* 2991 - WIP, starting to implement test to reproduce the issue.
* Adding capability to extract url & version from the valueSet.include.url
* parsing codeSystem canonical URL to extra version if required.
* WIP
* Cleaning up the test.
* Replacing hard code value with variable.
* Removing non required test.
* Modifications following first code review.
* Further modifications following first code review.
* Refining the test for better code coverage.
* Prefixing the change log file name with the hapi-fhir issue number.
Co-authored-by: Etienne Poirier <etienne.poirier@smilecdr.com>
* added failing tests
* tests pass
* Added changelog and javadocs
* fixed package tests for resources with no active field
* adding jira ticket number
* feedback from code review'
* switching to old style switch statement'
* moved classes
* Bump version
* licensing
* Repackage, fix messages
* reject empty streams
* Remove dead import
* Version bump
* Fix up test to actually return a data stream
* Move null binary svc to storage
* Improve batch2 error handling
* Build fixes
* Work on reindexing
* Test fixes
* Account for gzipped contents
* License header updates
* Register VS operations on public server
* Test fix
* Build fix
* Remove animal sniffer plugin
* Compile fix
* fix mongo date search with the NOT_EQUALS prefix
* add test & changelog
* add some unit tests
* rename unit test names to be more clear
Co-authored-by: olivia-you <olivia.you@smilecdr.com>
* Store resource data inline with lucene/es resourcetable index.
* Use fulltextsearch to load resources if resource inlined in ES/Lucene index
Co-authored-by: Jaison Baskaran <jaisonb@gmail.com>
* Start working on reindex job
* Updates
* Ongoing work
* Ongoing work
* Work on reindex
* Reindex work
* Add logging
* Fix typo
* Test fix
* Test fix
* Address fixme
* Liocense header
* Resolve fixme
* Add logging
* Update logs
* Address review comments
* License header
* Test fixes
* Test fix
* Test fixes
* Test fix
* Version bump
* Version bump
* Add reindex-terminology batch command
* Handle number of thread throttling and concurrency with other terminology batch operations
* Add required dbcp2 dependency
* Fix test
* Improve ConnectionPoolInfoProvider setup. Handle maximum connections.
* Remove java higher version construction
* Remove unused config
* Add reindex terminology integration test.
Reset termConcept counters before pre-expanding, which otherwise accumulate if it was pre-expanded before.
* Address MR comments
* Adjust test to tested class change
* Adjust test to tested class change
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
* Add reindex-terminology batch command
* Handle number of thread throttling and concurrency with other terminology batch operations
* Add required dbcp2 dependency
* Fix test
* Improve ConnectionPoolInfoProvider setup. Handle maximum connections.
* Remove java higher version construction
* Remove unused config
* Add reindex terminology integration test.
Reset termConcept counters before pre-expanding, which otherwise accumulate if it was pre-expanded before.
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
* fix handling of common search parameters
* Revert "fix handling of common search parameters"
This reverts commit 89c45eebdc.
* Fix implementation, add test (#3378)
* Fix implementation, add test
* Tighten test
* Rip out dead modules
* Add changelog
* Jr 20220210 handle common search params in contained searches (#3377)
* fix handling of common search parameters
* add support for reference search parameters with multiple paths
* Issue 3357
* Version bump
* Fixed null pointer exception for re-loading subscription on cdr restart and when there's no partition id in the request, and added tests
* added changelogs for this fix
* Fix broken changelog file
* Can't specify specific resource type permissions for bulk export (#3376)
* deny user from exporting without perms
* add unit tests
* add changelog
Co-authored-by: olivia-you <olivia.you@smilecdr.com>
* Make migration donothing as it was added in error
* Remove ehcache
* Add version.yaml:
* Add to sources/javadocs for dist
* Fix typo
* fix up pom
* wip test removing checkstyle plugin from deployable pom
* remove test pom changes, instead just dont deploy to sonatype
* typo
* Version bump
* Add implementation, testing, and changelog
* Add backport info, make aware of 6_0_0
* add jira ref
* Fix test
* Add versionenum
* Remove dups
* Remove unnecessary stuff
Co-authored-by: Jason Roberts <jason.roberts@smilecdr.com>
Co-authored-by: JasonRoberts-smile <85363818+JasonRoberts-smile@users.noreply.github.com>
Co-authored-by: Mark Iantorno <markiantorno@gmail.com>
Co-authored-by: Steven Li <steven@smilecdr.com>
Co-authored-by: Olivia You <46392181+oliviayou@users.noreply.github.com>
Co-authored-by: olivia-you <olivia.you@smilecdr.com>
* Enable search narrowing on large ValueSets
* ValueSet improvements
* Work on narrowing
* Work on narrowing
* Work on narrowing
* Work on narrowing
* Add test
* Work on narrowing interceptor
* Work on narrowing
* License headers
* Refactor code narrowing
* Add docs
* Version bump
* Test fix
* Test fixes
* Build fix
* Fixes
* Version bump
* Test fix
* License header updates
* Build fix
* Test fixes
* Test fix
* Test fix
* Docs fix
* Test fix
* Test fix
* Resolve fixme
* Bump
* Force a CI build
* Make CI happen again
* Added log to the create() and valiForUpload() methods in the PackageInstallerSvcImpl class
* Added helper methods to extract URL from SearchParameter.Tested and fixed log entries.
* Changelog entry
* Update 3384-Package-Install-added-logs-for-resources-validation.yaml
Co-authored-by: Kai Liu <kliu@Kais-MacBook-Pro.local>
* Work on new batch framework
* Work on new batch framework
* Work on new batch framework
* Work on batch
* Compile working
* Work on bulk import
* Adjust import
* Work
* Work on batch
* Bump version
* WOrk on new batch processes
* Work on bath
* Bump to PRE4
* Build fixes
* CLeanup
* Small tweak
* Add exception code
* Test fixes
* Test fixes
* Test fix
* Additional synchronization
* Add license headers
* Test fixes
* Test fixes
* Add changelogs
* Address PG
* Test fix
* Test fix
* Test fixes
* Review notes
* Work on tests
* Test fixes
* Test fix
* Work on tests
* Tets fix
* Test fixes
* Test fixes
* Add missing exception codes
* Test fix
* Test fixes
* More test fixing
* License headers
* Test fix
* Add new test logging
* Work on tests
* Test fixes
* Test fix
* Resolve fixme
* Try to avoid test failure
* Add import command
* Work on storage
* Fix error codes
* Fixes
* License header
* Build fix
* Build fixes
* Fix dep
* Refactor ValueSet expansion code to simplify property filtering by using new Hibernate search V6 nested classes capabilities; use generic hibernate search queries where possible (mostly everywhere but regex queries) and add R4 integration tests for both elastic and lucene.
* Refactor ValueSet expansion code to simplify property filtering by using new Hibernate search V6 nested classes capabilities; use generic hibernate search queries where possible (mostly everywhere but regex queries) and add R4 integration tests for both elastic and lucene.
* Add comment for trick
* Add codes to exception messages
* Add test specific for the fix
* Move changelog to current release. Add upgrade notice.
* Improve fail-fast method
* Update upgrade instructions
* Try luck with new exception codes
* Update hapi-fhir-storage/src/test/java/ca/uhn/fhir/jpa/search/ElasticsearchNestedQueryBuilderUtilTest.java
Add missed quote
Co-authored-by: michaelabuckley <michael.buckley@smilecdr.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: michaelabuckley <michael.buckley@smilecdr.com>
* Add FK index to avoid timeout when deleting large ValueSet
* Add exception to allow same name for index and FK
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
* Start working on graphql Schema
* Start testing
* Work on introspection
* Work on introspection
* Use integers for date ordinals
* Add changelog
* GraphQL updates
* Ongoing wrk
* Cleanup
* Bump core lib
* Add changelog
* Clean up dependencies
* CLeanup
* Add missing message
* Test fix
* Change to force CI
* export rules are applied now
* add changelog and test
* add changelog
* Delete 2797-bulk-export-getting-incorrect-group-data.yml
* update test
* add test
Co-authored-by: olivia-you <olivia.you@smilecdr.com>
* fix handling of common search parameters
* Revert "fix handling of common search parameters"
This reverts commit 89c45eebdc.
* Fix implementation, add test (#3378)
* Fix implementation, add test
* Tighten test
* Rip out dead modules
* Add changelog
* Jr 20220210 handle common search params in contained searches (#3377)
* fix handling of common search parameters
* add support for reference search parameters with multiple paths
* Issue 3357
* Version bump
* Fixed null pointer exception for re-loading subscription on cdr restart and when there's no partition id in the request, and added tests
* added changelogs for this fix
* Fix broken changelog file
* Can't specify specific resource type permissions for bulk export (#3376)
* deny user from exporting without perms
* add unit tests
* add changelog
Co-authored-by: olivia-you <olivia.you@smilecdr.com>
* Make migration donothing as it was added in error
* Remove ehcache
* Add version.yaml:
* Add to sources/javadocs for dist
* Fix typo
* fix up pom
* wip test removing checkstyle plugin from deployable pom
* remove test pom changes, instead just dont deploy to sonatype
* typo
* Remove ehcache
Co-authored-by: Jason Roberts <jason.roberts@smilecdr.com>
Co-authored-by: JasonRoberts-smile <85363818+JasonRoberts-smile@users.noreply.github.com>
Co-authored-by: Mark Iantorno <markiantorno@gmail.com>
Co-authored-by: Steven Li <steven@smilecdr.com>
Co-authored-by: Olivia You <46392181+oliviayou@users.noreply.github.com>
Co-authored-by: olivia-you <olivia.you@smilecdr.com>
* fix handling of common search parameters
* Revert "fix handling of common search parameters"
This reverts commit 89c45eebdc.
* Fix implementation, add test (#3378)
* Fix implementation, add test
* Tighten test
* Rip out dead modules
* Add changelog
Co-authored-by: Jason Roberts <jason.roberts@smilecdr.com>
* Fixed null pointer exception for re-loading subscription on cdr restart and when there's no partition id in the request, and added tests
* added changelogs for this fix
Co-authored-by: Steven Li <steven@smilecdr.com>
* feat: added support for package.zgz uri in the "file:/" format
* added changelog entry
* add error code to thrown message
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
jamesagnew
Etienne Poirier
Tadgh
Mark Iantorno
Olivia You
michaelabuckley
Jaison Baskaran
jmarchionatto
Ken Stevens
samuelwlee2
kailiu-smile
katiesmilecdr
Patrick Werner
StevenXLi
michaelabuckley
Tadgh