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1007 Commits

Author SHA1 Message Date
James Agnew d29a9a7f96 AutohrizationInterceptor should correctly recognize type-level operation 
invocations
 2018-05-15 16:14:10 -04:00
James Agnew a3ff08d9ec
Replace phloc with ph for #775 (#930) 
* Replace phloc with ph

* Enable schematron tests

* Make HAPI-FHIR ph-schematron on OSGI

* Work on getting tests passing

* Another test fix

* Fix up transaction handling for DSTU2

* Add changelog

* Avoid double transaction

* Dont use readonly

* One more test fix

* Update to snapshow build

* Resolve a circular dependency

* Try to fix tests

* Solve recurring NPE in DSTU2 tests

* Fix one more test

* Test fix

* More test threading fixes

* One more attempt to get tests passing

* Refactoring for tests

* Refactoring for tests
 2018-05-14 17:38:40 -04:00
jamesagnew 23a01b5f18 Add to download page 2018-05-12 19:40:39 -04:00
jamesagnew 150f27a9ca Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-05-12 19:40:31 -04:00
jamesagnew 3d762b984b Sync to R4 definitions 2018-05-12 19:35:42 -04:00
James Agnew 9d24e8b040 Use HTTP 409 for conflict when two threds update the same resource 2018-05-11 17:41:07 -04:00
James Agnew f1ba0016b2 Improve the error message thrown by JPA server 2018-05-11 17:03:48 -04:00
James Agnew b17eebd8d2 Squashed commit of the following: 
commit 2be11651c2
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:50:53 2018 -0400

    Update changelog

commit b3bb5f9052
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 11:19:28 2018 -0400

    Parameter updates

commit f6b1082ba4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 07:24:30 2018 -0400

    More test fixes

commit 81a69c265f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:26:48 2018 -0400

    Fix compile error

commit 935938e92c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:25:18 2018 -0400

    Another test fix

commit 43568a1f8d
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:18:06 2018 -0400

    Fix compile error

commit e95894e643
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 06:13:50 2018 -0400

    More work on tests

commit 9393fb8f4f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu May 10 05:36:27 2018 -0400

    One more fix

commit 437f5051e4
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 21:32:10 2018 -0400

    Work on validator

commit 20c51add4f
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 19:34:10 2018 -0400

    Validator fix

commit 7bf2b0a0e9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 18:44:04 2018 -0400

    Fix test

commit adc73e75c9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed May 9 17:22:34 2018 -0400

    Merge validator
 2018-05-10 11:53:32 -04:00
Diederik Muylwyk 14a070a47e
927 cli tooling is needed for creating and maintaining conceptmaps using csvs (#934) 
CLI tooling for import/export of ConceptMaps using CSVs has been implemented.
 2018-05-10 11:12:45 -04:00
Diederik Muylwyk d97fb8f5cf
709 the conceptmap operation called translate needs to be implemented (#923) 
The ConceptMap operation $translate has been implemented.
 2018-05-10 10:52:56 -04:00
James Agnew 127a8389ac Credit for #903 2018-05-04 08:55:41 -04:00
jamesagnew 1522974a56 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-04-28 11:44:36 -04:00
jamesagnew 83a5eedb29 Fix performance regression in DSTU3 validation 2018-04-28 11:42:59 -04:00
James Agnew 593a705365 Performance enhancements on the CapabilityStatement generator for JPA 
server
 2018-04-28 11:06:42 -04:00
James Agnew 09b1f547d0 Add expunge 2018-04-24 15:11:00 -04:00
James Agnew a21d0a7752 Add auth tester methods 2018-04-22 19:30:09 -04:00
James Agnew 591539cf13 Add expunge method 2018-04-22 18:34:56 -04:00
James Agnew 1ff50cb0db Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-04-17 18:26:39 -04:00
James Agnew 162069776a Correctly handle encoding contained resources where some have user 
assigned IDs and some do not
 2018-04-17 18:26:06 -04:00
Patrick Werner 4599c525a8
Fixed header nocache -> no-cache 2018-04-17 11:01:28 +02:00
James Agnew d624556e18 Some updates to the loinc mapper 2018-04-06 09:50:18 -04:00
James Agnew 832558b411 Updates to handler 2018-04-06 09:12:52 -04:00
James Agnew e31e1c029d Merge branch 'loinc_loader_update' of github.com:jamesagnew/hapi-fhir into loinc_loader_update 2018-04-02 09:13:27 -04:00
James Agnew fe25d93fe6 Sync with master 2018-04-02 09:08:11 -04:00
jamesagnew 4c0d5b49d9 Site updates 2018-03-30 08:28:10 -04:00
James Agnew d9c167455e Make sure we correctly clean up resources 2018-03-27 15:20:22 -04:00
jamesagnew fa28d505f3 Credit for #871 2018-03-27 06:14:05 -04:00
jamesagnew ca3e7fe38f Credit for #877 2018-03-26 08:43:28 -04:00
jamesagnew a3a15ac9d8 Add test and credit for #819 2018-03-24 06:45:41 -04:00
James Agnew 6ba6f301e4
Merge pull request #840 from jamesdaily/patch-2 
Conformance Statement -> Capability Statement
 2018-03-23 07:23:54 -04:00
jamesagnew d5a1c089b8 Credit for #864 2018-03-23 06:50:10 -04:00
jamesagnew 352a9b8593 Credit for #581 2018-03-23 06:37:48 -04:00
jamesagnew 37f12ac28b Credit for #817 2018-03-23 06:35:53 -04:00
jamesagnew 1ba00f6b11 Credit for #879 2018-03-22 06:52:30 -04:00
jamesagnew 1689dc889e Make server operation interceptor not perform superfluous calls for 
conditional and no-op operations
 2018-03-22 06:52:30 -04:00
jamesagnew 42498f3f87 Credit for #812 2018-03-19 06:25:49 -04:00
jamesagnew 30c32cdc89 Credit for #806 2018-03-19 06:16:29 -04:00
jamesagnew 78a69f654b Credit for #800 2018-03-19 05:43:25 -04:00
jamesagnew 83b1cf5b9f Add credit for #798 and fix broken test 2018-03-15 07:30:32 -04:00
jamesagnew 8c47e2f7be Credit for #791 2018-03-15 06:48:41 -04:00
jamesagnew 49192e5e48 Credit for #776 2018-03-12 06:42:22 -04:00
jamesagnew ea0b8992f4 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-12 06:31:56 -04:00
jamesagnew e75336f751 Credit for #786 2018-03-12 06:31:39 -04:00
Patrick Werner 1d92160822
Merge pull request #855 from patrick-werner/patch-2 
fixed package name hapi-fhir-validation on the http://hapifhir.io/download.html page.
 2018-03-12 05:59:27 -03:00
jamesagnew d22670ddb5 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-04 12:21:07 -05:00
James Agnew 2f7751a079 Move stopwatch into hapi-fhir-base and add timing into to client 
LoggingInterceptor
 2018-03-04 12:13:18 -05:00
jamesagnew 8bdca012d6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-03-04 11:04:07 -05:00
jamesagnew 07290ae8a0 Sync to latest R4 code 2018-03-04 11:02:47 -05:00
James Agnew 0c0b9bd74b Fix #814 - Don't create duplicate contained resources 2018-03-02 09:46:29 -05:00
James Agnew 0c52c38eda Add credit for #868 2018-03-02 08:57:40 -05:00
James Agnew a18303f117 Fix #872 - Include resource type in JPA uri search parameter criterias 2018-03-01 08:31:41 -05:00
James Agnew 84c72203b7 Add HashMapResourcePrvider 2018-02-25 13:16:02 -05:00
James Agnew 136455f312 Fix #863 - Allow custom search parameters to use multiple bases 2018-02-24 22:10:55 -05:00
James Agnew 6e47951220 Remove unneccesary log lines and clean up some documentation 2018-02-24 10:57:32 -05:00
James Agnew 3b2930f8e9 Prevent a crash in testpage overlay when deleting a resource 2018-02-23 15:24:20 -05:00
jamesagnew 72cf22e3a9 Fix #854 - Process ID substitutions on URIs for JPA 2018-02-20 07:32:49 -05:00
Patrick Werner e842881aa7
fixed package name haps-fhir-validation 
was hapi-fhir-validator, corrected to hapi-fhir-validation
closes #766
 2018-02-20 11:59:23 +01:00
James Agnew d18a0ea32f Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-18 10:27:45 -05:00
jamesagnew 3f1a0e81c7 Avoid endless reindex loop 2018-02-17 16:10:44 -05:00
James Agnew 222636baca Docs updates 2018-02-17 14:32:42 -05:00
jamesagnew e89f8e5ba4 Fix crash with unique search parameter updates in JPA 2018-02-16 07:39:46 -05:00
James Agnew e6253b7f22 Refresh search parameter cache asynchronously 2018-02-14 11:10:30 -05:00
James Agnew 80353e5d42 Better handle large search result deletion in JPA 2018-02-08 17:55:46 -05:00
jamesagnew b8c01a471a Correctly credit John Grimes for #838 (oops!!!) 2018-02-03 19:21:55 -05:00
James Agnew 17b1ff727e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-03 15:48:09 -05:00
James Agnew 3cbf669007 Don't crash on startup if an invalid subscription is in the database 2018-02-03 15:47:48 -05:00
jamesagnew 371be03b0f Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-02-02 13:20:09 -05:00
James Agnew 0e2d55081f Fix a crash when no count parameter supplied 2018-02-02 12:31:59 -05:00
jamesagnew 351a2fc2f1 Fix #837 - Use non-legacy content-type for plain json and xml accept 
header
 2018-02-02 06:43:19 -05:00
James Agnew 4af52c160f Try to get HAPI building on JDK9 2018-01-31 06:41:24 -06:00
James Agnew 1c5a07b5a0 Fix #822 - Respect chained method params in a transaction search 2018-01-30 16:20:25 -06:00
James Agnew 8d468de551 Use R4 validator for DSTU3 validation 2018-01-30 11:16:04 -06:00
James Agnew e52f582769 An experimental interceptor called VersionedApiConverterInterceptor has been added, which automaticaly converts response payloads to a client-specified version according to transforms built into FHIR. 2018-01-29 12:10:05 -06:00
James Agnew a89c8d50c5 Fix #838 - Include JAXB dependencies explicitly 2018-01-29 12:05:37 -06:00
James Daily 8e3e693d29
Conformance Statement -> Capability Statement 
Removed broken link to old conformance.html with link to capabilitysatement.html. Hope this is true that HAPI exports a capability statement now as of STU3?

Note - there are still references to Conformance Statement elsewhere within the documentation (such as doc_rest_operations.xml), but they contained coding / server behavior assertions that I was not comfortable modifying.
 2018-01-29 10:37:04 -05:00
James Agnew 044b9f584a Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-01-28 14:02:53 -06:00
James Agnew f976b7bf7e Add new interceptor method which enabled interceptors to modify response 2018-01-28 14:01:20 -06:00
jamesagnew 2e4f80d7a3 Fix #831 - Remove useless TagListParam annotation 2018-01-26 10:03:21 -05:00
jamesagnew 5750cfd03c Prevent double calling server interceptor methods under certain 
conditions
 2018-01-26 07:44:13 -05:00
jamesagnew 4e0e8fb8f8 Version bump a few dependencies 2018-01-26 06:22:06 -05:00
James Agnew 16038ece26 Version bump to 3.3.0-SNAPSHOT 2018-01-23 10:31:01 -05:00
James Agnew 4fd3e20d06 Remove duplicate resource body creation (Merge branch 'optimize_jpa') 2018-01-21 18:16:11 +08:00
James Agnew 4dcce4e582 Fix #832 - Correctly normalize text with Korean characters 2018-01-21 14:55:14 +08:00
James Agnew 3644151a69 Fix crash in JSON parser when parsing extensions on primitive elements 2018-01-18 09:07:23 +07:00
jamesagnew 2c65f1c81b Fix error on docs 2018-01-13 05:42:27 -05:00
James Agnew 6468ca474a Verion bump to 3.2.0 2018-01-13 02:14:33 -05:00
James Agnew 01186ec8cb Squashed commit of the following: 
commit ab876ef864005b6758d3e00a1bb1ef2dad5d2161
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Jan 12 18:59:15 2018 -0500

    Tests all passing

commit 4f8a5d98307da1bb5ca7602e34b1d3b791f73d25
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Fri Jan 12 08:21:58 2018 -0500

    Almost compiling
 2018-01-12 18:59:43 -05:00
James Agnew f6c9e3d0fe Add multitenancy support for server 2018-01-11 11:14:54 -05:00
jamesagnew b0e196e5cf Merge branch 'master' into optimize_jpa 2018-01-10 06:27:15 -05:00
James Agnew 9a72927dbc Fix #808 - Use version from meta if not found in the resource ID 2018-01-08 14:07:27 -05:00
jamesagnew 6fc88caa51 More work on optimizing JPA 2018-01-08 07:15:58 -05:00
James Agnew 377bae8c16 Allow interceptors to modify request contents 2018-01-06 14:27:32 -05:00
James Agnew 2f5ce64755 Start work on removing duplicate resource body 2018-01-04 14:45:17 -05:00
James Agnew b18e71d4f5 Added new callbacks to IServerOperationInterceptor to be invoked before 
other operation methods
 2017-12-23 17:13:33 -05:00
James Agnew 64ba145d93 Credit for #810 2017-12-22 16:10:05 -05:00
James Agnew 0997167d50 Add test cases for DSTU2 custom search params 2017-12-12 22:08:02 -05:00
James Agnew 6c85cd1375 Improve documentation and mark redundant methods as deprecated in 
IServerInterceptor
 2017-12-12 21:45:54 -05:00
James Agnew c86a2866d8 Reduce search log noise 2017-12-08 14:25:47 -05:00
James Agnew e838b0e32d Remove unneccesary column 2017-12-07 18:17:24 -06:00
James Agnew 36e719f92f Allow server assigned UUIDs instead of sequential IDs if conigured to do 
so
 2017-12-06 23:16:10 -06:00