com/qos-ch/slf4j/releases )
- [Commits](https://github.com/qos-ch/slf4j/compare/v_1.7.28...v_1.7.30 )
Updates `jcl-over-slf4j` from 1.7.28 to 1.7.30
- [Release notes](https://github.com/qos-ch/slf4j/releases )
- [Commits](https://github.com/qos-ch/slf4j/compare/v_1.7.28...v_1.7.30 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2020-12-14 10:49:19 -05:00
9036df25fa
2229 - Remove support for the upload-igpack CLI command. ( #2233 )
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* 2229 - Remove support for the upload-igpack CLI command.
* 2229 - Revert changes made to the ValidateCommand class since it only takes an igpack as a parameter and therefore, should NOT have been removed.
* 2229 - Remove the igpack option from the Validate command.
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_3_0/2229-remove-upload-igpack-command.yaml
Co-authored-by: James Agnew <jamesagnew@gmail.com>
Co-authored-by: Kevin Dougan <kevindougan@kevins-mbp.lan>
Co-authored-by: James Agnew <jamesagnew@gmail.com>
2020-12-14 09:50:16 -05:00
0dc0e91766
Credit for #2241
2020-12-14 06:06:07 -05:00
0938d72b51
Revert "Remove all references to Person from EMPI."
2020-12-09 14:57:00 -05:00
4352e0a61f
Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references
2020-12-03 11:28:21 -05:00
1b263f1c32
Bump jetty_version from 9.4.34.v20201102 to 9.4.35.v20201120 ( #2210 )
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Bumps `jetty_version` from 9.4.34.v20201102 to 9.4.35.v20201120.
Updates `jetty-http` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `jetty-servlets` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `jetty-io` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `jetty-continuation` from 9.4.34.v20201102 to 9.4.35.v20201120
Updates `jetty-security` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `jetty-servlet` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `jetty-server` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `jetty-util` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `jetty-webapp` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `jetty-xml` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Updates `websocket-api` from 9.4.34.v20201102 to 9.4.35.v20201120
Updates `websocket-client` from 9.4.34.v20201102 to 9.4.35.v20201120
Updates `websocket-server` from 9.4.34.v20201102 to 9.4.35.v20201120
Updates `jetty-maven-plugin` from 9.4.34.v20201102 to 9.4.35.v20201120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.34.v20201102...jetty-9.4.35.v20201120 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2020-12-02 14:47:10 -05:00
d63c580e82
Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references
2020-12-01 13:18:42 -05:00
1e5def260c
Bump woodstox version ( #2199 )
2020-11-27 19:49:06 -05:00
2a3b72db17
Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references
2020-11-27 16:54:04 -05:00
da75ff8da2
Credit for #2197
2020-11-26 10:08:56 -05:00
27cff8153b
Bump jetty_version from 9.4.30.v20200611 to 9.4.34.v20201102 ( #2176 )
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Bumps `jetty_version` from 9.4.30.v20200611 to 9.4.34.v20201102.
Updates `jetty-http` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `jetty-servlets` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `jetty-io` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `jetty-continuation` from 9.4.30.v20200611 to 9.4.34.v20201102
Updates `jetty-security` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `jetty-servlet` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `jetty-server` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `jetty-util` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `jetty-webapp` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `jetty-xml` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Updates `websocket-api` from 9.4.30.v20200611 to 9.4.34.v20201102
Updates `websocket-client` from 9.4.30.v20200611 to 9.4.34.v20201102
Updates `websocket-server` from 9.4.30.v20200611 to 9.4.34.v20201102
Updates `jetty-maven-plugin` from 9.4.30.v20200611 to 9.4.34.v20201102
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.30.v20200611...jetty-9.4.34.v20201102 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2020-11-19 20:20:01 -05:00
4bbe4a3ef7
Merge branch 'gg_20201105-remove-person-references' of https://github.com/jamesagnew/hapi-fhir into gg_20201105-remove-person-references
2020-11-19 14:56:31 -05:00
4378df7dcb
Removed more EMPI refs from the docs
2020-11-19 14:56:18 -05:00
953b662827
Merge branch '2161-refactor-empi' into gg_20201105-remove-person-references
2020-11-19 14:24:51 -05:00
75c0c25d7b
remove references to EMPI
2020-11-18 19:50:00 -05:00
0c31741eec
Version bump to 5.3.0-SNAPSHOT
2020-11-18 14:52:43 -05:00
4d441ad7f2
Version bump to 5.2.0
2020-11-18 06:30:20 -05:00
228e75b501
Bump core to latest versions ( #2154 )
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* Bump core to latest versions
* Compile fix
* Bump to non snapshot core library
2020-11-03 15:43:37 -05:00
6ccb7c8312
Bump HTTPClient version
2020-10-28 10:28:04 -04:00
783cbb3cf8
Bump postgres driver version
2020-10-26 19:34:50 -04:00
8000d2d0cf
SQL Join Rework ( #2086 )
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* switched to adding annotations. Just did a test with Token, but the sql looks clean.
* switched to adding annotations. Just did a test with Token, but the sql looks clean.
* added the other six index links
* trying different annotations
* Start testing
* Update resources on package install
* Add changelog
* Join rework
* CLean up SQL builder
* Add docs
* SP rework
* Join work
* Work on params
* Work on refactor
* Work on chains
* Work on joins
* Rework queries
* Work on queries
* Many more tests passing
* Refs test
* Work on sorting
* Work on tests
* More joins work
* Work on tests
* Work on queries
* Tests passing
* More test fixes
* Test fixes
* Work on SQL
* Tests passing
* Add some tests
* Add some tests
* License headers
* Use entity manager to get datasourcd
* One more fix
* Model cleanup
* Ongoing work
* Fixes
* Fixes
* Work on joins
* Ongoing fixes
* Merge conflict
* Cleanup
* clean up unused fields
* Work on join
* COmpile fix
* Rework querying
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/HibernateDialectProvider.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Address review comments
* Resolve fixmes
* Test fix
* Test fixes
* Test fix
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-10-26 05:24:26 -04:00
0fdff3e052
Credit for #2142
2020-10-23 10:33:49 -04:00
aa3da9b05f
Bump bootstrap version ( #2128 )
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* Bump bootstrap version
* Add changelog
* Resolve fixme
* Rmove test code
2020-10-12 20:47:14 -04:00
7d150858dc
Credit for #2118
2020-10-12 20:45:02 -04:00
bd6feec2f4
Initial credit for #2118
2020-10-12 17:19:15 -04:00
844624b6dd
RDF Support in HAPI FHIR ( #2118 )
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* RDF Support in HAPI FHIR
* Ability to read/write FHIR resources as RDF (turtle serialization)
* Test suite to test roundtrip-ability of RDF parser
* Add null checks to appease LGTM
* Correct null check logic
2020-10-12 17:16:00 -04:00
576f6efc39
Credit for #1607
2020-10-09 11:58:00 -04:00
e8d844f4f3
Merge branch 'master' into gg_20201008_baddeps
2020-10-09 07:53:19 -04:00
2134d40f1c
Account for timezones in lastUpdated search ( #2113 )
...
* Add test
* Fix
* Add changelog
* Test fixes
* Test fix
* Test fixes
* Resolve fixme
* Test fixes
* Remove debug logs
* Try to get CI tests passing again
2020-10-09 07:52:46 -04:00
375552ac49
Update hibernate core and validator
2020-10-08 14:15:57 -04:00
5a29fd9945
rollback the elastic changes
2020-10-06 17:20:11 -04:00
6ab7a0bcfe
Bump animal-sniffer-maven-plugin from 1.18 to 1.19 ( #2084 )
...
Bumps [animal-sniffer-maven-plugin](https://github.com/mojohaus/animal-sniffer ) from 1.18 to 1.19.
- [Release notes](https://github.com/mojohaus/animal-sniffer/releases )
- [Commits](https://github.com/mojohaus/animal-sniffer/compare/animal-sniffer-parent-1.18...animal-sniffer-parent-1.19 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2020-09-16 08:02:01 -04:00
ea5fba6dfb
Remove maven site plugin
2020-09-15 05:40:19 -04:00
5b6ee4e475
Dependency version bump ( #2074 )
...
* Dependency version bump
* More dependency work
* One more fix
2020-09-14 08:42:28 -04:00
f3d5b69da0
Bump flyway-core from 6.4.1 to 6.5.4 ( #2039 )
...
Bumps [flyway-core](https://github.com/flyway/flyway ) from 6.4.1 to 6.5.4.
- [Release notes](https://github.com/flyway/flyway/releases )
- [Commits](https://github.com/flyway/flyway/compare/flyway-6.4.1...flyway-6.5.4 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2020-08-13 05:47:43 -04:00
92718c7ef2
Version bump to 5.2.0-SNAPSHOT
2020-08-12 10:23:46 -04:00
5fb7bd5156
Version bump to 5.1.0
2020-08-11 17:43:24 -04:00
f0ed640e24
Upgrade core library dependency version
2020-08-10 09:05:04 -04:00
c13e17b4e6
Add changelog and bump Jetty
2020-07-17 11:50:45 -04:00
dbe171d658
Bump jetty_version from 9.4.24.v20191120 to 9.4.29.v20200521 ( #1890 )
...
Bumps `jetty_version` from 9.4.24.v20191120 to 9.4.29.v20200521.
Updates `jetty-http` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `jetty-servlets` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `jetty-io` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `jetty-continuation` from 9.4.24.v20191120 to 9.4.29.v20200521
Updates `jetty-security` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `jetty-servlet` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `jetty-server` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `jetty-util` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `jetty-webapp` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `jetty-xml` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Updates `websocket-api` from 9.4.24.v20191120 to 9.4.29.v20200521
Updates `websocket-client` from 9.4.24.v20191120 to 9.4.29.v20200521
Updates `websocket-server` from 9.4.24.v20191120 to 9.4.29.v20200521
Updates `jetty-maven-plugin` from 9.4.24.v20191120 to 9.4.29.v20200521
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.24.v20191120...jetty-9.4.29.v20200521 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2020-07-17 11:47:06 -04:00
baba4cc240
Avoid version conflicts on current writes ( #1971 )
...
* Add auto retry of transactions
* Experiment in Maven build
* Transaction autoretry
* Work on transaction retries
* Work on transaction retry
* Work on transaction retry
* Fix tests
* Avoid version conflicts
* Add changelog
* Resolve LGTM issue
* FIx transaction scope error
* Test fixes
* Test fix
* Test fixes
* Test fix
* Test fixes
2020-07-13 08:51:13 -04:00
11ad41d472
Credit for #1893
2020-07-06 05:52:40 -04:00
6fb6675b1e
Resolve validation errors to ValueSet with UCUM ( #1948 )
...
* Add tests for validation errors
* Work on validation errors
* Bump core version
* Fix validation errors
* Test fixes
* Add changelog
* Test fix
* Test fix
* Test fix
2020-07-05 19:59:21 -04:00
f356c7c385
Migrate to JUnit5 ( #1952 )
...
* Work on junit
* Work on junit 5
* Work on junit 5
* Bump errorprone vcersion
* Work on tests
* Junit 5 tweaks
* Fixes
* Work on tests
* Work on junit5
* Work on tests
* Test fixes
* Work on junit5
* Test work
* Get junit5 working
* Test fix
* Work on tests
* WOrk on tests
* Work on tests
* fixes
* Compile fix
* One more tweak
* Compile fix
* Add changelog
* Fix compile error
* Compile fix
2020-07-04 18:28:16 -04:00
59659b2802
Move order of modules
2020-06-24 10:11:30 -07:00
bb7a773f41
Merge branch 'master' into spring-batch-integration
2020-06-23 16:02:41 -07:00
67d363f9e1
Add setting to allow validation of reference targets ( #1932 )
...
* Add setting to allow validation of reference targets
* Add changelog
* Add changelog
* License headers
* Plugin version bump
* Experiment with Maven build
2020-06-23 11:35:10 -04:00
a9c704c06e
Merge branch 'master' into spring-batch-integration
2020-06-10 12:24:19 -07:00
b8da4f0140
Add package support ( #1911 )
...
* Begin rework of package management
* Work on NPM
* Work on package management
* Work on NPM
* NPM rework
* Work on NPM
* NPM package rework
* Updates
* Updates
* Add license
* Work on package server
* Work on package importing
* Work on package management
* Package rework
* Work on packages
* Work on package manager
* Work on pkgs
* NPM work
* NPM rework
* Work on package cache
* Work on NPM
* Work on NPM
* Package fixes
* Add tests
* Tweaks
* Test fixes
* Add changelog
* Avoid snapshot dep
2020-06-10 05:30:20 -04:00
0d3ad622b5
Correct Validation Performance Regression ( #1895 )
...
* Validation performance regression
* Optimize validation
* More cleanup
* Add changelog
* Test fixes
* Build fixes
2020-06-10 05:26:21 -04:00
278a1070ae
:Merge branch 'master' into spring-batch-integration
2020-06-08 17:16:11 -07:00
f48214deda
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-05-29 23:54:11 -04:00
93a1229789
Removing redundant maven-enforcer-plugin execution.
2020-05-27 12:57:11 -04:00
ed1e103751
Duplicate maven-enforcer-plugin removed, executions consolidated.
2020-05-27 12:39:17 -04:00
35b1533db1
Add new project for spring batch
2020-05-25 22:32:00 -07:00
ee87a2e2d0
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-05-25 11:37:34 -04:00
6a4f5b9b3a
Credit for #1826
2020-05-24 09:32:44 -04:00
c97ef7adfc
A bit more contributors cleanup
2020-05-23 19:45:00 -04:00
3bf0628436
Updatyes to devs list
2020-05-23 19:17:33 -04:00
d24f075cdb
Update some orgs
2020-05-23 17:22:59 -04:00
b60404dbb8
Credit for #1849
2020-05-23 17:18:37 -04:00
9192d41448
Credit for #1637
2020-05-23 17:16:19 -04:00
4d378ee0ed
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-cli/hapi-fhir-cli-jpaserver/src/main/java/ca/uhn/fhir/jpa/demo/CommonConfig.java
# hapi-fhir-jpaserver-base/pom.xml
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/ISearchParamExtractor.java
2020-05-22 17:04:01 -04:00
d1b963321a
MVP EMPI implementation ( #1857 )
...
EMPI Initial Implementation (still plenty of known gaps)
2020-05-22 15:03:20 -04:00
e22549e0c4
Bump MySQL JDBC driver version
2020-05-21 21:21:13 -04:00
8ff7d5407a
Bump core version
2020-05-21 19:22:28 -04:00
2360ed4abe
fix build ( #1861 )
2020-05-21 19:22:08 -04:00
5b2181a563
Implement FHIR Patch ( #1850 )
...
* Start working on FHIRPatch
* More work on fhirpatch
* Work on FHIR Patch
* Add patch
* Test fixes
* Test fixes
* Get tests fixed
* Chnage to trigger a build
* Compile fix
* Dependency version fixes
* Test fix
* COmpile fix
* Try to fix build
* Test fix attempt
* Another build attempt
* Another build tweak
* Cleanup
2020-05-20 19:43:55 -04:00
cc92bd7b07
Revert "Start working on FHIRPatch"
...
This reverts commit b3f6e7d521
2020-05-17 11:56:50 -04:00
b3f6e7d521
Start working on FHIRPatch
2020-05-17 11:44:06 -04:00
52c8e3551c
Version bump to 5.1.0-SNAPSHOT
2020-05-15 14:43:32 -04:00
fe0e07a313
Bump to 5.0.1
2020-05-15 05:47:01 -04:00
529e1e1f5e
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-05-14 12:09:24 -04:00
1d13e29ac0
Version bump to 5.1.0-SNAPSHOT
2020-05-12 20:04:20 -04:00
d631ecff4a
Prepare for 5.0.0
2020-05-12 11:49:18 -04:00
c7da4b0914
Build Cleanup
2020-05-11 13:25:58 -04:00
0c13a65871
Bump to latest Core version ( #1841 )
...
* Start working on bumping core
* Work on tests
* Work on tests
* Bump core definitions
* Bump R5 defs
* Tweak changelog
* Test fix
2020-05-11 12:37:16 -04:00
386f395e4b
Version bump 2 dependencies
2020-05-10 19:10:18 -04:00
4cced40b54
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-05-05 17:19:32 -04:00
ceae417d35
Credit for #1710
2020-05-04 05:42:32 -04:00
586089fc69
Credit for #1749
2020-05-01 07:38:31 -04:00
a786756169
Credit for #1812
2020-05-01 07:27:12 -04:00
439a901e30
Credit for #1734
2020-05-01 05:56:47 -04:00
3d5a8bb3f8
Add UCUM support ( #1824 )
...
* Add UCUM support
* Add changelog
* Some cleanup
* Test fix
* Add flywayDB callback
* Add hooks to schema migrator
2020-04-30 15:22:41 -04:00
885a18e0d8
Credit for #1788
2020-04-29 09:12:36 -04:00
dd749791db
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-04-24 16:55:45 -04:00
6226381595
Merge branch 'master' into ja_20200206_multitenancy
2020-04-21 20:54:56 -04:00
11fade2c2e
Bump boot version
2020-04-21 15:55:35 -04:00
4b93a0d724
Credit for #1806
2020-04-21 15:49:43 -04:00
1f848dde82
Credit for #1791
2020-04-21 15:30:42 -04:00
faddeeb779
Add changelog
2020-04-20 11:15:35 -04:00
95b77af570
Merge branch 'master' into ja_20200206_multitenancy
2020-04-20 11:07:10 -04:00
bcac2b061c
Credit for #1799
2020-04-18 11:14:15 -04:00
48057b9d8e
Merge branch 'master' into ja_20200206_multitenancy
2020-04-17 17:59:48 -04:00
540375a7eb
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-04-17 17:39:27 -04:00
e0b419354f
Bump up hamcrest version and force the use of the latest version
2020-04-17 13:59:22 -04:00
a1b3a97acf
Work on docs
2020-04-17 09:28:44 -04:00
925bbbbcdc
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-cli/hapi-fhir-cli-api/src/main/java/ca/uhn/fhir/cli/RunServerCommand.java
# hapi-fhir-cli/hapi-fhir-cli-jpaserver/src/main/java/ca/uhn/fhir/jpa/demo/CommonConfig.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/dstu3/BaseDstu3Config.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/r4/BaseR4Config.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/r5/BaseR5Config.java
# pom.xml
2020-04-13 18:35:15 -04:00
982b54df57
Work on multitenancy
2020-04-13 11:50:49 -04:00
c26a5553e9
Multitenancy work
2020-04-12 20:47:32 -04:00
e55ccf88fc
Work on multitenancy
2020-04-10 20:01:59 -04:00
e0fcbe1df2
Merge branch 'master' into ja_20200206_multitenancy
2020-04-09 11:52:27 -04:00
6baf1995c9
Work on subscription cleanup
2020-04-02 20:30:19 -04:00
f891634341
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-03-31 13:30:28 -04:00
62d867902f
Work on multitenancy
2020-03-29 18:16:04 -04:00
ec6fe70acb
Merge branch 'master' into ja_20200206_multitenancy
2020-03-27 05:50:08 -04:00
4e4c8dbd9a
Initial commit of changes to support $lastn operation.
2020-03-25 18:02:13 -04:00
c6d23a8bc6
Add chain on _type parameter ( #1772 )
...
* Add chain on _type parameter
* Add changelog
* Test fix
* Address review comments
* Fix azure yaml
* Correct HTTPs in pom
* One more pom tweak
* Test fix
* Try azure again
2020-03-24 09:44:57 -04:00
bb4cbb6af5
One more pom tweak
2020-03-24 06:10:29 -04:00
22e0c7a596
Correct HTTPs in pom
2020-03-24 06:09:03 -04:00
fa29f3e8ab
Credit for #1770
2020-03-23 19:12:05 -04:00
14316147c5
Resolve some docs issues
2020-03-23 10:34:12 -04:00
22413911bf
Validation api changes ( #1719 )
...
* Validation enhancements
* Work on validation api reworking
* Keep working on validation API
* Keep working on new term API
* Work on validation api
* Ongoing work on validation
* Work on integrating validation
* Work on validation API
* Add to validation API
* Work on validation
* Work on API
* Work on validation
* Work on validation API
* Work on validation API
* Work on validation api
* Work on validation API
* Work on validation api
* Validation API changes
* Work on API
* More work on validationo API
* Work on validation API
* FIxes
* WOrk on validation api
* Work on validation API
* Tests passing!
* More cleanup
* More validation API changes
* Fix intermittent test failure
* Package reorg
* Validation API work
* Work on doocumentation
* Work on API
* More work on new validation API
* Fix errorprone-reported error
* Test fixes
* Documentation updates
* Documentation tweaks
* Work on API
* Bean name adjustments
* Build fixes
* Some test fixes
2020-03-17 13:28:59 -04:00
80139f4800
Update pom.xml ( #1709 )
...
A run on master using https://jeremylong.github.io/DependencyCheck/dependency-check-maven/index.html shows quartz as having a critical security issue in version 2.3.1
2020-03-17 12:47:12 -04:00
4a160a2df3
Merge branch 'master' into ja_20200206_multitenancy
2020-03-03 09:25:19 -05:00
ed7b9fc6b6
Initial attempt at integrating elastic APM for search performance
2020-02-28 16:09:16 -05:00
60f16dd91d
Update to 4.3.x core JAR ( #1715 )
...
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Start working on converter
* Account for compile errors
* Test fix
* Work no validator
* Work on getting core working
* Add some test coverage
* Many test fixes
Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
2020-02-17 14:28:29 -05:00
ddc7b601ee
Version bump to 4.3.0-SNAPSHOT
2020-02-16 19:23:22 -05:00
4fd80cfca7
Bump to 4.2.0
2020-02-16 19:00:15 -05:00
ebf395bee9
Merge branch 'master' into ja_20200206_multitenancy
2020-02-09 08:40:29 -05:00
f7ec41ffc5
Work on multitenancy
2020-02-09 08:40:15 -05:00
c5c1e3196b
Resolve FIXMEs ( #1705 )
...
* Resolve FIXMEs
* Test fixes
* Test fixes
* Clean up unused code
* Add some test coverage
* Test fix
* Test fix
* Avoid intermittent
2020-02-09 08:39:46 -05:00
b2d2346228
Work on multitenancy
2020-02-07 15:18:06 -05:00
97289b3a1f
Credit for #1692
2020-02-04 17:38:42 -05:00
3c965183e7
Checkstyle plugin version bump
2020-02-03 19:45:32 -05:00
b5adef43ac
Bump checkstyle from 8.18 to 8.29
...
Bumps [checkstyle](https://github.com/checkstyle/checkstyle ) from 8.18 to 8.29.
- [Release notes](https://github.com/checkstyle/checkstyle/releases )
- [Commits](https://github.com/checkstyle/checkstyle/compare/checkstyle-8.18...checkstyle-8.29 )
Signed-off-by: dependabot[bot] <support@github.com>
2020-02-02 20:36:15 -05:00
beab5b3a9c
Credit for #1689
2020-01-29 05:56:36 -05:00
39ff698dd2
Parser performance tweaks ( #1660 )
...
* Parser improvements
* Parser tweaks
* Fix test
* Add changelog
* Bump spring mvc version
* Bump spring version
* Test fix?
2020-01-22 14:44:12 -05:00
1390ea3c06
Update FHIR R5 structures to 4.2.0 version ( #1665 )
...
* Work on upgrading core
* Work on R5 updates
* Work on core updates
* Test fix
* Update model version properties file for R5
* Bump core version
* Test fixes
* Add 4.2.0-SNAPSHOT version to versions page in docs
2020-01-14 10:27:01 +08:00
f963906545
Bump postgres version
2019-12-27 09:57:40 -05:00
5cfc75eac2
Test fixes
2019-12-25 13:05:33 -05:00
0a21ab6941
Use datasource for migrator
2019-12-18 14:23:46 -05:00
c0c85d7c8c
Logging fixes
2019-12-16 10:30:04 -05:00
f2221bcc69
Restore errorprone to the build
2019-12-15 19:11:27 -05:00
e1f2d044ed
Add errorprone back into build
2019-12-15 09:42:51 -05:00
ba8f50f0c8
Docs updates
2019-12-14 18:19:09 -05:00
0b30033b0a
upgrade flyway to latest version
...
automatically repair failed migrations
2019-12-09 11:19:18 -05:00
fadaad9e96
Bump jetty_version from 9.4.23.v20191118 to 9.4.24.v20191120
...
Bumps `jetty_version` from 9.4.23.v20191118 to 9.4.24.v20191120.
Updates `jetty-http` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-servlets` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-io` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-continuation` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-security` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-servlet` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-server` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-util` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-webapp` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `jetty-xml` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Updates `websocket-api` from 9.4.23.v20191118 to 9.4.24.v20191120
Updates `websocket-client` from 9.4.23.v20191118 to 9.4.24.v20191120
Updates `websocket-server` from 9.4.23.v20191118 to 9.4.24.v20191120
Updates `jetty-maven-plugin` from 9.4.23.v20191118 to 9.4.24.v20191120
- [Release notes](https://github.com/eclipse/jetty.project/releases )
- [Commits](https://github.com/eclipse/jetty.project/compare/jetty-9.4.23.v20191118...jetty-9.4.24.v20191120 )
Signed-off-by: dependabot[bot] <support@github.com>
2019-12-02 23:16:19 +00:00
2115721940
Corrected typos and fixed grammatical mistakes in documentation
2019-12-01 03:35:35 +05:00
a32c62f83b
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
...
# Conflicts:
# src/changes/changes.xml
2019-11-24 16:42:23 -05:00
dc9650e32c
Bump greenmail dep
2019-11-23 20:52:21 +01:00
51b608188b
Some CI surefire improvements ( #1602 )
...
* Some CI surefire improvements
* Build tweak
* More tweak
* Update azure-pipelines.yml for Azure Pipelines
* Update azure-pipelines.yml for Azure Pipelines
* One more CI attempt
* Update azure-pipelines.yml for Azure Pipelines
* Tweak command line
* Another build test fixc
* More build cleanup
2019-11-23 19:51:02 +01:00
a2f77b23d2
Fix #1583 - Index local refs in canonical types ( #1593 )
...
* Fix #1583 - Index local refs in canonical types
* Add fix to pre-expansion
* Test fix
* Rework ID handling
* Test fixes
* Fix test
2019-11-23 16:32:37 +01:00
6543da1470
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
2019-11-15 09:28:30 -05:00
497a96ae68
Version bump for next round of development
2019-11-12 22:09:21 -05:00
f99ad981b5
Version bump to 4.1.0
2019-11-12 16:08:20 -05:00
aa0301084b
Don't succeed validation on unknown codesystem ( #1575 )
...
* Don't succeed validation on unknown codesystem
* Test fixes
* Work on error messages
* Work on code validation API
* work on tests
* Work on validation
* Test fix
* Update DSTU3 validation reources
* Upgrade structures
* Test fixes
2019-11-12 14:35:49 -05:00
7525e70bbc
added message type to channel api. needed by kafka listeners when more than one message type needs to be supported
2019-11-09 18:31:08 -05:00
37cc5a4a72
Update pom.xml
...
Bump version of awaitility (https://github.com/awaitility/awaitility/pull/138 ) due to issues on Windows
2019-11-05 05:29:06 -05:00
1c4b73b86a
pre-review cleanup
2019-11-04 08:27:34 -05:00
4c732ce977
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
2019-11-03 21:07:59 -05:00
6ff1aaae61
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
2019-11-03 13:46:51 -05:00
60628356a8
Version bump spring
2019-11-03 11:29:22 -05:00
ac51098cb3
Version bump H2
2019-11-02 23:48:14 -04:00
bb0f71f271
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
2019-11-02 21:51:47 -04:00
3b6709e1d1
Merge pull request #1566 from jamesagnew/ja_20190928_rationalize_search_param_extractor
...
Rationalize search param extractors across FHIR versions
2019-11-02 16:18:23 -04:00
bee993a0ec
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
...
# Conflicts:
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/taskdef/DropIndexTask.java
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/taskdef/DropTableTask.java
2019-11-01 13:37:00 -04:00
80bfb9af37
Issue-1077: Make CapabilityStatementProvider use the closest common superclass of provided resources when generating rest.resource.profile, instead of always using the base definition.
2019-11-01 10:20:16 -04:00
e29462bcab
Version bump some dependencies
2019-11-01 10:15:27 -04:00
9c9193b401
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
2019-10-31 09:38:30 -04:00
97d5edc0b0
Credit for #1538
2019-10-31 08:21:11 -04:00
817f9ae36e
Merge branch 'master' into ja_20190928_rationalize_search_param_extractor
2019-10-27 17:25:20 -04:00
18e8604494
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
...
# Conflicts:
# hapi-fhir-cli/hapi-fhir-cli-api/pom.xml
2019-10-27 08:29:52 -04:00
464c6c5b45
Upgrade dependencies and addess Semmle issues ( #1554 )
...
* Version bumps
* FIx build issues
* Address a few Semmle issues
* Work on tests
* Some test fixes
* Test fix
* Fix deletions
* Test fix
* Fix intermittent test failure
* One more dependency bump
* Add some test logging
* Remove bad import
* Add some tests
* Test updates
2019-10-22 17:10:58 -04:00
a375f761cb
FIx typo in pom
2019-10-22 14:17:25 -04:00
5809457335
Credit for #1526
2019-10-22 14:01:21 -04:00
c003047ca9
Split test from example
2019-10-22 13:58:52 -04:00
0af79b84d9
Use webjars instead of including JS deps ( #1551 )
...
* Use webjars instead of including JS deps
* Add changelog
2019-10-21 07:22:55 -04:00
e6ae368424
Credit for #1547
2019-10-18 07:07:02 -04:00
2725797610
Implement Terminology Delta Operations ( #1536 )
...
* Start refactoring terminology delta operations
* Work on delta operations
* Work on concept saving
* Split term services into smaller services
* Work on term delta operations
* Work on term svcs
* Work on term operations
* More work on delta uploader
* Add a test
* Wrk on term service
* Fix compile error
* Some refactoring
* Test fix
* Test fix
* Test fixes
* Test fix
* Test fixes
* Test fixes
* Work on delta
* Work on tests#
* Test fixes
* Improve resequencing logic
* Build test
* More testing
* More build testing
* More work on tests
* CHange test logging
* Fix term service PID issue
* Update src/changes/changes.xml
Co-Authored-By: Diederik Muylwyk <diederik.muylwyk@gmail.com>
* Address review comment
* Some cleanup
* Test fix
* Fix some tests
* Test fixes
2019-10-14 19:14:41 -04:00
790f655a95
flyway initial implementation (with FIXMEs)
2019-10-06 17:55:10 -04:00
55491fd1bf
Add a couple of exclusions
2019-10-03 07:21:53 -04:00
da9efaea0b
Credit for https://github.com/hapifhir/hapi-fhir-jpaserver-starter/pull/54
2019-10-01 15:22:03 -04:00
48d191cbe5
Credit for #1473
2019-10-01 05:32:54 -04:00
557a8ccc66
Add top level support for ElasticSearch ( #1514 )
...
* ElasticSearch work
* Add ElasticSearch properties builder
* Clean up POM
* Remove redundant project
* Try to troubleshoot embedded elasticsearch
* Another test attempt
* Add credentials to elasticsearch config
* Work on lastn
* Address review comments
* A couple of test fixes
2019-09-30 09:30:39 -04:00
b2c13f3018
Work on codecov integration
2019-09-25 13:25:59 -04:00
5f563057c0
Set up CI with Azure Pipelines ( #1502 )
...
* Set up CI with Azure Pipelines
[skip ci]
* Update azure-pipelines.yml for Azure Pipelines
* Skip tests for a build
* Work on pipeline
* Update azure-pipelines.yml for Azure Pipelines
* Interceptors docs
* Test fix
* Disable releases from snapshot repo
* Try disabling jitpack
* Fix dependency issue
* A couple of test fixes
* Change to trigger a build
* Force a change to trigger a build
* Force a build
* FIx test
2019-09-24 14:38:38 -04:00
936587df6e
Work on migrating docs
2019-09-22 15:52:49 -04:00
58b7e3a923
Start splitting docs into separate project
2019-09-22 08:58:17 -04:00
ad01d7598c
Credit for #1489
2019-09-19 20:41:02 -04:00
170698562a
Bump to current org.hl7.fhir.core
2019-09-19 08:11:30 -04:00
4a751cbfc5
Integrate Bulk Export ( #1487 )
...
* Start working on subscription processor
* Work on new scheduler
* Test fixes
* Scheduler refactoring
* Fix test failure
* One more test fix
* Updates to scheduler
* More scheduler work
* Tests now all passing
* Ongoing work on export
* Ongoing scheduler work
* Ongoing testing
* Work on export task
* Sync master
* Ongoing work
* Bump xml patch version
* Work on provider
* Work on bulk
* Work on export scheduler
* More test fies
* More test fixes
* Compile fix
* Reduce logging
* Improve logging
* Reuse bulk export jobs
* Export provider
* Improve logging in bulk export
* Work on bulk export service
* One more bugfix
* Ongoing work on Bulk Data
* Add changelog
2019-09-17 16:01:35 -04:00
0831feb2c3
Bump xml patch version
2019-09-11 17:33:31 -04:00
c7ec9601fd
Bump core version
2019-09-10 13:32:59 -04:00
722c7a8211
Work on GraphQL updates
2019-09-06 14:56:17 -04:00
8ce8f1e864
Credit for #1461
2019-09-01 18:41:17 -04:00
37c1ba44fe
Merge remote-tracking branch 'remotes/origin/master' into ks-awaitility-version-bump
2019-08-21 15:04:16 -04:00
9428430822
Add support for Resource.meta.source ( #1438 )
...
* Work on indexing source
* Work on tests
* Refactor query count tests
* Unit test fixes
* Add some tests
* DAO fix
* Fix compile error
* Unit test fix
* Cleanup
* Test fix
* Fix compile error
* One more test fix
2019-08-21 11:17:43 -04:00
daf45db2be
fixed a test and removed awaitility excludes
...
mvn install completed successfully
2019-08-20 09:14:21 -04:00
630bb916b4
awaitility version bump
2019-08-19 12:15:14 -04:00
a0cb7beb28
Bump core projects version
2019-08-19 08:15:04 -04:00
4490c9ca09
Correct the eq operator on the _filter parameter
2019-08-14 14:39:40 -04:00
e1b43d811f
Version bump to 4.1.0-SNAPSHOT
2019-08-14 14:06:06 -04:00
3f22456b0f
Bump version to 4.0.0
2019-08-14 11:06:26 -04:00
a1e1cf4e56
Credit for #1375
2019-08-13 05:37:40 -04:00
31e374ded8
Credit for #1220
2019-08-12 13:35:27 -04:00
301a8f8432
Merge #1146 - Filter implementation ( #1220 )
...
* Initial commit of _filter keyword implementation.
* - Completed all search parameter types for _filter.
- Implemented handling for _has, _id, _security, language, _profile, _security, and _tag.
* - Changes to support "ne" matching on resource ID for _filter
* Implemented language
* Commit/push before creation of pull request
* Ongoing merge work
* Ongoing merge work
* Merge master in
* Test fix
2019-08-12 11:59:33 -04:00
4e1bbe681a
Bump supported PGSQL driver
2019-08-08 15:12:29 -04:00
dd0cb10dbb
validate operation ignores parameter profile ( #1417 )
...
* This should be working now - need to check tests
* Add a changelog and some docs
* One more test fix
* Tests should be passing
* Fix compile
* Test fixes
* Ignore outdated DSTU2 validation test
2019-08-07 15:31:59 -04:00
d9247a2021
Account for GPG 1.2
2019-08-07 10:43:30 -04:00
60eab3ad70
Add support for R5 resources ( #1416 )
...
* Work so far on R5 support
* Add support for R5
* Docs changes
2019-08-06 17:30:31 -04:00
46c8c61932
Restore build - May need to roll back the RDF changes
2019-08-01 10:14:56 -04:00
39c2a95ce7
Credit for #1321
2019-08-01 09:29:43 -04:00
0f4738c1b5
Merge branch 'master' into rdf_parser
2019-08-01 09:25:40 -04:00
e20443010d
Credit for #1404
2019-08-01 06:38:37 -04:00
7831e8a0ed
Add support for $snapshot generation and validation based on snapshots
2019-07-14 16:15:56 -04:00
120b93f204
Use HL7 FHIR Core Structures ( #1382 )
...
* Ongoing work on core structures suport
* Ongoing work on this merge
* Ongoing work to clean up structures
* Credit for #1179
* Address compile issues
* Latest changes
* Work on parallel execution
* Work on getting tests passing
* Add H2 to migrator
* Test fix
2019-07-14 10:16:40 -04:00
75f0dc993c
Try to prevent an intermittent test fix
2019-07-11 21:39:41 -04:00
1db019b6df
Test fix and try to get Travis building again
2019-07-11 20:20:27 -04:00
4bd60a8447
Roll back one dependency
2019-07-07 11:02:08 -04:00
d23046b8ea
Dependency version bumps
2019-07-07 10:14:08 -04:00
190f0a0d5a
Bump several dependency versions to latest versions
2019-07-07 09:58:31 -04:00
cdb0006a5b
Correct version of license plugin
2019-07-05 09:38:31 -04:00
76c40db33a
Bump license plugin version
2019-07-05 09:03:50 -04:00
5e44161c9d
Add explicit JAR plugin version
2019-07-03 14:08:01 -04:00
d25e882d9a
Issue-1351: Add a BOM POM for HAPI FHIR
2019-06-28 15:18:06 -04:00
10d969c514
Add Consent Service ( #1359 )
...
* Initial consent svc
* Ongoing consent svc work
* Add docs
* Ongoing consent service work
* Work on consent service
* More work on consent svc
* License header updates
* Ongoing consent svc work
* Some test fixes
* Some test fixes
* More work on consent svc
* Tests working
* Test fix
* Propagate RequestDetails to everything in JPA server
* More interceptor tweaks
* Fix compile error
* One more tweak to captured SQL
* Ongoing interceptor tweaks
* Ongoing interceptor tweaks
* More interceptor tweaks
* Interceptor tweaks
* Tweaks to tests
* Fix tests
* Test fix
* Raise warnings when encoding extensions with missing values
* Consent service work
* More interceptor tweaks
* Consent interceptor tweaks
* Add logging to test
2019-06-27 16:35:29 -04:00
c14f5c1520
Credit for #1361
2019-06-25 18:31:25 -04:00
8b4ceb8d5f
changed json patch framework to slightly more maintained fork
2019-06-17 16:45:17 -04:00
b56f59542a
Move JettyUtil to new module
2019-06-14 18:34:45 -04:00
3b35e6add4
Test Classes
2019-06-14 05:24:11 -05:00
2bf680509b
DeleteConflict hook, SearchableHashMapResourceProvider, and in-memory searching ( #1341 )
...
* Make IBundle list interface more flexible
* Make matchResourceLinks visible
* Make matchResourceLinks visible
* Pull in-memory matching functionality out of subscription module into dedicated classes in searchparam module
* Added more accessors to version independent resource classes
* improved forcedid matching (needs to be verified by James)
filter out nulls from HashMapProvider.searchAll() (hopefully no tests depend on this)
* add AnyComposition
* cleanup of Any classes
* create searchparam config so people can use that module without using subscriptions
* create searchparam config so people can use that module without using subscriptions
* fix broken test
* added derivedFrom
* renamed daoRegistry.getResourceDaoIfExists to getResourceDaoOrNull
also added method to add a new dao to the registry and retrieve registered types
* TokenParam.equals
* add error check to searchable hashmap resource provider
* added support for R4
* add successor to measure
* delete conflict hook
start with failing test
* test passes.
hook is called.
* added delete conflict hook
all delete conflict tests pass
* added javadoc
* Performance test
* test bad interceptor case
* typo
* rename criteria matcher
* added support for multiple topics
* fix method name
* add effective period
* Temporarily excluding StressTest from build to try to get Travis under time limit
* change log
* review feedback
* review feedback
* review feedback
2019-06-13 13:59:51 -04:00
dd203ae28f
Credit for #1337
2019-06-10 11:14:52 -04:00
a952663dc3
Disable OSGI mdule for now#
2019-06-09 23:51:41 -04:00
c2aec5c1a9
Respect the _total parameter for all JPA searches
2019-06-09 05:44:49 -04:00
9500f6e6fe
Roll back derby version for now
2019-06-07 16:27:19 -04:00
517b68882c
Fix derby dependencies for tests
2019-06-07 11:11:25 -04:00
cab44e9626
One more version bump for dependencies
2019-06-07 09:17:07 -04:00
a0fa752eac
A number of dependency updates
2019-06-07 09:06:30 -04:00
50a8c66bf5
Version bump to 4.0.0-SNAPSHOT
2019-05-30 17:13:03 -04:00
73aa53be8f
Release 3.8.0
2019-05-30 16:50:04 -04:00
13f3c02b2b
Credit for #1244
2019-05-29 21:44:30 -04:00
83616bb53d
Upgrade to newer checkstyle
2019-05-29 21:25:20 -04:00
96c70f6093
Credit for #1213
2019-05-29 21:22:54 -04:00
43a8499bf6
Bump Karaf version
2019-05-29 09:31:00 +02:00
f17fc4ce82
Credit for #1305
2019-05-23 09:09:44 -04:00
5f858066da
Bump jackson version
2019-05-23 08:49:05 -04:00
aa88816d9a
Credit for #1311
2019-05-22 17:13:33 -04:00
f5a7333c4c
Bump greenmail version
2019-05-11 15:47:06 -04:00
37b9e1a42c
Improve validation of enableWhen questionnaires
2019-04-29 14:43:42 -04:00
685adf7754
Revert Jetty upgrade, and improve patch error messages
2019-04-26 11:23:22 -04:00
da962b8c10
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-04-24 14:33:28 -04:00
738c2c1797
Interceptor framework refactoring ( #1287 )
...
Interceptor framework overhaul
2019-04-24 14:32:30 -04:00
f2e382a132
Swap JSON Patch provider
2019-04-24 14:10:21 -04:00
2ed9b39ff4
Remove useless test case
2019-04-15 16:55:54 -04:00
c8f2e4bbc9
Return HTTP 400 for missing body on POST and PUT
2019-04-14 12:32:09 -04:00
835b89f449
Build fixes
2019-04-01 18:55:55 -04:00
e6a6c22783
Bump a few project dependencies
2019-03-31 13:57:02 -04:00
08c7afb804
Reduce logging in JPA server
2019-03-14 17:42:13 -04:00
f934f76c96
Several JPA search fixes ( #1231 )
...
* Search fixes
* Add some tests
* CHangelog
* Some cleanup of the query tracker
* FIx XML issue in changelog
* Test fixes
* SOme test fixes
* Address review comments
* Fix test breakage
2019-03-11 15:49:34 -04:00
0f8c8d18e2
Bump version to 3.8.0-SNAPSHOT
2019-02-06 20:02:28 -05:00
207015c3af
Version bump to 3.7.0
2019-02-05 21:36:38 -05:00
86a12bcf2a
Credit for #1114
2019-02-02 11:33:08 -05:00
ea84f2c377
Version bump hibernate search
2019-02-02 11:26:19 -05:00
9280cde491
Subscription only registers active ( #1189 )
...
* Fixed a bug in standalone subscription subscriber: It was adding REQUESTED subscriptions to the active subscription registry. (Only ACTIVE subscriptions should be added.)
2019-02-01 10:14:46 -05:00
b46b60798a
Credit for #1130
2019-01-31 05:26:14 -05:00
db42609ca7
Credit for #1135
2019-01-31 05:20:43 -05:00
5d540d9208
Query optimization in JPA
2019-01-27 20:03:48 -05:00
afaa1b065f
Hivernate back to 5.4.0
2019-01-23 09:38:49 -05:00
eee4c75300
Version bump hibernate
2019-01-23 05:57:20 -05:00
4367e340ae
Log the version number and commit on startup
2019-01-17 16:05:54 -05:00
38bade0429
Credit for #1118
2019-01-13 17:22:29 -06:00
3c260e5ef2
Ignore unfinished test
2019-01-10 07:36:37 -07:00
ee52d6fb31
Add SearchNarrowingInterceptor
2019-01-09 20:20:46 -06:00
8beccab9ab
Merge branch 'master' into test-openjdk-11
2019-01-09 10:48:57 -05:00
b3c9b32db4
Credit for #1065 and forward-port fix to R4 provider
2019-01-09 07:19:55 -05:00
1bfa29bbcc
Site updates
2018-12-28 11:42:21 -05:00
c462b5ba3e
Prep new site version
2018-12-28 09:16:48 -05:00
49e418edf0
Adjust migrator to handle updated Hibernate version
2018-12-23 15:11:44 -05:00
4599a10180
Merge branch 'master' into test-openjdk-11
2018-12-23 14:19:59 -05:00
9d3904ef3e
Fix #1142 - Upgrade Spring Boot to latest version
2018-12-23 13:10:03 -05:00
a0cb7edd08
Version bump a few dependencies
2018-12-22 20:13:03 -05:00
226e31b0d9
Reenable karaf
2018-12-22 15:07:26 -05:00
cda84c4b3a
Karaf related fixes for jdk11
2018-12-22 13:25:09 -05:00
ea80d03a74
Credit for #1051
2018-12-21 05:42:39 -05:00
11b8304cb4
Fix case sensitivity issue
2018-12-13 08:31:35 -05:00
3109a269b3
Attempting to get ErrorProne working on JDK11
2018-12-08 18:22:17 -05:00
9a97d21660
Bump compiler plugin
2018-12-08 18:06:39 -05:00
3a3b81a6a8
Preparing things for OpenJDK 11
2018-12-08 17:52:48 -05:00
6baee4dc3f
Standalone subscription ( #1125 )
2018-11-30 17:19:16 -05:00
14c0a52831
Fix xml typo
2018-11-16 09:21:53 +01:00
e75d2e1f10
Credit for #1117
2018-11-15 13:37:32 +01:00
84acafe3af
Streamline expunge operation
2018-11-15 11:37:16 +01:00
75210d614b
Bump to 3.7.0-SNAPSHOT
2018-11-12 22:37:52 -05:00
63af04a7b4
Prepare for 3.6.0 release
2018-11-12 05:40:55 -05:00
e5b04710ea
Version bump a few dependencies
2018-11-11 17:06:40 -05:00
7e2e53a354
Credit for #1071
2018-11-08 13:33:25 -05:00
9fee827398
Credit for #1103
2018-11-08 13:24:24 -05:00
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