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1172 Commits

Author SHA1 Message Date
jamesagnew 20e04a7c80 Merge branch 'dstu3_structs' 2016-04-03 18:16:02 -04:00
jamesagnew 18b3d0df65 Update to DSTU3 Montreal definitions 2016-04-03 18:14:31 -04:00
jamesagnew 6d0dcc0213 More work on auth module 2016-04-02 08:59:01 -04:00
James Agnew c345209ce4 Fix #318 - Apply setDefaultTypeForProfile to contained resources 2016-04-01 17:10:49 -04:00
James Agnew 21b42acc94 Update licenses 2016-03-29 13:01:51 -04:00
James Agnew 46ba27ec8f Work on security interceptor 2016-03-28 20:51:27 -04:00
James Agnew b2f11e0bfc Fix #317 - Allow search params to be used when doing REST operations 2016-03-26 13:44:54 -04:00
James Agnew 6ffb1c8c56 Fix #312 - Don't fail if extension list contains a null 2016-03-25 19:27:18 +01:00
James Agnew f49130baf8 Add unit tests and documentation to the JAX-RS client implementation 2016-03-25 19:17:41 +01:00
James Agnew f9fa6265df Correctly handle JPA search by token with system but no code 2016-03-25 16:20:43 +01:00
James Agnew c6f06548fc Fix #315 - Use custom types for searches and other client operations 
when requested
 2016-03-24 11:09:41 +01:00
James Agnew 1adfc4b4d9 Fix #315 - Allow declaring of custom types for specific profiles 2016-03-22 11:46:08 +01:00
James Agnew ab4deb406c Allow runtime query of bound enum type 2016-03-18 19:41:43 +01:00
James Agnew 82c6d82444 Sere up Binary resources as binary content even if the browser puts 
application/xml in the Accept header
 2016-03-18 18:38:44 +01:00
jamesagnew 9aa7eea274 Add mode to parser to force it to not encode certain elements when serializing 2016-03-16 07:53:21 -04:00
James Agnew 00ced6a652 Improve performance of _lastUpdated queries in JPA server 2016-03-14 06:31:45 -04:00
James Agnew 6ddf91d9e2 Correctly handle extended operation in annotation based client where the 
response is a raw resource and not a Parameters resource
 2016-03-12 15:10:02 -05:00
James Agnew 452316aed7 Fix #313 - Do not treat OPTIONS [base]/foo as a request for server's 
conformance statement. Thanks to Michael Lawley for reporting!
 2016-03-12 14:53:20 -05:00
James Agnew ce253bed70 Properly deserialize bound codes 2016-03-12 13:23:55 -05:00
jamesagnew 232afee955 Improved error messages for #305 2016-03-11 07:56:00 -05:00
jamesagnew ed92f64e52 Fix #305 - Don't allow update resource body IDs to be missing or incorrect 2016-03-10 07:44:05 -05:00
jamesagnew 3897167518 Return correct bundle type on $everything operation 2016-03-09 23:11:40 -05:00
James Agnew 8de41ca8b4 Attempting to reduce memory usage during tests 2016-03-06 14:38:18 -05:00
jamesagnew 99a4b2c29e Refactor JPA SearchBuilder 2016-03-05 20:46:04 -05:00
jamesagnew b147083f5a Fix #308 - Remove unneded warning on parsing declared extension 2016-03-02 22:18:33 -05:00
jamesagnew 970bc3ed89 One more test for #304 2016-03-02 07:29:09 -05:00
jamesagnew 94f50686bc Fix #304 - Better error message if wrong generic type is used 2016-03-02 07:06:17 -05:00
jamesagnew 3fd9f9518a Handle unexpected extensions when parsing using IParserErrorHandler 2016-03-02 06:52:46 -05:00
jamesagnew 496d866f48 Fix #274 - Primitive elements with no value but an extension were sometimes not encoded correctly in XML, and sometimes not parsed correctly in JSON. 2016-02-28 22:15:43 -05:00
jamesagnew 66ec863bde Fix build 2016-02-28 21:19:39 -05:00
jamesagnew ed5bffba9e Fix #299 - Don't crash if the client receives extensions in Bundle.entry.search 2016-02-28 19:38:54 -05:00
jamesagnew c7d3f39457 Fix #296 - Handle :missing qualifier on QuantityParam 2016-02-28 18:32:43 -05:00
jamesagnew d8c571dfdc Just some cleanup 2016-02-28 18:25:20 -05:00
jamesagnew c14a1330b4 Fix #302 - Don't crash server when adding profiles 2016-02-28 16:07:28 -05:00
jamesagnew 524b16b1e8 Fix header generation for clients 2016-02-28 15:44:10 -05:00
jamesagnew 1da5855c9c Add Eclipse files to git 2016-02-28 14:02:29 -05:00
jamesagnew f1e1ee9ff9 Merge JAX-RS client fixes 2016-02-28 13:34:57 -05:00
jamesagnew 69450c7dab Merge branch 'master' into jaxrs-client 2016-02-27 09:48:36 -05:00
James Agnew 7fdbee6f21 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-02-26 18:20:32 -05:00
James Agnew 39f6420066 Start working on compartment support 2016-02-26 18:16:35 -05:00
James Agnew d383b402d1 Correct handling of Binary resources in client and server where the 
binary contains embedded FHIR content
 2016-02-25 14:31:26 -08:00
James Agnew 4a26064cd6 In the client, the create/update operations on a Binary resource (which 
use the raw binary's content type as opposed to the FHIR content type)
were not including any request headers (Content-Type, User-Agent, etc.) Thanks to Peter Van Houte of Agfa Healthcare for reporting!
 2016-02-25 12:54:52 -08:00
James Agnew d11cbab15c Don't add WWW-Authenticate header to response on AuthenticationException 2016-02-25 11:03:04 -08:00
petervanhoute d64cf57b0d Inclusion of jaxrs-client : complete removal of the dependencies for jaxrsserver project to apache httpclient and httpcore and only rely on jax-rs 2016-02-25 13:38:31 +01:00
petervanhoute f8ea639af9 Merge remote-tracking branch 'remotes/petervanhoute/jax-rs-client': inclusion of jaxrs client by addition of interfaces around the apache client classes 2016-02-24 18:04:49 +01:00
James Agnew 1ba0ae3960 Support inline match URL references, per Simone's requast for the next 
connectathon
 2016-02-23 13:12:30 -08:00
jamesagnew fd2eaff12d Fix javadoc 2016-02-19 06:53:23 -05:00
jamesagnew 6ce4056f7a Fix #298 - Don't handle /metadata for methods other than GET 2016-02-19 06:40:07 -05:00
jamesagnew 43bdfc0345 Fix #297 - Resource not populated in ActionRequestDetails for validate method 2016-02-19 06:21:05 -05:00
jamesagnew 4975d212fa Add userdata map to interceptors which can be passed around 2016-02-17 08:05:55 -05:00
jamesagnew 9b304748ad Work on terminology service 2016-02-16 21:29:00 -05:00
jamesagnew c1141eb18f Reorganize how search param prefixes are handled and modelled based on new DSTU2 style prefixes 2016-02-15 10:05:39 -05:00
jamesagnew 23f9292b50 Add support for comments in XML and JSON parsing/encoding 2016-02-08 22:05:17 -05:00
James Agnew 961cde41bd Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-02-08 14:22:20 -05:00
James Agnew f21851099c Version bump 2016-02-08 13:59:09 -05:00
jamesagnew d93c54c0aa Version bump to 1.5 2016-02-06 14:18:56 -05:00
jamesagnew 0ff111be87 Fix #291 - Don't fail the server for untyped list returns 2016-02-06 14:18:04 -05:00
petervanhoute f9e4398c89 fix pom 2016-02-05 14:59:10 +01:00
James Agnew 68b816dce7 Prepare for 1.4 release 2016-02-03 16:56:32 -05:00
James Agnew e0e52f96c6 Version bump to 1.4 (finally!) 2016-02-03 15:25:32 -05:00
James Agnew def7fc93e0 Merge pull request #289 from petromykhailysyn/master 
ServletContextPath can start with servletPath, it should be taken into consideration
 2016-02-03 14:06:18 -05:00
jamesagnew 93d9011691 Fail server if conditional param is not of type String 2016-02-02 07:11:18 -05:00
jamesagnew 32daeb6f58 Switch DSTU2.1 to DSTU3 per FMB's decision 2016-02-01 08:55:58 -05:00
James Agnew 914f615b8e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-01-28 11:35:16 -05:00
jamesagnew ecc48317f2 Version bump dependencies 2016-01-28 08:31:19 -05:00
jamesagnew 00f0ea4a0b Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-01-27 08:36:10 -05:00
jamesagnew 1bc35f1ba3 Support modifiers on token parameters 2016-01-27 07:05:41 -05:00
petromykhailysyn a7313023f7 Revert "If servletContextPath is not root (application is deployed not to the root) we should take it into consideration while determinating server base." 
This reverts commit 0e3bb5a797.
 2016-01-26 17:02:24 +02:00
petromykhailysyn 83823aad35 ServletContextPath can start with servletPath, now it's taking into consideration while determinate contextIndex. 2016-01-26 16:29:16 +02:00
James Agnew 7ed14d538a Remove warning 2016-01-24 14:53:40 -05:00
petromykhailysyn 0e3bb5a797 If servletContextPath is not root (application is deployed not to the root) we should take it into consideration while determinating server base. 2016-01-22 10:42:36 +02:00
Matt Blanchette 0f835b5e55 Exposing http client request pool max parameters on restful client factory: 
* added setters on restful client factory to allow changing max total connections and max connections per route for pooling http connection manager
* added defaults for max total connections and max connections per route on restful client factory interface
 2016-01-20 11:50:49 -05:00
jamesagnew 1ba03f4a9b Fix #283 - Remove servlet 3.0 dependency where possible 2016-01-20 08:11:03 -05:00
jamesagnew 944afc2785 Add better constructors for date types 2016-01-20 07:40:57 -05:00
James Agnew f9960b22d5 Clean up validation 2016-01-15 18:44:28 -05:00
James Agnew d290110126 Fix validation 2016-01-15 18:02:20 -05:00
James Agnew 589059256f Correct issues uncovered during connectathon 2016-01-11 07:42:13 -05:00
petervanhoute 8dadc77420 create jax-rs client 2016-01-08 12:01:56 +01:00
petervanhoute b6d3a003d3 move client api-classes into api package 2016-01-08 11:47:00 +01:00
petervanhoute 1271c36d1b create a jax-rs client 2016-01-08 10:50:04 +01:00
James Agnew c1afb4f54d Get overlay working for DSTU2.1 2016-01-07 15:04:56 -05:00
James Agnew 0c8c414784 Try to get travis working 2016-01-07 11:17:54 -05:00
James Agnew 479da24cfb Bump license files 2016-01-07 08:50:07 -05:00
James Agnew a54cb06c03 More travis cleanup 2016-01-06 14:02:20 -05:00
jamesagnew 56620eebfb Clean up testpage-overlay to work with DSTU2.1 2016-01-06 08:49:24 -05:00
James Agnew 2e434650ea Fixed to testpage overlay for DSTU2.1 2016-01-05 17:02:37 -05:00
jamesagnew b7aa4e15b9 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-01-05 08:31:24 -05:00
jamesagnew 59da230702 Improving validation documentation 2016-01-05 07:20:54 -05:00
James Agnew 7005cd52d9 Performance tweaks to the validator and get the DSTU2.1 endpoint working 
with validation
 2016-01-04 17:57:00 -05:00
jamesagnew 685bd9345b Add request/response validator interceptors 2016-01-03 21:52:11 -05:00
jamesagnew 5789db8743 Remove dependency on cobertura at compile time 2016-01-02 10:55:52 -05:00
jamesagnew c8365ab566 Fix build 2016-01-01 23:18:44 -05:00
jamesagnew 718a26671f DSTU2.1 structures working 2016-01-01 16:59:19 -05:00
jamesagnew 056900f324 Lots more work on DSTU2.1 structures 2015-12-30 11:27:12 -06:00
jamesagnew 7692e5d714 More work on DSTU2.1 structs 2015-12-22 09:32:06 -05:00
jamesagnew 2469aa3725 Lots of DSTU2.1 structure work 2015-12-20 23:35:47 -05:00
jamesagnew aaf85f2323 Lots of work on DSTU2.1 structures 2015-12-20 09:29:52 -05:00
jamesagnew 6ac62a5b46 Merge branch 'master' into hl7org_dstu21 2015-12-15 20:33:31 -05:00
jamesagnew 3005c9a766 Still working on unit tests 2015-12-15 09:11:01 -05:00
jamesagnew 22ff1db183 Work on tests 2015-12-15 07:14:21 -05:00
jamesagnew 2b0a800d98 travis.... 2015-12-14 22:44:05 -05:00
jamesagnew c8535b72b6 More travis 2015-12-14 22:34:53 -05:00
jamesagnew 0bf5172de6 More travis work 2015-12-14 22:28:03 -05:00
jamesagnew b2a9836cda More logging to try and figure out the travis failures 2015-12-14 22:12:54 -05:00
jamesagnew a623003a56 Fix #240 - Support target resource type in server _include and _revinclude values 2015-12-14 21:50:35 -05:00
jamesagnew d95bd269c0 Correctly encode value[x] field names when the datatype is a profiled type such as markdown 2015-12-14 21:04:27 -05:00
James Agnew 2eaa1eddae Fix compile 2015-12-14 18:22:21 -05:00
James Agnew 9ef0498775 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-12-14 10:56:33 -05:00
jamesagnew 97d6d09663 Work on #240 - Not yet working in JPA 2015-12-14 08:17:33 -05:00
James Agnew 68bb244328 Lots of work on new structures 2015-12-13 22:44:41 -05:00
James Agnew 117f9eb977 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-12-10 08:24:30 -05:00
James Agnew 85ec9d9264 Work on 2.1 structures 2015-12-10 08:24:12 -05:00
jamesagnew 0a0daedcfd Still not working DSTU2.1 2015-12-09 22:49:02 -05:00
jamesagnew 67eb06665e Work on test indexing 2015-12-03 22:41:37 -05:00
jamesagnew 8ed9ca83af Fix build 2015-12-03 21:52:40 -05:00
James Agnew 547b5290a4 Update resource defs 2015-12-01 18:35:24 -05:00
James Agnew 4398040451 Add count(int) method to fluent client search 2015-12-01 10:22:50 -05:00
jamesagnew 07078e4ce3 Add GZip support to client and server for client-to-server uploads 2015-11-29 15:03:28 -05:00
jamesagnew d47e0e5e77 Add DSTU2.1 resources 2015-11-29 11:43:09 -05:00
jamesagnew e6b47855e6 Merge branch 'master' of git://github.com/petervanhoute/hapi-fhir into petervanhoute-master 2015-11-27 14:59:53 -05:00
jamesagnew 00be143207 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-11-26 07:03:14 -05:00
James Agnew a046afe1d0 Merge pull request #259 from nrpeterson/boundcodeableconcept-serialization 
Add serializability for BoundCodeableConceptDt
 2015-11-26 06:59:14 -05:00
jamesagnew 14e326c2bd Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-11-26 06:57:08 -05:00
jamesagnew 9c9ffe1fb7 Remove dependency on JDK 7 2015-11-26 06:56:52 -05:00
James Agnew 1fe3bb9ff0 Updates from DevDays 2015-11-23 06:13:02 -05:00
Nick Peterson 13b3601843 Make IBoundCodeableConcept and IValueSetEnumBinder extend java.io.serializable; add a test to verify that MaritalStatusCodesEnum in DSTU2 is now serializable. 2015-11-20 12:15:31 -08:00
James Agnew c78be081ef Add CLI test 2015-11-20 10:30:10 +01:00
James Agnew 2f12c9ed01 Bump version to 1.4-SNAPSHOT 2015-11-15 20:11:05 -05:00
James Agnew f9f33f059b Version bump to 1.3 2015-11-15 12:53:02 -05:00
jamesagnew 6fd5aecec7 Fix #250 - Honour Accept: text/xml and Accept: text/json 2015-11-05 07:32:33 -05:00
jamesagnew 3fc7a16735 Fulltext searching works 2015-11-02 08:12:36 -05:00
petervanhoute 63db1b646f test in weblogic: fix interceptor + stateless on abstract 2015-10-30 11:35:11 +01:00
James Agnew 2cc88d76eb Cleasn up JPA interceptors 2015-10-29 16:44:51 -04:00
James Agnew d3685e72ba Fix #241 and fix #247 - Don't encode UUID IDs on resources, and preserve 
bundle type when retrieving pages
 2015-10-29 15:38:19 -04:00
petervanhoute 367163c46a fix return url 2015-10-29 15:55:37 +01:00
petervanhoute a262bf64d0 fix paging 2015-10-29 15:54:09 +01:00
jamesagnew 65598c200e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-10-28 07:39:18 -04:00
jamesagnew 5a2ee77142 Parser (XML and JSON) shouldn't encode an ID tag in resources 
which are part of a bundle when the resource has a UUID/OID
				            ID.
 2015-10-26 22:47:06 -04:00
jamesagnew 69658ab754 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-10-23 08:22:40 -04:00
jamesagnew eea406e10e ResourceReferenceDt#loadResource(IRestfulClient) did not 
use the client's read functionality, so it did not
				            handle JSON responses or use interceptors. Thanks to
								            JT for reporting!
 2015-10-23 08:21:25 -04:00
jamesagnew e93f7542a5 Remove unused check 2015-10-23 07:22:15 -04:00
James Agnew 8d515feb6d Fix #242 - Allow compartment and read method to coexist for server 2015-10-21 11:58:19 -04:00
James Agnew 5edd290013 More work on JPA server transactions 2015-10-20 10:52:29 -04:00
James Agnew ae416dcd62 Improve nexted search/read handing in transactions in JPA server 2015-10-20 10:35:18 -04:00
James Agnew 6729ea0479 Work on support for transaction searches with paging in JPA 2015-10-19 20:21:06 -04:00
James Agnew e9d18af5d9 Bump library versions 2015-10-14 18:11:52 -04:00
James Agnew 0430eb1626 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-10-13 12:13:43 -04:00
jamesagnew 6d93cbcaae Get content search working correctly 2015-10-13 09:18:34 -04:00
James Agnew a2bf374470 Merge pull request #239 from botunge/master 
Make dependencies truly optionel and clean up android pom.
 2015-10-12 20:06:24 -04:00
jamesagnew 81a90ecca8 Temporarily restore file 2015-10-12 20:05:21 -04:00