efae77a330
Added changelog entries.
2019-09-26 11:36:55 -04:00
b2c13f3018
Work on codecov integration
2019-09-25 13:25:59 -04:00
57377f5557
Fix #1483 - Don't let RP methods handle a request with includes if the
...
method doesn't understand them
2019-09-25 10:54:37 -04:00
bd763d728b
Merge branch 'master' into ks-source-request-id-append-bug
2019-09-24 14:49:39 -04:00
0e90867a65
fixed meta.source request append bug
2019-09-24 14:35:34 -04:00
9b2826f3c6
Handle searches with chained slash value ( #1503 )
...
* Work on test case for bug with searches
* Work on tests
* Fix issue with slashes in reference chain parameter for JPA server
2019-09-24 14:31:05 -04:00
f5788341f2
Add no-shrink-columns option to migrator ( #1500 )
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* Add no-shrink-columns option to migrator
* Address review comments
2019-09-23 18:44:51 -04:00
2a2e8e0ab8
Merge pull request #1501 from jamesagnew/1483-need-consistent-assignment-of-fullurl-id-and-url-for-loinc
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Fixed inconsistent IDs and URLs for LOINC.
2019-09-23 15:59:21 -04:00
6f44d7c360
Fix issue deleting CodeSystem resources ( #1316 )
...
* Fix deleting CodeSystem resources
* Test fixes
* Address review comments
2019-09-23 15:58:57 -04:00
004f42cdcc
Clean up docs
2019-09-23 15:56:02 -04:00
25798ee3e2
Added changelog entry.
2019-09-23 15:54:42 -04:00
7a7e876b93
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-09-23 09:57:17 -04:00
2bcb1c9c1c
Work on docs
2019-09-23 09:56:29 -04:00
9d4b5f3041
Merging master into working branch to resolve conflicts.
...
# Conflicts:
# src/changes/changes.xml
2019-09-23 09:08:56 -04:00
520b50dfdc
Ongoing work on docs migration
2019-09-22 15:54:52 -04:00
0a5eca0821
Work on docs
2019-09-22 13:25:50 -04:00
0cc35699b8
Specify full path for LOINC filenames to avoid duplicates.
2019-09-20 18:43:38 -04:00
a989a746b0
Fix #1494 - Upgrade to new :recurse syntax for R4 include/revinclude
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statements
2019-09-20 09:38:29 -04:00
6e98c02862
Fix #1495 - Avoid NPE in RuleBuilder
2019-09-20 08:57:01 -04:00
20d33afb6f
Credit for #1489
2019-09-19 20:48:17 -04:00
ad01d7598c
Credit for #1489
2019-09-19 20:41:02 -04:00
2be63a1650
Test fixes
2019-09-19 09:45:07 -04:00
30dfde645b
Upgrade to Fontawesdome 5 and prevent uploading resources with binary
...
storage extensions
2019-09-19 05:28:05 -04:00
4a751cbfc5
Integrate Bulk Export ( #1487 )
...
* Start working on subscription processor
* Work on new scheduler
* Test fixes
* Scheduler refactoring
* Fix test failure
* One more test fix
* Updates to scheduler
* More scheduler work
* Tests now all passing
* Ongoing work on export
* Ongoing scheduler work
* Ongoing testing
* Work on export task
* Sync master
* Ongoing work
* Bump xml patch version
* Work on provider
* Work on bulk
* Work on export scheduler
* More test fies
* More test fixes
* Compile fix
* Reduce logging
* Improve logging
* Reuse bulk export jobs
* Export provider
* Improve logging in bulk export
* Work on bulk export service
* One more bugfix
* Ongoing work on Bulk Data
* Add changelog
2019-09-17 16:01:35 -04:00
38cf830384
Accurately reflect codesystem URL
2019-09-16 15:55:32 -04:00
08835c1615
FIx a failure in FhirTerser when visiting custom types
2019-09-13 09:11:47 -04:00
9420bca341
Merge branch 'master' into ks-in-memory-date-compare
2019-09-10 13:25:29 -04:00
0843a2b02d
Avoid leaking details when canSeeReource rejects a resource from consent
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service
2019-09-10 11:14:44 -04:00
7cfbf710fe
Merge remote-tracking branch 'remotes/origin/master' into ks-in-memory-date-compare
...
# Conflicts:
# src/changes/changes.xml
2019-09-09 14:46:25 -04:00
9e83f1d40a
changelog
2019-09-09 14:22:42 -04:00
718fcb28a5
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-09-06 14:58:03 -04:00
722c7a8211
Work on GraphQL updates
2019-09-06 14:56:17 -04:00
bc821a7060
Merge remote-tracking branch 'remotes/origin/master' into ja_20190822_1440_infinispan_query_cache
2019-09-05 15:59:45 -04:00
7105890d2f
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-09-05 14:49:29 -04:00
7d162c50db
Don't guess content type for create/put
2019-09-05 14:47:04 -04:00
49bfe9fb0c
Merge remote-tracking branch 'remotes/origin/master' into ja_20190822_1440_infinispan_query_cache
2019-09-04 21:08:04 -04:00
490ae597d3
Website tweak
2019-09-04 16:23:10 -04:00
5d3c2257de
Correct survey link
2019-09-04 15:45:56 -04:00
fa62ab9c9e
Merge remote-tracking branch 'remotes/origin/master' into ja_20190822_1440_infinispan_query_cache
...
# Conflicts:
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
# src/changes/changes.xml
2019-09-04 13:31:00 -04:00
17a50765dc
4.0.1 release
2019-09-04 05:33:57 -04:00
8ce8f1e864
Credit for #1461
2019-09-01 18:41:17 -04:00
f59bdc4afe
Reuse FHIRPath across JPA requests
2019-08-29 14:13:31 -04:00
c5a88444b6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-08-29 14:00:37 -04:00
956bb39327
Resolve an inefficient regex expression
2019-08-29 13:59:31 -04:00
259426b0dd
Merge remote-tracking branch 'remotes/origin/master' into ja_20190822_1440_infinispan_query_cache
...
# Conflicts:
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
# src/changes/changes.xml
2019-08-28 10:37:17 -04:00
70d0a8aa8f
Get patch working ( #1449 )
2019-08-27 05:42:15 -04:00
0ee15874ca
loinc-all ValueSet is now created automatically when loading LOINC terminology.
2019-08-26 16:42:37 -04:00
b01d59d5a0
Added changelog entry.
2019-08-26 14:47:50 -04:00
3f14a7a68b
Added changelog entry for switch from Derby to H2 for HAPI FHIR CLI server.
2019-08-26 09:54:05 -04:00
6fa27934a8
Tests all seem to be working
2019-08-23 10:14:13 -04:00
9428430822
Add support for Resource.meta.source ( #1438 )
...
* Work on indexing source
* Work on tests
* Refactor query count tests
* Unit test fixes
* Add some tests
* DAO fix
* Fix compile error
* Unit test fix
* Cleanup
* Test fix
* Fix compile error
* One more test fix
2019-08-21 11:17:43 -04:00
ce44115152
Handle cascading deletes correctly with circular references ( #1435 )
...
* Handle cascading deletes correctly with circular references
* A bit of cleanup
* Address review comments
* FIx some javadocs
* Fix an incorrect message
2019-08-20 10:08:34 -04:00
ce879b3863
Fix versioned API incompatibility with GraphQL
2019-08-20 08:35:27 -04:00
ab5333f370
Fix subscription config file
2019-08-17 16:15:55 -04:00
34c1879973
Add changelog
2019-08-17 14:31:30 -04:00
9e8af58e81
Fix reference params via filter
2019-08-16 14:56:36 -04:00
afb682dfe9
Handle AuthorizationInterceptor rejection of by-type reads on the wrong type earlier in the process
2019-08-15 09:16:45 -04:00
4490c9ca09
Correct the eq operator on the _filter parameter
2019-08-14 14:39:40 -04:00
406808da8d
Credit for #1357
2019-08-14 14:37:20 -04:00
85cc0b4243
Fix homepage
2019-08-14 13:49:31 -04:00
9d37972649
Prepare docs for release
2019-08-14 13:33:12 -04:00
b4fece0ae9
Add interceptor hook for graphql calls
2019-08-13 14:46:50 -04:00
a1e1cf4e56
Credit for #1375
2019-08-13 05:37:40 -04:00
23c05ac2a9
Credit for #1388
2019-08-13 05:29:55 -04:00
31e374ded8
Credit for #1220
2019-08-12 13:35:27 -04:00
0c9e5ec1ea
Support GraphQL for R3/4/5 ( #1424 )
...
* Work on grpahql enhanbcements
* Add some more chars to the sanitizer function
* Add changelog
2019-08-12 08:24:32 -04:00
a1acd7525e
Changelog update for new structures
2019-08-11 10:19:05 -04:00
dd0cb10dbb
validate operation ignores parameter profile ( #1417 )
...
* This should be working now - need to check tests
* Add a changelog and some docs
* One more test fix
* Tests should be passing
* Fix compile
* Test fixes
* Ignore outdated DSTU2 validation test
2019-08-07 15:31:59 -04:00
60eab3ad70
Add support for R5 resources ( #1416 )
...
* Work so far on R5 support
* Add support for R5
* Docs changes
2019-08-06 17:30:31 -04:00
39c2a95ce7
Credit for #1321
2019-08-01 09:29:43 -04:00
e20443010d
Credit for #1404
2019-08-01 06:38:37 -04:00
04ce9cfc1a
Add support for uploading custom terminology using the
...
$upload-external-code-system operation
2019-07-30 17:30:18 -04:00
a4ca5374ec
Add terminology delta operations ( #1401 )
...
* Start work on delta operations
* Add changelog
* Some build fixes
* Move upload terminology command to CodeSystem resource
* Updates
* Some test fixes
* Add changelog
* Some test fixes
* More test fixes
* Test fix
* Add additional tests
* Transaction boundary fixes
2019-07-29 17:46:42 -04:00
8158292665
Allow operations to better work across multiple versions of FHIR
2019-07-26 05:46:37 -04:00
7e3d062d15
Switch default client to JSON ( #1392 )
...
* Start work on changing over
* Update tests
* More test fixes
* Work on generalizing binary access provider a bit
* Add expunge capability to binary storage, and also support actual binary
resources
* Work on binary provider
* Get the DB bound binary storage service working
* Test fixes
* Compile fix
* Fix compile error
* Test fix
* Test tweak
* Trying to figure out an intermittent failure
* Work on tests
* More work on tests
* Another test fix
2019-07-22 21:27:10 -04:00
4665ea82b3
Documentation tweak
2019-07-19 10:57:20 -04:00
13dae527d1
Fix #1390 - DiagnosticReport template correction
2019-07-19 05:44:08 -04:00
5bf4fa22e7
Allow patching in tranactions
2019-07-18 16:41:07 -04:00
ee7cff9445
Rename a few columns to not conflict with res´rved words
2019-07-18 05:47:32 -04:00
55c0d5b604
Add binary storage for Attachments ( #1386 )
...
* Have this working now
* Add utility method
* Build fixes
* Add changelog
2019-07-17 18:31:17 -04:00
76384abefb
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-07-17 10:57:43 -04:00
456aac5e16
Resolve "experimental implementation for storing and expanding large ValuetSets cont'd..." ( #1376 )
...
* Added experimental implementation for storing expanded ValueSets in terminology tables.
* Minor tweak to log message for consistency.
* Another minor tweak to log message for consistency.
* Renamed test.
* Initial work on ValueSetCodeAccumulator.
* Renamed addCode() to includeCode(); added excludeCode().
* Incremental work on large ValueSet expansion support; refactoring.
* Incremental work on large ValueSet expansion support; accounting for designations.
* Incremental work on large ValueSet expansion support; fixed missing designation.language in expanded ValueSets.
* Incremental work on large ValueSet expansion support; now actually populating TermConceptDesignation; added TermValueSetConceptDesignation as well.
* Missed a word.
* Tweak changelog entries.
2019-07-16 17:12:21 -04:00
f8444b90c8
Test tweak
2019-07-14 18:11:37 -04:00
7831e8a0ed
Add support for $snapshot generation and validation based on snapshots
2019-07-14 16:15:56 -04:00
120b93f204
Use HL7 FHIR Core Structures ( #1382 )
...
* Ongoing work on core structures suport
* Ongoing work on this merge
* Ongoing work to clean up structures
* Credit for #1179
* Address compile issues
* Latest changes
* Work on parallel execution
* Work on getting tests passing
* Add H2 to migrator
* Test fix
2019-07-14 10:16:40 -04:00
ba4bb005bc
Switch JPA unit tests to use H2 ( #1381 )
...
* Start working on this
* Ongoing fixes to H2 branch
* Work on fixing tests
* Updated fixes
* Some test fixes
* More work on H2 migration
* Fixes to try and get the H2 migration building
* Test seem to be passing!
* Tweaks to locale randomization
* Add changelog
2019-07-13 17:22:43 -04:00
accf57230b
review feedback
2019-07-12 17:13:17 -04:00
78aec06c4d
changes.xml
2019-07-12 13:38:45 -04:00
26ab115ff5
changes.xml
2019-07-12 13:34:32 -04:00
dca55d054b
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-07-11 18:17:09 -04:00
32a8e1aead
Omit extensions when encoding in summary mode (except for
...
CapabilityStatement)
2019-07-11 16:28:50 -04:00
9b938262e6
fixed nostore -> no-store
2019-07-10 16:31:22 +02:00
0fb8db11a2
Add new pointcut: PROCESSING_COMPLETED
2019-07-09 14:32:11 -04:00
e50caaa899
Credit for #1370
2019-07-08 10:55:01 -04:00
34f7d4ddbd
Refactor ServerConformanceProvider so that it no longer keeps any state
2019-07-07 12:57:31 -04:00
4bd60a8447
Roll back one dependency
2019-07-07 11:02:08 -04:00
d23046b8ea
Dependency version bumps
2019-07-07 10:14:08 -04:00
190f0a0d5a
Bump several dependency versions to latest versions
2019-07-07 09:58:31 -04:00
1c7c83cd8e
Add an isEmpty() method to IBundleProvider
2019-07-05 16:16:39 -04:00
2a6436af23
Rename columns in code mapping
2019-07-05 09:03:03 -04:00
Diederik Muylwyk
jamesagnew
Ken Stevens
Patrick Werner