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6494 Commits

Author SHA1 Message Date
IanMMarshall 4f45c2c25d
Merge pull request #1920 from jamesagnew/im_20200611_mysql_rename 
Enable rename table column migration task for MySQL.
 2020-06-12 13:04:54 -04:00
ianmarshall 1ed65f2e03 Enable rename table column migration task for MySQL. 2020-06-12 09:01:46 -04:00
jamesagnew 756602183b Add changelog for https://github.com/hapifhir/org.hl7.fhir.core/pull/237 2020-06-11 14:03:20 -04:00
jamesagnew d521dc61cc Package fix 2020-06-10 11:59:37 -04:00
jamesagnew 7d6f8fe612 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2020-06-10 09:57:24 -04:00
jamesagnew 05df4f0827 Migration task updates 2020-06-10 09:56:49 -04:00
jamesagnew 0c100f1aca Test fixes 2020-06-10 08:09:10 -04:00
James Agnew b8da4f0140
Add package support (#1911) 
* Begin rework of package management

* Work on NPM

* Work on package management

* Work on NPM

* NPM rework

* Work on NPM

* NPM package rework

* Updates

* Updates

* Add license

* Work on package server

* Work on package importing

* Work on package management

* Package rework

* Work on packages

* Work on package manager

* Work on pkgs

* NPM work

* NPM rework

* Work on package cache

* Work on NPM

* Work on NPM

* Package fixes

* Add tests

* Tweaks

* Test fixes

* Add changelog

* Avoid snapshot dep
 2020-06-10 05:30:20 -04:00
James Agnew 0d3ad622b5
Correct Validation Performance Regression (#1895) 
* Validation performance regression

* Optimize validation

* More cleanup

* Add changelog

* Test fixes

* Build fixes
 2020-06-10 05:26:21 -04:00
IanMMarshall 926afd01f2
Merge pull request #1910 from jamesagnew/im_20200605_db_blob_mssql 
Im 20200605 db blob mssql
 2020-06-09 13:48:53 -04:00
ianmarshall 0540c9e205 Merge remote-tracking branch 'remotes/origin/master' into im_20200605_db_blob_mssql 2020-06-09 12:43:05 -04:00
IanMMarshall 3b14407ef7
Merge pull request #1905 from jamesagnew/im_2020601_lastn_code_text_filter 
Im 2020601 lastn code text filter
 2020-06-09 12:38:28 -04:00
ianmarshall 97e6d967e9 Improve updated JUnit test. 2020-06-09 11:52:51 -04:00
ianmarshall 1ec6a7edb6 Merge remote-tracking branch 'remotes/origin/master' into im_2020601_lastn_code_text_filter 2020-06-09 11:45:04 -04:00
ianmarshall 4bf649c09c Merge remote-tracking branch 'remotes/origin/master' into im_20200605_db_blob_mssql 2020-06-09 11:41:05 -04:00
Ken Stevens d6a5cee6ba
fix test (#1909) 2020-06-09 11:38:39 -04:00
ianmarshall 64aa0feb5d Fix for issue of persisting blob data types to MS SQL databases. 2020-06-09 11:06:01 -04:00
ianmarshall 122bd97344 Changes recommended during code review. 2020-06-09 09:59:03 -04:00
Ken Stevens 82b4864d79
Empi 57 filter out inactive person (#1903) 
* begin with failing test

* test passes

* pre-review cleanup

* little fix

* fix intermittent
 2020-06-09 09:52:40 -04:00
ianmarshall 3c600e06d4 Merge remote-tracking branch 'remotes/origin/master' into im_2020601_lastn_code_text_filter 2020-06-08 18:08:55 -04:00
ianmarshall c86e46b196 Add documentation and remove requirement for max parameter (defaulted to 1 now). 2020-06-08 18:08:02 -04:00
ianmarshall 30dd858f17 Add close method for Elasticsearch service. Fix the partial code match. 2020-06-08 15:07:02 -04:00
Diederik Muylwyk 954730d485
Merge pull request #1904 from jamesagnew/dm-fix-typo 
Fixed a typo in ParametersUtil.
 2020-06-08 13:55:28 -04:00
Diederik Muylwyk eda806babd Fix typo. 2020-06-08 13:48:44 -04:00
ianmarshall 4982e67a0f Merge remote-tracking branch 'remotes/origin/master' into im_2020601_lastn_code_text_filter 2020-06-08 09:26:55 -04:00
ianmarshall 56cbc5149b Add support for partial code description matching. 2020-06-08 09:24:09 -04:00
Ken Stevens dd84846b94
Empi 56 link merged person (#1902) 2020-06-05 15:50:50 -04:00
Ken Stevens 558f419955
Empi 54 not duplicate (#1900) 
add operation to unduplicate persons
 2020-06-05 12:21:09 -04:00
jamesagnew 5483c99e00 License header updates 2020-06-05 05:47:20 -04:00
James Agnew 21330a0a22
Transaction create performance improvement (#1899) 
* Work on perf issue

* Improve write performance for large bundles with tags

* Add changelog

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_1_0/1899-improve-write-xact-perf-with-tags.yaml

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/MemoryCacheService.java

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>

* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/MemoryCacheService.java

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>

* Test fix

* Test fixes

* Test fixes

Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
 2020-06-05 05:26:06 -04:00
ianmarshall 549993886d Fix merge conflicts. 2020-06-04 17:57:38 -04:00
ianmarshall 78b7f091ec Merge remote-tracking branch 'remotes/origin/master' into im_2020601_lastn_code_text_filter 
# Conflicts:
#	hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/search/lastn/LastNElasticsearchSvcMultipleObservationsIT.java
 2020-06-04 16:55:18 -04:00
Ken Stevens eb7b8e816b
Empi 58 no match create person (#1898) 2020-06-04 16:07:50 -04:00
IanMMarshall c91e7b8b41
Merge pull request #1897 from jamesagnew/im_20200604_remove_observation_index_tables 
Im 20200604 remove observation index tables
 2020-06-04 15:29:49 -04:00
ianmarshall 0a2f9d2697 Changes per code review plus fix for possible intermittent JUnit failures. 2020-06-04 15:24:41 -04:00
ianmarshall 9696af5dc0 Changed observation indexing to bypass hibernate search and removed Observation index tables. 2020-06-04 13:20:42 -04:00
ianmarshall 6e507bf642 Changed observation indexing to bypass hibernate search and removed Observation indexing tables. 2020-06-04 13:10:06 -04:00
Ken Stevens 60e420aaa3
resolves #1838 (#1839) 
* Added %today that works like %now but with date precision instead of dateTime precision.
 2020-06-04 09:52:41 -04:00
Ken Stevens 9136231b3b
Empi 62 resource history (#1894) 2020-06-03 18:00:20 -04:00
jamesagnew d2f018919c Add test 2020-06-03 15:16:38 -04:00
Ken Stevens 33753881e2
Empi 55 deactivate merged (#1883) 2020-06-03 13:12:01 -04:00
James Agnew 86ef0ec0e2
Correct transaction processing in multitenant server (#1884) 
* Correct transaction processing in multitenant server

* # d codethe npm registry for updates every day (weekdays)
 2020-06-03 10:37:47 -04:00
ianmarshall 8d5232bced Merge remote-tracking branch 'remotes/origin/master' into im_2020601_lastn_code_text_filter 2020-06-02 21:28:10 -04:00
jamesagnew 0487727fb1 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2020-06-02 18:21:12 -04:00
jamesagnew 75a74bdd38 License headers 2020-06-02 18:20:56 -04:00
ianmarshall 3f50d8e53d Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir 2020-06-02 16:41:10 -04:00
ianmarshall bfc5f93ec8 Enable filtering $lastn operation by Observation effective date. 2020-06-02 16:39:06 -04:00
ianmarshall 2e709a50c0 Enable filtering $lastn operation by Observation effective date. 2020-06-02 16:37:07 -04:00
Ken Stevens 61f1b57b2a
Empi merge persons fixes (#1882) 2020-06-02 12:41:26 -04:00
jamesagnew 201c3a6187 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2020-06-02 07:47:06 -04:00