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6955 Commits

Author SHA1 Message Date
ianmarshall 47244c54dc Merge remote-tracking branch 'origin/feature_2020_09_02_term_multi_version_support' into im_20200728_term_multi_version_support 
# Conflicts:
#	hapi-fhir-jpaserver-api/src/main/java/ca/uhn/fhir/jpa/api/dao/IFhirResourceDaoCodeSystem.java
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/BaseTermReadSvcImpl.java
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/loinc/BaseLoincHandler.java
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/loinc/LoincIeeeMedicalDeviceCodeHandler.java
#	hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
#	hapi-fhir-validation/src/main/java/org/hl7/fhir/common/hapi/validation/support/CommonCodeSystemsTerminologyService.java
 2020-09-25 09:10:07 -04:00
ianmarshall 6f9874468a Merge remote-tracking branch 'origin/master' into feature_2020_09_02_term_multi_version_support 2020-09-25 08:54:17 -04:00
ianmarshall 2bceacd9a6 Update loader to ensure that ConceptMap and ValueSet Ids are unique for each version loaded. 2020-09-25 08:51:53 -04:00
ianmarshall 5fe46be41c Validate code changes and new tests. 2020-09-24 18:51:47 -04:00
ianmarshall e5daea17b7 Additional cleanup and migration tasks. 2020-09-23 17:17:07 -04:00
ianmarshall dffc02a126 Missing fixes for DSTU3 and R5. 2020-09-23 16:51:18 -04:00
ianmarshall 640ee94c5c Merge remote-tracking branch 'origin/master' into im_20200728_term_multi_version_support 2020-09-23 16:43:22 -04:00
ianmarshall ceb5ec6384 Use canonical identifiers for code systems rather than specifying version separately. 2020-09-23 16:42:29 -04:00
Frank Tao 404abb2dcb
Merge pull request #2094 from jamesagnew/ft_2020_09_16_codesystem_validate 
Support CodeSystem/$validate-code for R4, R5
 2020-09-23 15:34:38 -04:00
Frank Tao 3d3d013d72 Changed import of IdType to r5. 2020-09-23 09:19:06 -04:00
Frank Tao e6a669444d Added invalid test cases for DSTU3 2020-09-22 20:51:20 -04:00
Frank Tao b6d86dc5f2 Added fail(); in the invalid test cases 2020-09-22 20:39:20 -04:00
Frank Tao 20661c7a2b Removed unused import 2020-09-22 20:19:43 -04:00
Frank Tao 673274a966 Added invalid test cases for CodeSystem/$validate-code R3 2020-09-22 20:18:18 -04:00
James Agnew ecc09889cb
Avoid duplicate search param defs in generated CapabilityStatement (#2101) 
* Avoid duplicate search param defs in generated CapabilityStatement

* Add changelog
 2020-09-22 19:21:34 -04:00
ianmarshall b32c4f01a8 Fixed lookupCode implementation in InMemoryTerminologyServerValidationSupport. 2020-09-22 18:46:16 -04:00
jamesagnew 8d9aa417e2 One more file rename 2020-09-22 17:13:06 -04:00
Tadgh 0e5020fa0a
If statement checking wrong attribute (#2098) 2020-09-22 15:12:54 -04:00
ianmarshall 4216cee8c6 Added and enhanced tests plus fixes arising from tests. 2020-09-22 14:44:32 -04:00
jamesagnew 3debef6cd4 Rename changelog 2020-09-22 12:39:05 -04:00
James Agnew ef4f3df945
Don't install draft package contents (#2099) 
* Don't install draft package contents

* Add changelog

* Add changelog
 2020-09-22 09:44:36 -04:00
James Agnew 072e63be5a
Avoid a crash on double date chains (#2097) 
* Avoid a crash on double date chains

* Add changelog

* Address coverage warning
 2020-09-21 15:43:07 -04:00
ianmarshall f9f8bf6515 Merge remote-tracking branch 'origin/master' into im_20200728_term_multi_version_support 2020-09-20 22:02:08 -04:00
ianmarshall 302bbca8fd Changes to support multi-versioning in ValueSet $expand operation. 2020-09-20 22:01:21 -04:00
Frank Tao 8f692a4776 CodeSystem/$validate-code not supported for DSTU2, DSTU3 2020-09-19 22:54:39 -04:00
Frank Tao a3a032584b Made Transactional 2020-09-19 15:18:28 -04:00
Frank Tao 01d88a665d Added CodeSystem/$validate-code for R5 2020-09-19 14:13:07 -04:00
Frank Tao 7db9f7475b Changed fetch size to 1 for CodeSystem $validate-code 2020-09-19 12:52:18 -04:00
Frank Tao 05de0c5031 Added more test cases for R4 2020-09-19 12:36:14 -04:00
Frank Tao 64f2bae2e7 Impl CodeSystem $validate-code for R4 with basic test cases 2020-09-18 22:30:59 -04:00
Tadgh 631556041c
Merge pull request #2076 from jamesagnew/2069-message-retry-attributes 
2069 message retry attributes
 2020-09-18 14:08:36 -04:00
Tadgh 45775c8660 Reuse constant 2020-09-16 15:29:04 -04:00
Tadgh ddfac72e8d Clean spacing 2020-09-16 15:27:03 -04:00
Tadgh 9d3a97a46f Default for int 2020-09-16 15:24:09 -04:00
Tadgh 558f7a5ccf Minor cleanup 2020-09-16 15:21:49 -04:00
Tadgh 4c5051a5d9 More refactor for custom headers and top level attributes 2020-09-16 15:05:44 -04:00
Ken Stevens 3189819dd5
limit transaction size config (#2087) 2020-09-16 14:13:03 -04:00
Tadgh 666113696b add attributes to HapiHeaders. Turns out deserialization makes a best guess, and doesnt respect types in Map<String,Object> 2020-09-16 14:06:54 -04:00
Tadgh cdc195bd0b Change to use long type for failure timestamps 2020-09-16 13:13:43 -04:00
jamesagnew b64e982ec3 Credit for #2083 2020-09-16 09:07:33 -04:00
Tue Toft Nørgård c884f29112
SearchCoordinatorSvcImpl gets ExecutorService from injected ThreadPoolTaskExecutor (#2083) 
* Get ExecutorService from injected ThreadPoolTaskExecutor which enables support of TaskDecorators (e.g. to add/clear ThreadLocal logging context (MDC) variables)

* Properly initialize ThreadPoolTaskExecutor
 2020-09-16 09:05:28 -04:00
dependabot[bot] 6ab7a0bcfe
Bump animal-sniffer-maven-plugin from 1.18 to 1.19 (#2084) 
Bumps [animal-sniffer-maven-plugin](https://github.com/mojohaus/animal-sniffer) from 1.18 to 1.19.
- [Release notes](https://github.com/mojohaus/animal-sniffer/releases)
- [Commits](https://github.com/mojohaus/animal-sniffer/compare/animal-sniffer-parent-1.18...animal-sniffer-parent-1.19)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2020-09-16 08:02:01 -04:00
ianmarshall 7f7e1f39bc Merge remote-tracking branch 'remotes/origin/im_20200728_term_multi_version_support' into feature_2020_09_02_term_multi_version_support 2020-09-15 22:06:43 -04:00
ianmarshall b2b63cbb02 Fixed JUnit tests. 2020-09-15 22:05:46 -04:00
Tadgh 74bba9dbcc Rename to ResourceOperationMessage 2020-09-15 18:57:55 -04:00
ianmarshall 3add1320b7 Merge remote-tracking branch 'remotes/origin/im_20200728_term_multi_version_support' into feature_2020_09_02_term_multi_version_support 2020-09-15 16:52:02 -04:00
ianmarshall ca0bdc8e4c Merge remote-tracking branch 'remotes/origin/master' into im_20200728_term_multi_version_support 2020-09-15 16:49:06 -04:00
ianmarshall 539ef63fc0 Merge branch 'im_20200728_term_multi_version_support' into feature_2020_09_02_term_multi_version_support 2020-09-15 16:24:47 -04:00
Tadgh 3ca1a42d37 Swap EMPI channel consumer to use Subscription ResourceModifiedMessages 2020-09-15 15:37:24 -04:00
Tadgh ea64bea1b0 Refactor to use concrete class instead of parent 2020-09-15 15:27:21 -04:00