314df43091
BaseValidationSupportWrapper.expandValueSet(...) and ValidationSupportChain.expandValueSet(...) were incorrectly replacing expansion options (i.e. offset and count) with null.
2020-06-22 16:52:52 -04:00
46c00f4efb
Update for Loinc 2.68 ( #1917 )
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* Work on loinc updates
* Work on loinc upload
* Clean up CLI config
* Add changelog
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/TermLoaderSvcImpl.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/TermLoaderSvcImpl.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/TerminologyUploaderProviderR4Test.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/loinc/LoincUploadPropertiesEnum.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/term/TerminologyLoaderSvcLoincTest.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Clean up imports
* LOINC fixes
* Loinc loader fixes
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
2020-06-18 16:55:11 -04:00
4119cbb0c4
Terser should create correct Enumeration on create
2020-06-17 18:32:27 -04:00
abf0a0053d
Merge pull request #1928 from jamesagnew/im_20200615_mysql_migration_syntax
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Im 20200615 mysql migration syntax
2020-06-17 14:21:17 -04:00
b6540064ea
Improve TX scoping for validation ( #1925 )
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* Improve TX scoping for validation
* Test fix
* Test fix
* Some cleanup
* Test fixes
* Test fix
2020-06-17 14:04:12 -04:00
5b120ee71e
Removed unused code and import statement.
2020-06-17 11:57:37 -04:00
5d22af45bf
Added tests for cases where a renamed column is used in a Foreign Key constraint.
2020-06-17 11:56:20 -04:00
eb990e9a68
Enhance added JUnit test.
2020-06-17 09:05:53 -04:00
cc7ed1b036
Cleanup JUnit test.
2020-06-16 17:21:17 -04:00
2d857f484c
Fix broken JUnit.
2020-06-16 17:13:00 -04:00
0bd8084b5e
Additional fixes to migration tasks for MySQL.
2020-06-16 16:05:10 -04:00
0d4e12fe58
Undo accidentally committed file with a weird name
2020-06-15 09:17:52 -04:00
34c68e15af
Add license headers
2020-06-14 19:10:36 -04:00
d164e2d450
Empi 28 matchers ( #1918 )
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* adding matchers
* reorganize resource matching api
* added precision sensitive date matcher
* stricter rules validation
* validate thresholds
* validate paths. with FIXMES
* validate searchparams
* fix merge compile error
* add soundex, validate no duplicate names
* add normalize substring
* add exact field to matcher
* EXACT -> STRING, exact=true
* cleanup test method
* match test passes with fixmes
* fixed vector matching
* fixed vector matching
* updating documentation and fixing tests
* updated rules documentation with latest matchers
* updated rules documentation with latest matchers
* created eid page
* eid documentation
* pre-review cleanup
* clean up beans
* disentangling beans
* checkstyle
* noop to trigger CI
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_details.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_details.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_details.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_details.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_rules.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* review feedback
* review feedback
* review feedback
* review feedback
* review feedback
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2020-06-14 17:15:56 -04:00
db4b749436
License updates
2020-06-14 15:44:33 -04:00
ac0d8c0fe1
Test fixes
2020-06-14 15:32:50 -04:00
622659cbb3
Add type parameter to resource reindexing operation ( #1921 )
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* Add type parameter to resource reindexing operation
* Add changelog
* CLean up reindexing
2020-06-12 16:51:18 -04:00
4f45c2c25d
Merge pull request #1920 from jamesagnew/im_20200611_mysql_rename
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Enable rename table column migration task for MySQL.
2020-06-12 13:04:54 -04:00
1ed65f2e03
Enable rename table column migration task for MySQL.
2020-06-12 09:01:46 -04:00
756602183b
Add changelog for https://github.com/hapifhir/org.hl7.fhir.core/pull/237
2020-06-11 14:03:20 -04:00
d521dc61cc
Package fix
2020-06-10 11:59:37 -04:00
7d6f8fe612
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2020-06-10 09:57:24 -04:00
05df4f0827
Migration task updates
2020-06-10 09:56:49 -04:00
0c100f1aca
Test fixes
2020-06-10 08:09:10 -04:00
b8da4f0140
Add package support ( #1911 )
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* Begin rework of package management
* Work on NPM
* Work on package management
* Work on NPM
* NPM rework
* Work on NPM
* NPM package rework
* Updates
* Updates
* Add license
* Work on package server
* Work on package importing
* Work on package management
* Package rework
* Work on packages
* Work on package manager
* Work on pkgs
* NPM work
* NPM rework
* Work on package cache
* Work on NPM
* Work on NPM
* Package fixes
* Add tests
* Tweaks
* Test fixes
* Add changelog
* Avoid snapshot dep
2020-06-10 05:30:20 -04:00
0d3ad622b5
Correct Validation Performance Regression ( #1895 )
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* Validation performance regression
* Optimize validation
* More cleanup
* Add changelog
* Test fixes
* Build fixes
2020-06-10 05:26:21 -04:00
926afd01f2
Merge pull request #1910 from jamesagnew/im_20200605_db_blob_mssql
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Im 20200605 db blob mssql
2020-06-09 13:48:53 -04:00
0540c9e205
Merge remote-tracking branch 'remotes/origin/master' into im_20200605_db_blob_mssql
2020-06-09 12:43:05 -04:00
3b14407ef7
Merge pull request #1905 from jamesagnew/im_2020601_lastn_code_text_filter
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Im 2020601 lastn code text filter
2020-06-09 12:38:28 -04:00
97e6d967e9
Improve updated JUnit test.
2020-06-09 11:52:51 -04:00
1ec6a7edb6
Merge remote-tracking branch 'remotes/origin/master' into im_2020601_lastn_code_text_filter
2020-06-09 11:45:04 -04:00
4bf649c09c
Merge remote-tracking branch 'remotes/origin/master' into im_20200605_db_blob_mssql
2020-06-09 11:41:05 -04:00
d6a5cee6ba
fix test ( #1909 )
2020-06-09 11:38:39 -04:00
64aa0feb5d
Fix for issue of persisting blob data types to MS SQL databases.
2020-06-09 11:06:01 -04:00
122bd97344
Changes recommended during code review.
2020-06-09 09:59:03 -04:00
82b4864d79
Empi 57 filter out inactive person ( #1903 )
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* begin with failing test
* test passes
* pre-review cleanup
* little fix
* fix intermittent
2020-06-09 09:52:40 -04:00
3c600e06d4
Merge remote-tracking branch 'remotes/origin/master' into im_2020601_lastn_code_text_filter
2020-06-08 18:08:55 -04:00
c86e46b196
Add documentation and remove requirement for max parameter (defaulted to 1 now).
2020-06-08 18:08:02 -04:00
30dd858f17
Add close method for Elasticsearch service. Fix the partial code match.
2020-06-08 15:07:02 -04:00
954730d485
Merge pull request #1904 from jamesagnew/dm-fix-typo
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Fixed a typo in ParametersUtil.
2020-06-08 13:55:28 -04:00
eda806babd
Fix typo.
2020-06-08 13:48:44 -04:00
4982e67a0f
Merge remote-tracking branch 'remotes/origin/master' into im_2020601_lastn_code_text_filter
2020-06-08 09:26:55 -04:00
56cbc5149b
Add support for partial code description matching.
2020-06-08 09:24:09 -04:00
dd84846b94
Empi 56 link merged person ( #1902 )
2020-06-05 15:50:50 -04:00
558f419955
Empi 54 not duplicate ( #1900 )
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add operation to unduplicate persons
2020-06-05 12:21:09 -04:00
5483c99e00
License header updates
2020-06-05 05:47:20 -04:00
21330a0a22
Transaction create performance improvement ( #1899 )
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* Work on perf issue
* Improve write performance for large bundles with tags
* Add changelog
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_1_0/1899-improve-write-xact-perf-with-tags.yaml
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/MemoryCacheService.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/MemoryCacheService.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Test fix
* Test fixes
* Test fixes
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
2020-06-05 05:26:06 -04:00
549993886d
Fix merge conflicts.
2020-06-04 17:57:38 -04:00
78b7f091ec
Merge remote-tracking branch 'remotes/origin/master' into im_2020601_lastn_code_text_filter
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# Conflicts:
# hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/search/lastn/LastNElasticsearchSvcMultipleObservationsIT.java
2020-06-04 16:55:18 -04:00
eb7b8e816b
Empi 58 no match create person ( #1898 )
2020-06-04 16:07:50 -04:00
Diederik Muylwyk
James Agnew
IanMMarshall
ianmarshall
Ken Stevens