5230 Commits

Author SHA1 Message Date
David Maplesden
5120fe795e Dramatically improve the performance of containResourcesForEncoding
We do this by avoiding the double processing of contained resources when
looking for resources to contain
2019-09-19 20:38:30 -04:00
jamesagnew
6475146bc9 Add license headers 2019-09-19 18:08:21 -04:00
James Agnew
eddb98084d Move PreferReturnEnum back to original location to avoid regressions 2019-09-19 15:48:58 -04:00
James Agnew
6fde2879ef Fix one more intermittent test 2019-09-19 14:53:29 -04:00
James Agnew
47805bceff Test fixes 2019-09-19 14:42:27 -04:00
James Agnew
a5a0fca065 Test fixes 2019-09-19 11:33:33 -04:00
James Agnew
4115a4bb6d Compile fixes 2019-09-19 10:10:47 -04:00
James Agnew
2be63a1650 Test fixes 2019-09-19 09:45:07 -04:00
jamesagnew
170698562a Bump to current org.hl7.fhir.core 2019-09-19 08:11:30 -04:00
James Agnew
30dfde645b Upgrade to Fontawesdome 5 and prevent uploading resources with binary
storage extensions
2019-09-19 05:28:05 -04:00
James Agnew
6b21e8cd90 Add some testing to the bulk export service 2019-09-18 14:43:00 -04:00
James Agnew
5e74a6f3e8 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-17 16:01:53 -04:00
James Agnew
4a751cbfc5
Integrate Bulk Export (#1487)
* Start working on subscription processor

* Work on new scheduler

* Test fixes

* Scheduler refactoring

* Fix test failure

* One more test fix

* Updates to scheduler

* More scheduler work

* Tests now all passing

* Ongoing work on export

* Ongoing scheduler work

* Ongoing testing

* Work on export task

* Sync master

* Ongoing work

* Bump xml patch version

* Work on provider

* Work on bulk

* Work on export scheduler

* More test fies

* More test fixes

* Compile fix

* Reduce logging

* Improve logging

* Reuse bulk export jobs

* Export provider

* Improve logging in bulk export

* Work on bulk export service

* One more bugfix

* Ongoing work on Bulk Data

* Add changelog
2019-09-17 16:01:35 -04:00
James Agnew
d3c8962ae6 Add some tests 2019-09-17 14:04:35 -04:00
James Agnew
2cfa08f179 Add test case 2019-09-17 11:13:57 -04:00
James Agnew
882e0853df Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-16 15:55:49 -04:00
James Agnew
38cf830384 Accurately reflect codesystem URL 2019-09-16 15:55:32 -04:00
Diederik Muylwyk
1704d3d083
Merge pull request #1485 from jamesagnew/dm-additional-enhancements-for-loinc-terminology
Resolve "Additional Enhancements for LOINC terminology"
2019-09-16 12:00:35 -04:00
Diederik Muylwyk
3a9342913c Address review comments. Added tests. 2019-09-16 11:54:34 -04:00
Diederik Muylwyk
b05c5f3f71 Implement the parent and child filters for LOINC. #1453 2019-09-15 21:52:33 -04:00
James Agnew
9997b02506 Add support for R5 in the terstpage overlay 2019-09-14 11:51:09 -04:00
Diederik Muylwyk
9b1af6b207 Implement both a copyright property and a copyright filter for LOINC. #1451 2019-09-13 16:18:51 -04:00
Diederik Muylwyk
678d58ab90 Only manually add EXTERNAL_COPYRIGHT_NOTICE to LOINC uploader if it doesn't already exist in loinc.xml 2019-09-13 11:57:19 -04:00
Diederik Muylwyk
75ddba7f2d Add EXTERNAL_COPYRIGHT_NOTICE property for LOINC uploader. 2019-09-13 11:49:01 -04:00
James Agnew
08835c1615 FIx a failure in FhirTerser when visiting custom types 2019-09-13 09:11:47 -04:00
James Agnew
0831feb2c3 Bump xml patch version 2019-09-11 17:33:31 -04:00
jamesagnew
cfdb3b222e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-11 08:29:13 -04:00
Diederik Muylwyk
7dce29b86e
Merge pull request #1468 from jamesagnew/dm-more-performance-tuning-on-valueset-expansion
More performance tuning on ValueSet expansion.
2019-09-10 17:57:13 -04:00
Diederik Muylwyk
65e029458c Test fixes. 2019-09-10 17:50:49 -04:00
Diederik Muylwyk
d4feb5d0b1 Final cleanup before review. 2019-09-10 14:21:42 -04:00
jamesagnew
ea49692106 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-10 13:45:49 -04:00
jamesagnew
c7ec9601fd Bump core version 2019-09-10 13:32:59 -04:00
James Agnew
5020cef56b
Merge pull request #1480 from jamesagnew/ks-in-memory-date-compare
%now and in-memory date compare
2019-09-10 13:25:51 -04:00
James Agnew
9420bca341
Merge branch 'master' into ks-in-memory-date-compare 2019-09-10 13:25:29 -04:00
Diederik Muylwyk
57d4cc23ee More bug-hunting. DSTU3 was missing a null check. 2019-09-10 11:56:07 -04:00
James Agnew
0843a2b02d Avoid leaking details when canSeeReource rejects a resource from consent
service
2019-09-10 11:14:44 -04:00
Ken Stevens
c974e9283b added search % now test 2019-09-10 10:11:09 -04:00
Diederik Muylwyk
67d24eedff Merging master into working branch.
# Conflicts:
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/TermValueSetConceptDesignation.java
#	hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
2019-09-09 19:01:29 -04:00
Diederik Muylwyk
dbe5a36f26 Reset schedule for pre-expansions. Ready for review. 2019-09-09 18:44:25 -04:00
Diederik Muylwyk
7e76c1893f Fixed bug for large ValueSet expansion with URL parameter; return 404 for unknown ValueSets. 2019-09-09 18:41:00 -04:00
James Agnew
2052df3152 Error with a 404 on invalid valueset 2019-09-09 18:01:41 -04:00
Ken Stevens
42a9672cc2 fix test 2019-09-09 17:36:57 -04:00
Diederik Muylwyk
19676a01b7 Incremental progress on large ValueSet expansion with URL parameter. 2019-09-09 17:24:01 -04:00
Ken Stevens
de7e2a0a93 GraphQL Imports 2019-09-09 17:23:03 -04:00
Ken Stevens
abef4455eb done 2019-09-09 17:22:07 -04:00
Ken Stevens
98ed9b8cbb Merge remote-tracking branch 'remotes/origin/master' into ks-in-memory-date-compare 2019-09-09 15:24:55 -04:00
Diederik Muylwyk
c82c3a093f Removing gaps from concept order when pre-expanding ValueSets. 2019-09-09 15:24:37 -04:00
jamesagnew
95e75d0a7d Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-09 15:02:55 -04:00
James Agnew
7e41951508 Create utility method for accessing the reqyest detail 2019-09-09 15:02:12 -04:00
Ken Stevens
7cfbf710fe Merge remote-tracking branch 'remotes/origin/master' into ks-in-memory-date-compare
# Conflicts:
#	src/changes/changes.xml
2019-09-09 14:46:25 -04:00