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1441 Commits

Author SHA1 Message Date
jamesagnew
f9946fee61 Fixes to get the build passing once more 2018-05-15 07:34:44 -04:00
James Agnew
a3ff08d9ec
Replace phloc with ph for #775 (#930) 
* Replace phloc with ph

* Enable schematron tests

* Make HAPI-FHIR ph-schematron on OSGI

* Work on getting tests passing

* Another test fix

* Fix up transaction handling for DSTU2

* Add changelog

* Avoid double transaction

* Dont use readonly

* One more test fix

* Update to snapshow build

* Resolve a circular dependency

* Try to fix tests

* Solve recurring NPE in DSTU2 tests

* Fix one more test

* Test fix

* More test threading fixes

* One more attempt to get tests passing

* Refactoring for tests

* Refactoring for tests
 2018-05-14 17:38:40 -04:00
jamesagnew
ccb859fdbe FIxes to get the synced build working 2018-05-13 08:08:34 -04:00
jamesagnew
150f27a9ca Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-05-12 19:40:31 -04:00
jamesagnew
3d762b984b Sync to R4 definitions 2018-05-12 19:35:42 -04:00
James Agnew
9d24e8b040 Use HTTP 409 for conflict when two threds update the same resource 2018-05-11 17:41:07 -04:00
James Agnew
f1ba0016b2 Improve the error message thrown by JPA server 2018-05-11 17:03:48 -04:00
James Agnew
b17eebd8d2 Squashed commit of the following: 
commit 2be11651c212ede9d50956ba9d4a802885e9dbed
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:50:53 2018 -0400

    Update changelog

commit b3bb5f9052ecebce87588e2d5f5be983fbd0fd2e
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:19:28 2018 -0400

    Parameter updates

commit f6b1082ba46f4d0d47d3e0094e904d527b0ebf75
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 07:24:30 2018 -0400

    More test fixes

commit 81a69c265f7347f6a23c73b827c79a8a4051b21b
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:26:48 2018 -0400

    Fix compile error

commit 935938e92c697be1940b788a46c38ffd5ce84b84
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:25:18 2018 -0400

    Another test fix

commit 43568a1f8dd6325bebba2cd47ffb42bee7f12aa6
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:18:06 2018 -0400

    Fix compile error

commit e95894e643dda0a70ab5ab7be4363cae4ce5c4e6
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:13:50 2018 -0400

    More work on tests

commit 9393fb8f4f93e69f80293c0488cc16f74613f25c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 05:36:27 2018 -0400

    One more fix

commit 437f5051e4742eb500ec1eb1852e4c6105927c51
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 21:32:10 2018 -0400

    Work on validator

commit 20c51add4fbb5c33d7b5f8517fe9bf9a4f314292
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 19:34:10 2018 -0400

    Validator fix

commit 7bf2b0a0e93b71f6fbc46ab3b1dbd0fba6367959
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 18:44:04 2018 -0400

    Fix test

commit adc73e75c9b392ed964588f03970ab1afdb4cdef
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 17:22:34 2018 -0400

    Merge validator
 2018-05-10 11:53:32 -04:00
Diederik Muylwyk
d97fb8f5cf
709 the conceptmap operation called translate needs to be implemented (#923) 
The ConceptMap operation $translate has been implemented.
 2018-05-10 10:52:56 -04:00
James Agnew
a0c40cf98a Move a few more constants around 2018-05-05 12:21:56 -04:00
James Agnew
5c505b7cd7 Refactor operations to use constants for their names 2018-05-05 08:27:45 -04:00
James Agnew
7688be1231 Work on getting java9 building 2018-05-03 18:34:29 -04:00
jamesagnew
f66e6d055e Add license header 2018-05-02 14:54:11 -04:00
James Agnew
bb25a97e66 FIx up logging rule 2018-05-02 14:34:55 -04:00
James Agnew
220cb1716f Add a new rule 2018-05-02 14:28:01 -04:00
James Agnew
45360d80cb Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-05-02 14:19:28 -04:00
James Agnew
87666a1622 Use a direct subclass for the resource cache 2018-05-02 14:18:53 -04:00
jamesagnew
34d9646d8b Headers 2018-05-02 06:18:16 -04:00
James Agnew
994f2992d1 Return codesystem ID in upload terminology response 2018-05-01 07:56:02 -04:00
James Agnew
e558132dba Restore deleted file 2018-04-30 16:48:39 -04:00
jamesagnew
0af8fbc5d3 Make expunge globally disabled by default 2018-04-29 07:47:26 -04:00
jamesagnew
770246583d Restore default constructor 2018-04-28 15:04:39 -04:00
jamesagnew
5bd191d192 FIx some failing tests 2018-04-28 13:21:48 -04:00
James Agnew
593a705365 Performance enhancements on the CapabilityStatement generator for JPA 
server
 2018-04-28 11:06:42 -04:00
jamesagnew
e299b062a6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-04-24 19:14:56 -04:00
jamesagnew
f1db751d1e Update headers 2018-04-24 19:14:33 -04:00
James Agnew
09b1f547d0 Add expunge 2018-04-24 15:11:00 -04:00
James Agnew
07e7af746f Work on expunge operation 2018-04-22 22:03:23 -04:00
James Agnew
591539cf13 Add expunge method 2018-04-22 18:34:56 -04:00
jamesagnew
51216c0010 Start work on expunge operation 2018-04-22 15:29:57 -04:00
James Agnew
8ec5ca69bb Add another translation type 2018-04-21 15:25:23 -04:00
James Agnew
488890155c Loinc uploader updates 2018-04-21 14:32:17 -04:00
James Agnew
1ff50cb0db Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-04-17 18:26:39 -04:00
James Agnew
162069776a Correctly handle encoding contained resources where some have user 
assigned IDs and some do not
 2018-04-17 18:26:06 -04:00
jamesagnew
aecb315886 Loinc updates 2018-04-15 18:34:56 -04:00
jamesagnew
13242d77ed Merge branch 'loinc_loader_update' of github.com:jamesagnew/hapi-fhir into loinc_loader_update 2018-04-15 17:43:16 -04:00
jamesagnew
0c955f7f27 More loinc updates 2018-04-15 17:20:36 -04:00
James Agnew
8bfd7913c8 More work on loinc loader 2018-04-15 17:19:34 -04:00
James Agnew
b3a9ea263f Fixes to loinc mapping 2018-04-10 21:19:00 -04:00
James Agnew
260aa9e9fa Improve the loinc uploader 2018-04-06 17:35:19 -04:00
jamesagnew
26710f7608 Increase column lengths 2018-04-06 17:29:03 -04:00
James Agnew
f013448917 More work on updating term services 2018-04-06 17:06:34 -04:00
James Agnew
7d6582fe73 More updates to loinc uploading 2018-04-06 16:41:28 -04:00
James Agnew
22b8e05b1f Add some logging 2018-04-06 16:14:59 -04:00
James Agnew
0f269a1ab1 Correctly save deferred concepts 2018-04-06 14:23:41 -04:00
James Agnew
3eab3c5fab More mapping for loinc RADS 2018-04-06 12:23:10 -04:00
James Agnew
2f4bcfe5d6 Understand equal mappings 2018-04-06 11:25:46 -04:00
jamesagnew
7334800684 Better logging 2018-04-06 09:50:41 -04:00
James Agnew
d624556e18 Some updates to the loinc mapper 2018-04-06 09:50:18 -04:00
James Agnew
f0f93d2330 Merge branch 'loinc_loader_update' of github.com:jamesagnew/hapi-fhir into loinc_loader_update 2018-04-06 09:13:08 -04:00