Commit Graph

653 Commits

Author SHA1 Message Date
jamesagnew 39c2a95ce7 Credit for #1321 2019-08-01 09:29:43 -04:00
James Agnew 0f4738c1b5
Merge branch 'master' into rdf_parser 2019-08-01 09:25:40 -04:00
jamesagnew e20443010d Credit for #1404 2019-08-01 06:38:37 -04:00
James Agnew 7831e8a0ed Add support for $snapshot generation and validation based on snapshots 2019-07-14 16:15:56 -04:00
James Agnew 120b93f204
Use HL7 FHIR Core Structures (#1382)
* Ongoing work on core structures suport

* Ongoing work on this merge

* Ongoing work to clean up structures

* Credit for #1179

* Address compile issues

* Latest changes

* Work on parallel execution

* Work on getting tests passing

* Add H2 to migrator

* Test fix
2019-07-14 10:16:40 -04:00
James Agnew 75f0dc993c Try to prevent an intermittent test fix 2019-07-11 21:39:41 -04:00
James Agnew 1db019b6df Test fix and try to get Travis building again 2019-07-11 20:20:27 -04:00
James Agnew 4bd60a8447 Roll back one dependency 2019-07-07 11:02:08 -04:00
James Agnew d23046b8ea Dependency version bumps 2019-07-07 10:14:08 -04:00
James Agnew 190f0a0d5a Bump several dependency versions to latest versions 2019-07-07 09:58:31 -04:00
jamesagnew cdb0006a5b Correct version of license plugin 2019-07-05 09:38:31 -04:00
jamesagnew 76c40db33a Bump license plugin version 2019-07-05 09:03:50 -04:00
James Agnew 5e44161c9d Add explicit JAR plugin version 2019-07-03 14:08:01 -04:00
Stig Rohde Døssing d25e882d9a Issue-1351: Add a BOM POM for HAPI FHIR 2019-06-28 15:18:06 -04:00
James Agnew 10d969c514
Add Consent Service (#1359)
* Initial consent svc

* Ongoing consent svc work

* Add docs

* Ongoing consent service work

* Work on consent service

* More work on consent svc

* License header updates

* Ongoing consent svc work

* Some test fixes

* Some test fixes

* More work on consent svc

* Tests working

* Test fix

* Propagate RequestDetails to everything in JPA server

* More interceptor tweaks

* Fix compile error

* One more tweak to captured SQL

* Ongoing interceptor tweaks

* Ongoing interceptor tweaks

* More interceptor tweaks

* Interceptor tweaks

* Tweaks to tests

* Fix tests

* Test fix

* Raise warnings when encoding extensions with missing values

* Consent service work

* More interceptor tweaks

* Consent interceptor tweaks

* Add logging to test
2019-06-27 16:35:29 -04:00
James Agnew c14f5c1520 Credit for #1361 2019-06-25 18:31:25 -04:00
jvi 8b4ceb8d5f changed json patch framework to slightly more maintained fork 2019-06-17 16:45:17 -04:00
Stig Rohde Døssing b56f59542a Move JettyUtil to new module 2019-06-14 18:34:45 -04:00
admin 3b35e6add4 Test Classes 2019-06-14 05:24:11 -05:00
Ken Stevens 2bf680509b
DeleteConflict hook, SearchableHashMapResourceProvider, and in-memory searching (#1341)
* Make IBundle list interface more flexible

* Make matchResourceLinks visible

* Make matchResourceLinks visible

* Pull in-memory matching functionality out of subscription module into dedicated classes in searchparam module

* Added more accessors to version independent resource classes

* improved forcedid matching (needs to be verified by James)
filter out nulls from HashMapProvider.searchAll() (hopefully no tests depend on this)

* add AnyComposition

* cleanup of Any classes

* create searchparam config so people can use that module without using subscriptions

* create searchparam config so people can use that module without using subscriptions

* fix broken test

* added derivedFrom

* renamed daoRegistry.getResourceDaoIfExists to getResourceDaoOrNull
also added method to add a new dao to the registry and retrieve registered types

* TokenParam.equals

* add error check to searchable hashmap resource provider

* added support for R4

* add successor to measure

* delete conflict hook
start with failing test

* test passes.
hook is called.

* added delete conflict hook
all delete conflict tests pass

* added javadoc

* Performance test

* test bad interceptor case

* typo

* rename criteria matcher

* added support for multiple topics

* fix method name

* add effective period

* Temporarily excluding StressTest from build to try to get Travis under time limit

* change log

* review feedback

* review feedback

* review feedback
2019-06-13 13:59:51 -04:00
Ken Stevens dd203ae28f Credit for #1337 2019-06-10 11:14:52 -04:00
jamesagnew a952663dc3 Disable OSGI mdule for now# 2019-06-09 23:51:41 -04:00
James Agnew c2aec5c1a9 Respect the _total parameter for all JPA searches 2019-06-09 05:44:49 -04:00
James Agnew 9500f6e6fe Roll back derby version for now 2019-06-07 16:27:19 -04:00
James Agnew 517b68882c Fix derby dependencies for tests 2019-06-07 11:11:25 -04:00
James Agnew cab44e9626 One more version bump for dependencies 2019-06-07 09:17:07 -04:00
James Agnew a0fa752eac A number of dependency updates 2019-06-07 09:06:30 -04:00
James Agnew 50a8c66bf5 Version bump to 4.0.0-SNAPSHOT 2019-05-30 17:13:03 -04:00
jamesagnew 73aa53be8f Release 3.8.0 2019-05-30 16:50:04 -04:00
James Agnew 13f3c02b2b Credit for #1244 2019-05-29 21:44:30 -04:00
James Agnew 83616bb53d Upgrade to newer checkstyle 2019-05-29 21:25:20 -04:00
James Agnew 96c70f6093 Credit for #1213 2019-05-29 21:22:54 -04:00
jpoth 43a8499bf6 Bump Karaf version 2019-05-29 09:31:00 +02:00
James Agnew f17fc4ce82 Credit for #1305 2019-05-23 09:09:44 -04:00
James Agnew 5f858066da Bump jackson version 2019-05-23 08:49:05 -04:00
jamesagnew aa88816d9a Credit for #1311 2019-05-22 17:13:33 -04:00
jamesagnew f5a7333c4c Bump greenmail version 2019-05-11 15:47:06 -04:00
James Agnew 37b9e1a42c Improve validation of enableWhen questionnaires 2019-04-29 14:43:42 -04:00
James Agnew 685adf7754 Revert Jetty upgrade, and improve patch error messages 2019-04-26 11:23:22 -04:00
James Agnew da962b8c10 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-04-24 14:33:28 -04:00
James Agnew 738c2c1797
Interceptor framework refactoring (#1287)
Interceptor framework overhaul
2019-04-24 14:32:30 -04:00
James Agnew f2e382a132 Swap JSON Patch provider 2019-04-24 14:10:21 -04:00
James Agnew 2ed9b39ff4 Remove useless test case 2019-04-15 16:55:54 -04:00
James Agnew c8f2e4bbc9 Return HTTP 400 for missing body on POST and PUT 2019-04-14 12:32:09 -04:00
jamesagnew 835b89f449 Build fixes 2019-04-01 18:55:55 -04:00
James Agnew e6a6c22783 Bump a few project dependencies 2019-03-31 13:57:02 -04:00
James Agnew 08c7afb804 Reduce logging in JPA server 2019-03-14 17:42:13 -04:00
James Agnew f934f76c96
Several JPA search fixes (#1231)
* Search fixes

* Add some tests

* CHangelog

* Some cleanup of the query tracker

* FIx XML issue in changelog

* Test fixes

* SOme test fixes

* Address review comments

* Fix test breakage
2019-03-11 15:49:34 -04:00
James Agnew 0f8c8d18e2 Bump version to 3.8.0-SNAPSHOT 2019-02-06 20:02:28 -05:00
jamesagnew 207015c3af Version bump to 3.7.0 2019-02-05 21:36:38 -05:00
jamesagnew 86a12bcf2a Credit for #1114 2019-02-02 11:33:08 -05:00
jamesagnew ea84f2c377 Version bump hibernate search 2019-02-02 11:26:19 -05:00
Ken Stevens 9280cde491
Subscription only registers active (#1189)
* Fixed a bug in standalone subscription subscriber:  It was adding REQUESTED subscriptions to the active subscription registry.  (Only ACTIVE subscriptions should be added.)
2019-02-01 10:14:46 -05:00
jamesagnew b46b60798a Credit for #1130 2019-01-31 05:26:14 -05:00
jamesagnew db42609ca7 Credit for #1135 2019-01-31 05:20:43 -05:00
jamesagnew 5d540d9208 Query optimization in JPA 2019-01-27 20:03:48 -05:00
jamesagnew afaa1b065f Hivernate back to 5.4.0 2019-01-23 09:38:49 -05:00
jamesagnew eee4c75300 Version bump hibernate 2019-01-23 05:57:20 -05:00
James Agnew 4367e340ae Log the version number and commit on startup 2019-01-17 16:05:54 -05:00
James Agnew 38bade0429 Credit for #1118 2019-01-13 17:22:29 -06:00
James Agnew 3c260e5ef2 Ignore unfinished test 2019-01-10 07:36:37 -07:00
James Agnew ee52d6fb31 Add SearchNarrowingInterceptor 2019-01-09 20:20:46 -06:00
James Agnew 8beccab9ab Merge branch 'master' into test-openjdk-11 2019-01-09 10:48:57 -05:00
jamesagnew b3c9b32db4 Credit for #1065 and forward-port fix to R4 provider 2019-01-09 07:19:55 -05:00
James Agnew 1bfa29bbcc Site updates 2018-12-28 11:42:21 -05:00
James Agnew c462b5ba3e Prep new site version 2018-12-28 09:16:48 -05:00
jamesagnew 49e418edf0 Adjust migrator to handle updated Hibernate version 2018-12-23 15:11:44 -05:00
jamesagnew 4599a10180 Merge branch 'master' into test-openjdk-11 2018-12-23 14:19:59 -05:00
James Agnew 9d3904ef3e Fix #1142 - Upgrade Spring Boot to latest version 2018-12-23 13:10:03 -05:00
James Agnew a0cb7edd08 Version bump a few dependencies 2018-12-22 20:13:03 -05:00
jamesagnew 226e31b0d9 Reenable karaf 2018-12-22 15:07:26 -05:00
jpoth cda84c4b3a Karaf related fixes for jdk11 2018-12-22 13:25:09 -05:00
jamesagnew ea80d03a74 Credit for #1051 2018-12-21 05:42:39 -05:00
James Agnew 11b8304cb4 Fix case sensitivity issue 2018-12-13 08:31:35 -05:00
jamesagnew 3109a269b3 Attempting to get ErrorProne working on JDK11 2018-12-08 18:22:17 -05:00
jamesagnew 9a97d21660 Bump compiler plugin 2018-12-08 18:06:39 -05:00
jamesagnew 3a3b81a6a8 Preparing things for OpenJDK 11 2018-12-08 17:52:48 -05:00
Ken Stevens 6baee4dc3f
Standalone subscription (#1125) 2018-11-30 17:19:16 -05:00
James Agnew 14c0a52831 Fix xml typo 2018-11-16 09:21:53 +01:00
James Agnew e75d2e1f10 Credit for #1117 2018-11-15 13:37:32 +01:00
James Agnew 84acafe3af Streamline expunge operation 2018-11-15 11:37:16 +01:00
James Agnew 75210d614b Bump to 3.7.0-SNAPSHOT 2018-11-12 22:37:52 -05:00
James Agnew 63af04a7b4 Prepare for 3.6.0 release 2018-11-12 05:40:55 -05:00
James Agnew e5b04710ea Version bump a few dependencies 2018-11-11 17:06:40 -05:00
James Agnew 7e2e53a354 Credit for #1071 2018-11-08 13:33:25 -05:00
James Agnew 9fee827398 Credit for #1103 2018-11-08 13:24:24 -05:00
jamesagnew 692bdb5fdd FIx bad merge 2018-11-07 18:29:37 -05:00
jamesagnew 3121334bfd Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-11-07 18:28:28 -05:00
jamesagnew ca9268970e Site updates 2018-11-07 18:27:08 -05:00
James Agnew 76cd3f6b47 Allow client assigned IDs to be purely numeric in JPA server if
configured to do so
2018-11-07 18:25:50 -05:00
James Agnew bc72093555 Add reindexing support based on table instead of column 2018-11-04 20:00:27 +01:00
jamesagnew 8955a9e54d Add threading to migrator 2018-10-31 05:50:50 -04:00
jpoth 4edb9c32f8 Upgrade Apache Karaf to 4.1.6 2018-10-15 12:36:42 +02:00
James Agnew 706e004b9d Bump to 3.6.0-SNAPSHOT 2018-09-19 10:24:48 -04:00
jamesagnew 3bfce11d2c Add OSGI dependency for commons-text 2018-09-17 16:06:11 -04:00
jamesagnew 6cfa452d8c Bump PGSQL version 2018-09-17 14:35:54 -04:00
James Agnew daef975734 Version bump to 3.5.0 2018-09-08 07:22:21 +08:00
James Agnew 4852b0b60f Work on migration 2018-09-08 07:14:43 +08:00
James Agnew f5d567cd00 Work on migrator 2018-09-08 03:30:35 +08:00
James Agnew 0f7c4219cb Merge branch 'master' into jpa_migration 2018-09-02 06:05:11 +08:00