3818 Commits

Author SHA1 Message Date
Jimmy Deng
c913707599 added header check 2021-09-22 10:15:22 -04:00
juan.marchionatto
81a4f0c78f Rename method for clarity. Increase test coverage. 2021-09-22 09:40:25 -04:00
juan.marchionatto
fdf639d353 Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning 2021-09-22 09:25:48 -04:00
Justin Dar
ad5297b714 fix for issue #3014 2021-09-21 13:09:08 -07:00
Ken Stevens
060791aeb4
hapi-fhir-storage-api (#3006)
* rename hapi-fhir-jpaserver-migrate to hapi-fhir-sql-migrate and move hapi-tasks into jpaserver-persistence

* rename hapi-fhir-jpaserver-api to hapi-fhir-storage-api

* move bulk import apis

* create hapi-fhir-jpa

* create hapi-fhir-jpa

* move CircularQueueCaptureQueriesListener to japi-fhir-jpa

* move mdm logs to storage-api

* move gziputil to storage-api

* move quartz scheduling to hapi-fhir-jpa

* move default subscription channel factory to storage-api

* consolidated batch constants

* correct accidental Logs change

* remove dependency of cdr-api on cdr-persistence

* fix javadoc

* pom descriptions

* review feedback
2021-09-21 15:36:08 +00:00
juan.marchionatto
371484a4ea Fix test to add now required id to loinc CodeSystem creation 2021-09-20 17:19:31 -04:00
juan.marchionatto
3d5c863276 Revert creation of test utility class finally not needed 2021-09-20 17:18:45 -04:00
juan.marchionatto
9c790a7374 Revert creation of test utility class finally not needed 2021-09-20 17:18:11 -04:00
juan.marchionatto
8a1d95f348 Add service to get CodeSystem from its forcedId without forcing rollback by ResourceNotFoundException in case not found 2021-09-20 17:14:42 -04:00
Johnson Lu
f1f9c672ad
3110 zh disallow unknown extensions (#3009)
* Added allowKnownExtensionsOnly() method such which calls setAnyExtensionsAllowed() to set myAnyExtensionsAllowed to false and modified changelogs to add entry for this ticket.

* Modified docs to remove description for .allowAnyExtensions() and included it within a description for .allowKnownExtensionsOnly() and also added test for .allowKnownExtensionsOnly()

* refactored allowKnownExtensionsOnly() to rejectUnknownExtensions()
2021-09-20 15:40:56 -04:00
juan.marchionatto
1492b9220a Add test comment 2021-09-20 11:15:53 -04:00
juan.marchionatto
d706caf949 merge master in 2021-09-20 11:08:17 -04:00
juan.marchionatto
d372371f36 Make sure a loinc CodeSystem always has a ForcedId 2021-09-20 08:51:51 -04:00
Tadgh
3b1bf7aa09
Merge branch 'master' into 2849_add_new_mdm_param 2021-09-17 13:27:09 -04:00
Jaison B
8bb9aca8df Merge branch 'master' into 2849_add_new_mdm_param 2021-09-17 10:18:24 -06:00
jmarchionatto
115056800c
Merge branch 'master' into issue-2995-valuesetcomposeincludeversion-is-not-set-when-uploading-terminology 2021-09-17 11:32:18 -04:00
juan.marchionatto
18e3ed68eb Revert loinc.xml deletion until current work gets completed 2021-09-16 15:14:43 -04:00
juan.marchionatto
fbd23498fc Adjust test data and fix all test cases implemented so far 2021-09-16 13:41:05 -04:00
juan.marchionatto
c9162cba6d Merge in fix for ISSUE-2995 2021-09-16 13:20:00 -04:00
juan.marchionatto
0dfc716a82 Adjust code validation to properly obtain CodeSystem's current version 2021-09-16 13:18:49 -04:00
James Agnew
a56c85f780
Eliminate Search Coordinator ThreadPool (#2991)
* Add test

* Remove search coordinator thread pool

* Add changelog

* Add docs

* Test fixes

* Test fixes

* Test fixes

* Test fix
2021-09-16 16:37:34 +00:00
juan.marchionatto
3d3bab5102 merge master into branch 2021-09-16 11:02:17 -04:00
juan.marchionatto
16e329e40c Add version to ValueSet.compose.include when uploading terminology 2021-09-15 14:40:21 -04:00
Tadgh
724e4b37da Fix up test to actually match 2021-09-15 11:24:01 -04:00
Tadgh
171f0f8724 fix rulebuilder 2021-09-15 09:04:45 -04:00
Tadgh
a0c8cc4279 fix test 2021-09-15 01:23:43 -04:00
Tadgh
8f0e8b9e51 remove useless DB calls 2021-09-14 18:44:55 -04:00
Tadgh
9bb1558b71 Update query count ttest 2021-09-14 17:45:09 -04:00
Tadgh
bb5e04e706 Fix broken test 2021-09-14 17:22:25 -04:00
Tadgh
b25bdc1169 Remove crazy double encoding 2021-09-14 13:48:37 -04:00
Tadgh
9771210553 Prefer non-lazy outcomes in map 2021-09-14 13:40:53 -04:00
Tadgh
49debec36a Fix problem with null conditionals 2021-09-14 10:48:56 -04:00
juan.marchionatto
bd456dfff2 Enhance test by adding operations use cases. Improve test data with more version differentiators. 2021-09-14 10:00:15 -04:00
juan.marchionatto
8288d12e97 Obtain current CodeSystem from null-pointed ForcedId, as done for ValueSet 2021-09-14 09:58:32 -04:00
Tadgh
9d982c5e08
Merge branch 'master' into conditional-bug 2021-09-14 08:51:58 -04:00
Tadgh
1ca313f8ad lower logging 2021-09-13 21:27:05 -04:00
Tadgh
b4e2679872 Remove jetbrains 2021-09-13 21:15:23 -04:00
Tadgh
a0cd83398b Bump test java to 16 2021-09-13 20:52:14 -04:00
Tadgh
3ccadd636e
Merge branch 'master' into 2958-consistent-error-handling 2021-09-13 19:38:57 -04:00
Justin Dar
876768718d Remove log 2021-09-13 11:29:36 -07:00
Justin Dar
3ca73f1067 Merge remote-tracking branch 'origin/2958-consistent-error-handling' into 2958-consistent-error-handling 2021-09-13 11:26:39 -07:00
Justin Dar
46936e1704 Fixed code formatting and better way of fixing issue 2021-09-13 11:26:21 -07:00
Tadgh
5f86370c98 Merge branch 'master' into conditional-bug 2021-09-13 13:04:10 -04:00
Tadgh
59c8765e6a Add implementation to validate conditional URLs post-transaction 2021-09-13 13:03:44 -04:00
Ken Stevens
eee7d7e455
code cleanup (#2986)
* failed attempt to get it to work

* Use simplified FhirContext.forCached methods

* Update hapi-fhir-base/src/main/java/ca/uhn/fhir/context/FhirContext.java

Co-authored-by: James Agnew <jamesagnew@gmail.com>

Co-authored-by: James Agnew <jamesagnew@gmail.com>
2021-09-13 03:09:18 +00:00
James Agnew
5554431146
Avoid dead SearchParameter links in CapabilityStatement (#2790)
* Avoid dead SearchParameter links in CapabilityStatement

* Resolve fixmes

* Build fix

* Test fix

* Test fix

* Test fix

* Work on metadata

* Fixes

* Test fixes

* Test fix

* Test fix

* Test fixes

* Test fix

* Work on test fixes

* Test fixes

* Test fixes

* Test fixes

* Test fix

* Fix params

* Resolve fixme

* Adjust changelogs

* Version bump to 5.6.0-PRE7

* Add license header

* Bump version to 5.6.0-PRE5-SNAPSHOT
2021-09-11 18:27:18 -04:00
Tadgh
94f157a4ac Start refactoring of basetransactionprocessor 2021-09-11 15:13:05 -04:00
Tadgh
b224463d35 add broken test 2021-09-10 22:46:35 -04:00
jdar8
a02a9e0254
Merge branch 'master' into 2958-consistent-error-handling 2021-09-10 17:02:31 -07:00
Justin Dar
2163e6e548 Fixed error that previous fix caused 2021-09-10 12:36:11 -07:00