4cced40b54
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-05-05 17:19:32 -04:00
4db5beeabf
Additional changes to enable processing of lastn operations with large numbers of parameters.
2020-05-05 16:53:47 -04:00
a77aa6a28e
Multitenancy Ticket 2 - #1813 ( #1821 )
...
* Work on multitenancy
* Second ticket started
* More multitenancy work
* Work on tenancy security
* Work on multitenancy
* Test fixes
* Add docs
* cs tweak
* Multitenancy fixes
* Add debug log
* Fix build
* Add headers
* Add partition selection interceptor hook
* Update hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/api/Constants.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Account for review comments
* Resolve FIXMES
* Work on tests
* Test fixes
* A bit more cleanup
* Work on multitenancy
* Update hapi-fhir-docs/src/main/java/ca/uhn/hapi/fhir/docs/ClientExamples.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/client/examples.md
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Address review comments
* Allow disabling text modifier indexing
* Add changelog
* Docs fixes
* Address review comment
* Resolve merge conflicts
* Merge master
* Compile fix
* Test fix
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-05-05 15:12:15 -04:00
35c2b7a2c1
Allow disabling text modifier indexing ( #1831 )
...
* Allow disabling text modifier indexing
* Add changelog
* Address review comment
* Resolve merge conflicts
2020-05-05 12:16:55 -04:00
dada217966
Clean up hash code calculation ( #1830 )
...
* Clean up hash code calculation
* Test fixes
* Test fix
* Test fixes
* Compile fix
* Test fix
2020-05-05 11:11:24 -04:00
8f8a8a3dc2
Merge branch 'master' into date-match-bug
2020-04-29 16:17:50 -07:00
3e49e5615f
Fixing merge conflicts after merge from Master.
2020-04-25 22:14:55 -04:00
dd749791db
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-04-24 16:55:45 -04:00
0e45db0ba9
More cleanup and test fixes.
2020-04-24 16:23:59 -04:00
197bf2b6a8
Further refinements and test fixes.
2020-04-23 23:21:45 -04:00
c7de85339c
Work on review comments
2020-04-21 20:18:06 -04:00
bbab016ca6
Rename config
2020-04-20 12:38:04 -04:00
540375a7eb
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
2020-04-17 17:39:27 -04:00
25cdbb15c2
Work on multitenancy
2020-04-16 15:33:48 -04:00
cd06137745
Work on multitenancy
2020-04-15 22:12:28 -04:00
d822867a4a
Merge branch 'master' into ja_20200206_multitenancy
2020-04-15 22:12:20 -04:00
f95f619bdc
Correct two JPA processing bugs ( #1801 )
...
* Work on search params on contained
* Add workaround for stored decimals with leading decimal point
* Add changelog
* Cleanup
* Test fix
* Test fix
* One more test fix
2020-04-15 14:22:47 -04:00
925bbbbcdc
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-cli/hapi-fhir-cli-api/src/main/java/ca/uhn/fhir/cli/RunServerCommand.java
# hapi-fhir-cli/hapi-fhir-cli-jpaserver/src/main/java/ca/uhn/fhir/jpa/demo/CommonConfig.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/dstu3/BaseDstu3Config.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/r4/BaseR4Config.java
# hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/config/r5/BaseR5Config.java
# pom.xml
2020-04-13 18:35:15 -04:00
982b54df57
Work on multitenancy
2020-04-13 11:50:49 -04:00
c26a5553e9
Multitenancy work
2020-04-12 20:47:32 -04:00
e55ccf88fc
Work on multitenancy
2020-04-10 20:01:59 -04:00
7c6024fa14
More work on subscriptions
2020-04-03 07:43:21 -04:00
e1142f4043
Start work on subscription cleanup
2020-04-02 05:31:12 -04:00
f819c91530
Initial implementation of lastn operation.
2020-03-31 21:55:57 -04:00
a5257f0fa8
Add new indexing extractor method
2020-03-19 20:22:30 -04:00
3eb09b15f0
Merge branch 'master' into bugfix/1752-support-chained-parameters-inside-reverse-chained-parameter
2020-03-17 10:32:43 -07:00
22413911bf
Validation api changes ( #1719 )
...
* Validation enhancements
* Work on validation api reworking
* Keep working on validation API
* Keep working on new term API
* Work on validation api
* Ongoing work on validation
* Work on integrating validation
* Work on validation API
* Add to validation API
* Work on validation
* Work on API
* Work on validation
* Work on validation API
* Work on validation API
* Work on validation api
* Work on validation API
* Work on validation api
* Validation API changes
* Work on API
* More work on validationo API
* Work on validation API
* FIxes
* WOrk on validation api
* Work on validation API
* Tests passing!
* More cleanup
* More validation API changes
* Fix intermittent test failure
* Package reorg
* Validation API work
* Work on doocumentation
* Work on API
* More work on new validation API
* Fix errorprone-reported error
* Test fixes
* Documentation updates
* Documentation tweaks
* Work on API
* Bean name adjustments
* Build fixes
* Some test fixes
2020-03-17 13:28:59 -04:00
4777d75e6b
Merge branch 'master' into bugfix/1752-support-chained-parameters-inside-reverse-chained-parameter
2020-03-13 18:40:11 -07:00
1dc5d89013
Optmize forced ID resolution ( #1754 )
...
* Add forced ID caching
* Work on id optimization
* Test fixes
* More optimization work
* Add some docs
* Work on docs
* Test fixes
* Test fixes
* Test fixes
* Address review comments
* Compile fix
2020-03-12 17:12:50 -04:00
59d1603597
Some variable renaming. Adds some questions.
2020-03-09 13:51:47 -07:00
202b9c9a51
License header
2020-03-08 07:23:57 -04:00
aca4bcfaad
Minor refactoring for readability
2020-03-06 14:22:31 -08:00
ccd983ab42
review feedback: code improvement
2020-03-03 13:46:23 -05:00
705735b9c0
review feedback: javadoc
2020-03-03 13:29:10 -05:00
4e1be80525
fixme
2020-03-02 21:39:28 -05:00
27dcafe4f2
all but unit tests
2020-03-02 21:27:50 -05:00
24acb57f3b
began with failing test.
...
test now passes.
2020-03-02 17:56:25 -05:00
b1d7072c42
Add precision checker for ordinal date returning on DateRangeParam
2020-02-26 22:22:42 -05:00
f86a4c9fa1
Add date ordinals to subscription matching checker
2020-02-26 17:05:23 -05:00
cb9906580e
Index canonical references ( #1728 )
...
* Index canonical references
* Add changelog
* Fix compile error
* Add whitespace
2020-02-25 21:45:46 -05:00
a1b6e37395
Fix bug with Period bounds not counting as first value
2020-02-25 17:03:50 -05:00
3ec772b527
rework ResourceIndexedSearchParamDate constructor to support incoming string values
2020-02-25 14:06:36 -05:00
60f16dd91d
Update to 4.3.x core JAR ( #1715 )
...
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Start working on converter
* Account for compile errors
* Test fix
* Work no validator
* Work on getting core working
* Add some test coverage
* Many test fixes
Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
2020-02-17 14:28:29 -05:00
ddc7b601ee
Version bump to 4.3.0-SNAPSHOT
2020-02-16 19:23:22 -05:00
4fd80cfca7
Bump to 4.2.0
2020-02-16 19:00:15 -05:00
63f2f38689
reinstate near param count validation
2020-02-02 21:21:37 -05:00
c10d44327c
fix in-memory matcher
2020-02-02 17:52:09 -05:00
decb47dfc2
remove unused block
2020-02-02 16:56:25 -05:00
74948737a7
pre-review cleanup
2020-02-01 20:18:42 -05:00
fb1eb7ca8f
parking wip
2020-02-01 13:58:27 -05:00
2bc3181218
ensure in-memory matching location search for Dstu3 falls back to a db search
2020-01-25 13:30:26 -05:00
2c53468177
fix test
2020-01-24 21:11:37 -05:00
c87f8e0f4a
tested near anti-meridian
2020-01-24 18:55:32 -05:00
72ccd76ed0
prepping for antimeridian test
2020-01-24 14:37:28 -05:00
39c7642d8c
fix test
2020-01-24 09:27:20 -05:00
b465a7b781
final cleanup
2020-01-23 19:20:51 -05:00
01bc941f5f
Optimize imports
2020-01-23 19:15:30 -05:00
e6f5af01ed
convert degrees to kilometers for near calculation
2020-01-22 16:55:19 -05:00
9413e8f198
r4 works. But distance calculation still needs to be fixed.
2020-01-22 11:59:03 -05:00
6cebb56f13
testing complete. Now just need pre-review cleanup.
2020-01-21 17:06:19 -05:00
3cb9a9f4a2
added asserts
2020-01-21 15:45:41 -05:00
b463929c28
parse nearDistance into a special search parameter field so it's available when we're adding the near parameter
2020-01-21 15:38:25 -05:00
299e1e35e1
removed coordextractor and moved to token (looks cleaner and more in line with how the other ones are parsed)
2020-01-21 11:06:40 -05:00
dd137a0a30
Coord extraction implemented
2020-01-21 10:17:49 -05:00
c0e929dacb
Copy identifiers to placeholder resources ( #1675 )
...
* Copy identifiers to placeholder resources
* Add tests
* Maven cleanup
* Still messing around with azure
* Adding to logging
* More azure work
* One more attempt
* More messing around with azure
* Test fix
* Another caching attempt
* More work on azure pipeline
* Fix pipeline file
* Keep working on pipeline
* More work on azure
* More azure
* More azure work
* More azure
2020-01-21 06:09:06 +09:00
1390ea3c06
Update FHIR R5 structures to 4.2.0 version ( #1665 )
...
* Work on upgrading core
* Work on R5 updates
* Work on core updates
* Test fix
* Update model version properties file for R5
* Bump core version
* Test fixes
* Add 4.2.0-SNAPSHOT version to versions page in docs
2020-01-14 10:27:01 +08:00
9c7f5e1b9b
License header updates
2020-01-12 10:15:08 -05:00
2d0c30f7a2
fix test
2019-12-20 15:46:55 -05:00
625f967688
ready for review
2019-12-20 14:56:44 -05:00
0a21ab6941
Use datasource for migrator
2019-12-18 14:23:46 -05:00
993d8220d1
review feedback
2019-12-02 11:18:52 -05:00
f92c2bb5f9
ensure only one @PostConstruct method to make order explicit
2019-11-29 11:46:03 -05:00
37eef4e3e4
rename schedule interface methods
2019-11-29 11:04:35 -05:00
8c4ffc024d
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
2019-11-25 16:40:40 -05:00
27749f4e23
Support chained HAS ( #1605 )
2019-11-24 06:29:56 +01:00
51b608188b
Some CI surefire improvements ( #1602 )
...
* Some CI surefire improvements
* Build tweak
* More tweak
* Update azure-pipelines.yml for Azure Pipelines
* Update azure-pipelines.yml for Azure Pipelines
* One more CI attempt
* Update azure-pipelines.yml for Azure Pipelines
* Tweak command line
* Another build test fixc
* More build cleanup
2019-11-23 19:51:02 +01:00
a2f77b23d2
Fix #1583 - Index local refs in canonical types ( #1593 )
...
* Fix #1583 - Index local refs in canonical types
* Add fix to pre-expansion
* Test fix
* Rework ID handling
* Test fixes
* Fix test
2019-11-23 16:32:37 +01:00
6f9cd56c81
moved scheduler up to hapi-server
2019-11-20 14:30:24 -05:00
8fca468e1f
remove boolean from scheduling API
2019-11-19 10:13:22 -05:00
74159dcb26
Work on refactoring how PIDs work ( #1580 )
...
* Start work on refactoring how PIDs work
* Some test fixes
* Test fixes
* Test fixes
* Restore accidentally deleted line
* One more tweak
* Rework resource link extraction
* Test fix
* Split out transaction processor
* Updates
* Test fix
* Test fixes
* Test fixes
* Clean up LGTM warning
* Fix compile failure
* One more test fix
* Fix LGTM issue
* Add spot for metadata
* Add test logging
* Remove testing code
* More test logging
* Add some test logging
* Attempty to fix intermittent test failure
* Improve exception tracking
* Work on simplifying search param registry
* Fix compile
* Fix compile errors
* Fix two test bugs
2019-11-17 14:35:19 -05:00
f11d939131
oops
2019-11-14 14:55:02 -05:00
25c094e38a
skip trying to populate resources in search result bundle if no resources were found
2019-11-14 14:55:02 -05:00
497a96ae68
Version bump for next round of development
2019-11-12 22:09:21 -05:00
f99ad981b5
Version bump to 4.1.0
2019-11-12 16:08:20 -05:00
9c93d5d7f7
Test fixes
2019-11-04 07:04:26 -05:00
78a323f105
Test fixes
2019-11-03 21:20:22 -05:00
9672dac827
Fir build
2019-11-03 19:15:53 -05:00
f481e11ad5
Update migration tasks
2019-11-03 18:49:47 -05:00
c3c67966fd
Test fix
2019-11-03 14:37:14 -05:00
d937889878
Resolve startup issue
2019-11-03 14:08:59 -05:00
ac51098cb3
Version bump H2
2019-11-02 23:48:14 -04:00
b8837e810d
One more startup fix
2019-11-02 23:17:02 -04:00
49b8083e15
One more startup attempt
2019-11-02 22:48:56 -04:00
f8cbd27957
Fix startup issue
2019-11-02 22:45:13 -04:00
e96500d54f
Add a test
2019-10-30 15:51:46 -04:00
b13de41e9f
Merge branch 'ja_20190928_rationalize_search_param_extractor' of github.com:jamesagnew/hapi-fhir into ja_20190928_rationalize_search_param_extractor
2019-10-30 13:46:42 -04:00
090bb30c89
Test fix
2019-10-30 10:38:51 -04:00
d3e66680f0
Add some testing
2019-10-30 09:49:40 -04:00
16cfcc87c8
Work on extractor
2019-10-30 08:57:51 -04:00
541fbf3ec1
Work on tests
2019-10-30 05:32:30 -04:00
493ec707ca
A few more fixes
2019-10-28 17:00:23 -04:00
5954b131df
Work on tests
2019-10-27 21:58:04 -04:00
51a0006548
Work on rationalizing search param extractor
2019-10-27 20:04:33 -04:00
d18550b96f
Merge branch 'master' into ja_20190928_rationalize_search_param_extractor
2019-10-27 18:00:31 -04:00
817f9ae36e
Merge branch 'master' into ja_20190928_rationalize_search_param_extractor
2019-10-27 17:25:20 -04:00
6580c98ed7
Work on extractor
2019-10-26 16:56:12 -04:00
ffb15682de
Update license headers
2019-10-26 14:48:08 -04:00
4a2ed62357
review feedback
2019-10-24 20:25:16 -04:00
08472c1e3f
ready to merge
2019-10-24 17:56:15 -04:00
5379ab8c2c
implement in-memory match
2019-10-24 17:53:02 -04:00
4fa849a3e5
pre-review cleanup
2019-10-24 16:43:47 -04:00
43f17534bb
commiting with FIXMEs so James can review
2019-10-24 16:40:53 -04:00
74c03b5bb7
Add a test
2019-10-24 08:32:52 -04:00
2e7876b682
Merge remote-tracking branch 'remotes/origin/ks-binary-storage-NP-check' into ks-better-inmemory-error
2019-10-22 09:33:47 -04:00
73961072a6
Handle invalid chains on custom search params ( #1553 )
...
* Handle invalid chains on custom search params
* Add some more tests
* One more test fix
2019-10-21 21:21:33 -04:00
347a66c429
improve in-memory error messages
2019-10-21 16:44:52 -04:00
bfbc73caaf
Auto externalize binary contents ( #1550 )
...
* Auto externaliZe binary attachments
* Work on externalization
* Auto externalize binary content
* Work on tests
* Fix alert
2019-10-19 09:01:00 -04:00
9eddecaee7
Refactor indexed param creation to single method
2019-10-18 07:03:02 -04:00
efcde45bb7
Fix length for normalized value
2019-10-18 07:03:02 -04:00
12a74e6cbc
Fix term uploads and validate against valueset recalculation ( #1540 )
...
* Start refactoring terminology delta operations
* Work on delta operations
* Work on concept saving
* Split term services into smaller services
* Work on term delta operations
* Work on term svcs
* Work on term operations
* More work on delta uploader
* Add a test
* Wrk on term service
* Fix compile error
* Some refactoring
* Test fix
* Test fix
* Test fixes
* Test fix
* Test fixes
* Test fixes
* Work on delta
* Work on tests#
* Test fixes
* Improve resequencing logic
* Build test
* More testing
* More build testing
* More work on tests
* CHange test logging
* Fix term service PID issue
* Update src/changes/changes.xml
Co-Authored-By: Diederik Muylwyk <diederik.muylwyk@gmail.com>
* Address review comment
* Some cleanup
* Test fix
* Fix some tests
* Work on upload command
* Test fixes
* Work on validation fixes
* Work on validation against pre-expansion
* Work on direct validation
* A bit of cleanup
* Add some javadoc
* Force another build
* Test fixes
* Fix tests
* Fix tests
2019-10-15 21:31:29 -04:00
8b2ab51bc6
Handle canonical questionnaire refs in validator ( #1544 )
...
* Handle canonical questionnaire refs in validator
* FIx changelog
* Fix canonical reference
* Build tweak
* Change to trigger a build
2019-10-15 20:27:53 -04:00
1618ccc14c
FIx compile error
2019-10-15 20:06:11 -04:00
fdcf5f5d73
Add a test
2019-10-15 18:16:22 -04:00
836fac9a30
Ensure that JPA PRESHOW interceptor broadcasts don't include expunged
...
resources
2019-10-03 15:49:03 -04:00
98c76a4d49
Test passes
2019-10-03 12:03:38 -04:00
a1bf50685d
Work on cleanup
2019-09-30 21:40:41 -04:00
c0eb662a21
Rationalize search param extractor
2019-09-28 19:23:21 -04:00
8657afb01e
Fix intermittent test failures regarding search ( #1509 )
...
* Add some logging
* Add more test logging
* Work on some test logging
* Fix compile error
* Work on codecov
* Work on codecov
* Remove test debug messages
2019-09-25 20:15:21 -04:00
473fa3456e
Work on adding codecov
2019-09-25 14:12:42 -04:00
4a751cbfc5
Integrate Bulk Export ( #1487 )
...
* Start working on subscription processor
* Work on new scheduler
* Test fixes
* Scheduler refactoring
* Fix test failure
* One more test fix
* Updates to scheduler
* More scheduler work
* Tests now all passing
* Ongoing work on export
* Ongoing scheduler work
* Ongoing testing
* Work on export task
* Sync master
* Ongoing work
* Bump xml patch version
* Work on provider
* Work on bulk
* Work on export scheduler
* More test fies
* More test fixes
* Compile fix
* Reduce logging
* Improve logging
* Reuse bulk export jobs
* Export provider
* Improve logging in bulk export
* Work on bulk export service
* One more bugfix
* Ongoing work on Bulk Data
* Add changelog
2019-09-17 16:01:35 -04:00
c974e9283b
added search % now test
2019-09-10 10:11:09 -04:00
abef4455eb
done
2019-09-09 17:22:07 -04:00
7cfbf710fe
Merge remote-tracking branch 'remotes/origin/master' into ks-in-memory-date-compare
...
# Conflicts:
# src/changes/changes.xml
2019-09-09 14:46:25 -04:00
9e83f1d40a
changelog
2019-09-09 14:22:42 -04:00
cdbe527456
date comparison for in-memory matcher works now
2019-09-09 11:44:44 -04:00
02b8e14a7a
first part of test passes now
2019-09-07 10:24:18 -04:00
15098109c8
start with failing test
2019-09-06 18:33:33 -04:00
718fcb28a5
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-09-06 14:58:03 -04:00
722c7a8211
Work on GraphQL updates
2019-09-06 14:56:17 -04:00
fa62ab9c9e
Merge remote-tracking branch 'remotes/origin/master' into ja_20190822_1440_infinispan_query_cache
...
# Conflicts:
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
# src/changes/changes.xml
2019-09-04 13:31:00 -04:00
f59bdc4afe
Reuse FHIRPath across JPA requests
2019-08-29 14:13:31 -04:00
956bb39327
Resolve an inefficient regex expression
2019-08-29 13:59:31 -04:00
84836aed84
Fix accidental typo
2019-08-20 08:39:46 -04:00
ce879b3863
Fix versioned API incompatibility with GraphQL
2019-08-20 08:35:27 -04:00
54657214de
FIx issue uploading US Core resources
2019-08-17 18:11:52 -04:00
e1b43d811f
Version bump to 4.1.0-SNAPSHOT
2019-08-14 14:06:06 -04:00
3f22456b0f
Bump version to 4.0.0
2019-08-14 11:06:26 -04:00
6aa7916ba7
Merge pull request #1415 from jamesagnew/ks-inmemory-id-match
...
in-memory id match
2019-08-07 08:31:38 -04:00
60eab3ad70
Add support for R5 resources ( #1416 )
...
* Work so far on R5 support
* Add support for R5
* Docs changes
2019-08-06 17:30:31 -04:00
f9e86b5c83
revert public method
2019-08-06 15:38:23 -04:00
ianmarshall
James Agnew
Tadgh
Ken Stevens
Gary Graham
Tuomo Ala-Vannesluoma