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328 Commits

Author SHA1 Message Date
James 077676fd03 Bring DSTU3 structs up to FHIR R3 
Squashed commit of the following:

commit 65b70d30c9
Author: James <jamesagnew@gmail.com>
Date:   Tue Apr 18 07:44:08 2017 -0400

    More work on bringing structs up to date

commit 1df2de0667
Author: James <jamesagnew@gmail.com>
Date:   Tue Apr 18 07:12:45 2017 -0400

    Working

commit 9a51323e03
Author: James <jamesagnew@gmail.com>
Date:   Mon Apr 17 22:18:24 2017 -0400

    Updates to STU3

commit 40aebba0a7
Author: James <jamesagnew@gmail.com>
Date:   Mon Apr 17 18:30:26 2017 -0400

    Fix regression caused by #610
 2017-04-18 07:48:38 -04:00
James 1039bbec97 More perf work 2017-04-14 07:25:01 -04:00
michael.i.calderero 125f9b4fed JsonParser tests for OverrideResourceIdWithBundleEntryFullUrl 2017-04-13 13:37:02 -05:00
michael.i.calderero b890bf3c75 XmlParser tests for OverrideResourceIdWithBundleEntryFullUrl 2017-04-13 12:09:31 -05:00
James 40848b1beb Version bump to 2.4-SNAPSHOT 2017-03-18 12:24:39 -04:00
James e18ab206d7 Version bump to 2.3 2017-03-17 21:21:59 -04:00
James 8758b6f3da Updating to 1.9.0 structures 
Squashed commit of the following:

commit 81edf46fe02a88851693f958e60855edfe69c04c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Fri Mar 17 21:05:22 2017 -0400

    Work on converter

commit 3342d987008892dd3a75dddd251fe599c31c5a6c
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 08:40:37 2017 -0400

    Site updates

commit 7dcb63904ece1fcb59a09dc268e8382ac0b75535
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 08:36:39 2017 -0400

    STU3 structs working!

commit c5aec809e3f19f3fedf0aaaeab8cdd7924c144a2
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 07:05:54 2017 -0400

    Format test

commit 5033090010e8c93644505bccaa5e41ccbd756485
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 07:03:39 2017 -0400

    Merge tests for STU3

commit de40a516bfa4d2ab7f5e28e2d95815fde68bd10a
Merge: d5a5a60 899ed25
Author: James <jamesagnew@gmail.com>
Date:   Fri Mar 17 06:59:20 2017 -0400

    Merge branch 'master' into dstu3_latest_structs

commit d5a5a601b53d8be6712f0bfe37ba7e6eb4d3ce58
Author: James <jamesagnew@gmail.com>
Date:   Tue Mar 14 12:04:37 2017 -0400

    Latest fixes

commit ae46ad53d2075e66e3c58c1e626652b4e144f20c
Author: James <jamesagnew@gmail.com>
Date:   Tue Mar 14 06:51:59 2017 -0400

    STU3 structs passing

commit ec3b62d31131d303001f8574c58fb7a8b8194f68
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 22:20:05 2017 -0400

    Fix some tests

commit 933f9b08c32dd8671638f406a0966c5ee07d86a1
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 21:18:03 2017 -0400

    Fix test

commit 2a3ad0b422f58cfffea966a7005c6a3d86d189da
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 21:07:33 2017 -0400

    Resolve compile issues in STU3

commit fe04eba312a42c74b10a3971e4d61d58ba003bf9
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:51:35 2017 -0400

    FIx compilation error

commit 6c63a558c97cf176105967a84a0b32472c6c0fcb
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:48:13 2017 -0400

    Another STU3 struct fix

commit 6acd25458aad89aaff94768c824d4d1fcdac97ba
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:41:16 2017 -0400

    Work on STU3 structs

commit 90a476dba2665a129572ad5cbbd8dd29afd9d4c8
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:28:32 2017 -0400

    Resolve JDK8 dependencies

commit 783bc1519971e977fe7139aa1d3a2e7f37940a63
Author: James Agnew <jamesagnew@gmail.com>
Date:   Sun Mar 12 20:20:57 2017 -0400

    Fix some tests

commit 60c379175b689495e65278bb6a237af3de379aa8
Author: James <jamesagnew@gmail.com>
Date:   Sun Mar 12 19:56:29 2017 -0400

    Work on STU3 structs

commit e98c2eed6601f7009e199aca3b82399a3377077c
Author: James <jamesagnew@gmail.com>
Date:   Sun Mar 12 19:41:48 2017 -0400

    Work on DSTU3 structures

commit 3ce909212bf0f11561b8342d406cffcf957afeb3
Author: James <jamesagnew@gmail.com>
Date:   Tue Mar 7 21:03:14 2017 -0500

    Work up upgrading structs
 2017-03-17 21:06:12 -04:00
James Agnew 45e4bd92ee Merge branch 'master' into jaxrs-sever-evolution 2017-03-16 22:04:55 -04:00
James Agnew 5811702a92 Merge branch 'master' into master 2017-02-17 17:39:55 -05:00
James Agnew 82ac69d86c Throw correct HTTP status when validation fails because of missing ID 2017-02-11 19:22:25 -05:00
James 12e047b931 Fix a couple of compile issues 2017-02-09 06:53:22 -05:00
sekaijin 7adb35d003 resolve some warnings 
unused
then clause does not complete normally
serial
missing @Override
remove unnecessary cast
 2017-02-08 16:41:03 +01:00
Sebastien Riviere 3bf6555d61 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir into jaxrs-sever-evolution 2017-02-06 11:34:31 +01:00
sekaijin a150a96089 dependencies convergence 
correct dependencies convergence
correct version use ${project.version}
 2017-01-29 19:22:28 +01:00
sekaijin 23784c1619 remove .settings .project .classpath file of eclipse 2017-01-28 17:13:47 +01:00
Sebastien Riviere 13646168f0 Use the profile of the datatype if available, intead of the default hl7.org url 2017-01-19 14:55:42 +01:00
James b448e13edd Version bump to 2.3 2016-12-20 19:01:31 -05:00
James 0ec61533a8 Publish 2.2 2016-12-20 19:00:37 -05:00
James 18e47c2130 More validator tests 2016-12-20 09:30:46 -05:00
James 964919d880 Improve parsing 2016-12-19 14:03:11 -05:00
James ab17ee68a3 Revert IFhirVersion method signature changes for #520 2016-12-11 18:55:59 -05:00
James b0d656e5d9 Refactor fix for #520 a bit so that version in DSTU3 is always pulled 
from the model
 2016-12-10 14:40:27 -05:00
James Agnew 888f42a032 Introduce new CORS interceptor and switch examples to use it 2016-11-21 18:30:51 +01:00
James Agnew 03935be97f Work on common FluentPath interface 2016-11-21 15:52:17 +01:00
James Agnew bf35f7e4b2 Fix #495 - Auto-detect DSTU3 mode when those resources are on classpath 2016-11-21 13:44:54 +01:00
James 2d7592f7a8 Version bump to 2.2-SNAPSHOT 2016-11-11 22:39:45 -05:00
James 2dd26b6367 Version bump to 2.1 2016-11-11 15:16:53 -05:00
James Agnew 906bcfb803 Version bump to 2.1 2016-08-30 10:55:55 -04:00
James Agnew d27aad487e Bump to 2.0 release 2016-08-30 10:50:04 -04:00
James 333aa0afde Correctly update versions on transactipn update 2016-08-28 22:56:59 -04:00
James 779b66c5e4 Add unit test 2016-08-11 20:55:11 -04:00
jamesagnew c193514ff7 Add eclipse files 2016-08-06 15:44:47 -04:00
James Agnew 3e7cd153fd Update DSTU3 definitions to latest 2016-08-05 12:36:41 -04:00
jamesagnew 7dbd5a21ca Fix tests 2016-07-24 09:20:54 -04:00
jamesagnew 196c11bfa2 Use new style mimetypes but keep supportuing the old ones as well 2016-07-17 18:35:06 -04:00
James Agnew 0b69367b11 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-07-13 09:22:19 -04:00
jamesagnew fa37afb61f Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-07-12 21:44:52 -04:00
jamesagnew ed941a116b Update to use GSON 2016-07-12 21:44:40 -04:00
James Agnew c550681aeb Update defs to 1.5.0 versions 2016-07-12 18:29:10 -04:00
James Agnew c3e9f618eb Version bump to 2.0-SNAPSHOT 2016-07-12 11:12:07 -04:00
jamesagnew acaf2135c5 Finalize 1.6 release 2016-07-06 07:29:20 -04:00
James Agnew 1683cf8cef Switch to jacoco 2016-06-15 17:34:50 -04:00
James Agnew e2f1beef2c Fix some tests 2016-06-14 22:03:24 -04:00
James Agnew 7e57aed5d6 Significant performance enhancements for context startup 2016-06-06 11:15:11 -07:00
jamesagnew a2954ef181 Fix build 2016-05-30 06:57:01 -04:00
James Agnew 236dfe586f Fix tests 2016-05-27 10:50:31 -04:00
jamesagnew 35ffbf1568 Sync DSTU2 validator with RI 2016-05-24 09:22:16 -04:00
jamesagnew 514da88787 Improve performance in parser when parsing large bundles 2016-04-23 13:54:16 -04:00
jamesagnew 38e80531bb Bump version to 1.6-SNAPSHOT 2016-04-22 07:05:05 -04:00
jamesagnew 846e216c04 Fix tests 2016-04-17 12:58:36 -04:00
jamesagnew 72640dc720 Correct encoding order for DSTU2 resources 2016-04-14 07:53:37 -04:00
jamesagnew 81dec23faf Correctly populate Bundle.entry.fullUrl on Hl7OrgDstu2 servers 2016-04-14 06:59:43 -04:00
jamesagnew 0780b7e472 Add tests 2016-04-14 06:36:29 -04:00
jamesagnew 2f37015d57 Clean up parsers so that elements are always encoded according to their order in the structures that contain them 2016-04-11 08:36:12 -04:00
James Agnew 1adfc4b4d9 Fix #315 - Allow declaring of custom types for specific profiles 2016-03-22 11:46:08 +01:00
jamesagnew 232afee955 Improved error messages for #305 2016-03-11 07:56:00 -05:00
James Agnew 8de41ca8b4 Attempting to reduce memory usage during tests 2016-03-06 14:38:18 -05:00
jamesagnew 1da5855c9c Add Eclipse files to git 2016-02-28 14:02:29 -05:00
jamesagnew 23f9292b50 Add support for comments in XML and JSON parsing/encoding 2016-02-08 22:05:17 -05:00
James Agnew f21851099c Version bump 2016-02-08 13:59:09 -05:00
James Agnew e0e52f96c6 Version bump to 1.4 (finally!) 2016-02-03 15:25:32 -05:00
jamesagnew 5ef88d0447 Avoid conflict in HL7org-DSTU2 structures 2016-01-21 08:49:26 -05:00
jamesagnew 1ba03f4a9b Fix #283 - Remove servlet 3.0 dependency where possible 2016-01-20 08:11:03 -05:00
James Agnew 589059256f Correct issues uncovered during connectathon 2016-01-11 07:42:13 -05:00
James Agnew c1afb4f54d Get overlay working for DSTU2.1 2016-01-07 15:04:56 -05:00
James Agnew 0fff6018eb Travis 2016-01-07 13:05:57 -05:00
James Agnew ca61ef2e23 More travis 2016-01-07 11:37:33 -05:00
James Agnew 0c8c414784 Try to get travis working 2016-01-07 11:17:54 -05:00
James Agnew 479da24cfb Bump license files 2016-01-07 08:50:07 -05:00
James Agnew 9c5a5dc248 Still more travis 2016-01-06 12:59:45 -05:00
James Agnew eb3f3a0386 Try to get travis passing yet again 2016-01-06 09:56:36 -05:00
jamesagnew 685bd9345b Add request/response validator interceptors 2016-01-03 21:52:11 -05:00
jamesagnew 5789db8743 Remove dependency on cobertura at compile time 2016-01-02 10:55:52 -05:00
jamesagnew d48761a640 Travis failing again 2016-01-02 09:35:18 -05:00
jamesagnew 718a26671f DSTU2.1 structures working 2016-01-01 16:59:19 -05:00
jamesagnew 056900f324 Lots more work on DSTU2.1 structures 2015-12-30 11:27:12 -06:00
jamesagnew 7692e5d714 More work on DSTU2.1 structs 2015-12-22 09:32:06 -05:00
jamesagnew 2469aa3725 Lots of DSTU2.1 structure work 2015-12-20 23:35:47 -05:00
jamesagnew aaf85f2323 Lots of work on DSTU2.1 structures 2015-12-20 09:29:52 -05:00
jamesagnew 3005c9a766 Still working on unit tests 2015-12-15 09:11:01 -05:00
jamesagnew ea89f3af28 Correctly return profile 2015-12-09 07:07:05 -05:00
James Agnew 2f8278ff78 Fix build 2015-12-02 10:10:10 -05:00
James Agnew 547b5290a4 Update resource defs 2015-12-01 18:35:24 -05:00
jamesagnew d47e0e5e77 Add DSTU2.1 resources 2015-11-29 11:43:09 -05:00
jamesagnew e6b47855e6 Merge branch 'master' of git://github.com/petervanhoute/hapi-fhir into petervanhoute-master 2015-11-27 14:59:53 -05:00
James Agnew c78be081ef Add CLI test 2015-11-20 10:30:10 +01:00
James Agnew 1c82a692f6 Try to reduce memory for unit tests 2015-11-16 14:13:34 +01:00
James Agnew e7dda532c6 Tests are failing on Travis but not locally... Argh 2015-11-16 14:00:35 +01:00
James Agnew 18f7e958d2 Debug info for failing test 2015-11-15 20:17:36 -05:00
James Agnew 2f12c9ed01 Bump version to 1.4-SNAPSHOT 2015-11-15 20:11:05 -05:00
James Agnew f9f33f059b Version bump to 1.3 2015-11-15 12:53:02 -05:00
James Agnew 614b7e09e5 Bump to 1.0.2 FHIR definitions 2015-11-15 12:22:56 -05:00
James Agnew d3685e72ba Fix #241 and fix #247 - Don't encode UUID IDs on resources, and preserve 
bundle type when retrieving pages
 2015-10-29 15:38:19 -04:00
jamesagnew c31900b827 JPA performance tweaks: Avoid unneccesary fulltext index pass during transaction and tag lookup 2015-10-25 12:18:21 -04:00
jamesagnew 938a251ae9 Cleanup tests for java config in JPA 2015-10-19 20:19:40 -04:00
James Agnew e9d18af5d9 Bump library versions 2015-10-14 18:11:52 -04:00
James Agnew 8794de7a22 Improve validation messages 2015-10-08 18:31:30 -04:00
petervanhoute 7f910974a2 create seperate response and server interfaces and classes for servlets and jaxrs 2015-10-07 17:11:16 +02:00
James Agnew 43aad1eb98 Properly support chains in JPA conditional URLs 2015-10-04 15:38:58 -04:00
James Agnew aa32e6f0a9 Improve ValueSet operations in JPA 2015-10-02 12:37:56 -04:00
James Agnew 68a5bd3b23 Add tests 2015-09-29 17:04:14 -04:00
James Agnew ca8c257833 Support lastupdate filtering and sorting on JPA everything operation 2015-09-29 13:24:33 -04:00
James Agnew 1cc6a05273 FIx validation for resources using v2 tables 2015-09-29 10:51:36 -04:00
jamesagnew 9492744018 Work on subsciprions 2015-09-28 09:06:57 -04:00
James Agnew 072c1ece87 Send Accept header on client requests, and allow string responses in 
QuestionnaireResponse validator for questions of type OPENCHOICE
 2015-09-24 13:40:07 -04:00
jamesagnew 70e942e9f8 Version bump to 1.3-SNAPSHOT 2015-09-19 11:00:57 -04:00
jamesagnew 31934ff582 Version bump to 1.2 2015-09-16 07:09:03 -04:00
James Agnew 73121e222c Add tests 2015-09-15 14:11:55 -04:00
James Agnew 2961d2e91b POM cleanup 2015-09-15 10:28:09 -04:00
jamesagnew b1df85eb37 Validation now working completely in JPA server 2015-09-15 08:27:49 -04:00
jamesagnew 45d7d9a922 Documentation only 2015-09-14 21:20:16 -04:00
jamesagnew c96d5efe1f Work on updating validator 2015-09-14 08:22:43 -04:00
jamesagnew d0bac3d419 Work on CLI tool 2015-09-13 22:06:31 -04:00
jamesagnew 8120ab2228 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-09-09 22:46:48 -04:00
jamesagnew 437625505c Add some tests and some cleanup of unused code 2015-09-09 22:41:10 -04:00
de Beaubien, Bill 5b64a7f569 #221 and now, with null-checking so the tests don't break... 2015-09-09 17:06:27 -04:00
de Beaubien, Bill b1db2bf2d8 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir 2015-09-09 16:47:20 -04:00
de Beaubien, Bill 27764da19a #221 Conformance date now defaults to the build date/time 2015-09-09 16:47:07 -04:00
James Agnew 2a3088f2e2 Add tests 2015-09-09 16:08:21 -04:00
jamesagnew aa8334a99a Merge remote-tracking branch 'upstream/master' into osgi-pull-request 2015-09-09 08:41:45 -04:00
bdenton daedf63c46 Decouple RestfulService and ServerConformanceProvider to avoid cycle in 
Spring wiring
 2015-09-09 07:01:03 -04:00
James Agnew 69596abdc9 Once more fixing the build 2015-09-08 10:31:47 -04:00
jamesagnew a733ad0949 Fix build 2015-09-08 08:58:23 -04:00
jamesagnew bb5816d8e9 Fix second part of #216 - Correctly encode choice elements on profiled datatypes 2015-09-08 08:01:51 -04:00
miantorno e3c3600700 Merge branch 'master' of https://github.com/jamesagnew/hapi-fhir 2015-09-04 09:08:07 -04:00
jamesagnew 773608f860 Validation documentation 2015-09-04 08:22:06 -04:00
miantorno a4d973696e Updating pom.xml files for dstu2. 2015-09-03 14:36:37 -04:00
jamesagnew f3e44eea3b Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-09-03 08:08:13 -04:00
jamesagnew 8b20f3a77d Sync to 1.0.0 FHIR definitions 2015-09-03 08:07:43 -04:00
James Agnew ae177b52e8 Populate Bundle.entry.fullUrl 2015-09-02 13:42:59 -04:00
jamesagnew 64cc5d4659 Bump FHIR version to 1.0.0 2015-09-01 08:56:07 -04:00
James Agnew a6d76cc2ca Remove SLF 1.7 API usage 2015-08-31 10:21:07 -04:00
James Agnew fc36dabc68 Fix build 2015-08-31 09:23:21 -04:00
jamesagnew a9f978a8a2 Udate to latest DSTU2 definitions 2015-08-31 08:20:24 -04:00
James Agnew bd13b53099 Fix #212 - Dont accept invalid IDs but do accept IDs starting with a 
number
 2015-08-28 15:36:56 -04:00
jamesagnew 073fa47807 Add support for _include:recurse behaviour 2015-08-27 19:44:51 -04:00
jamesagnew bec43b3fdc Fix tests 2015-08-24 08:29:02 -04:00
jamesagnew 60339d6f93 Fix #209 - _revinclude results from JPA server should have a Bundle.entry.search.mode of "include" and not "match". Thanks to Josh Mandel for reporting! 2015-08-23 22:25:25 -04:00
jamesagnew 11376024fa Fixing test related to summary and elements mode 2015-08-23 21:51:46 -04:00
jamesagnew 44ac164eca Work on #125 - Support _summary and _elements 2015-08-23 13:29:57 -04:00
jamesagnew 07d654c97b More work on validator 2015-08-21 09:03:48 -04:00
jamesagnew 34d6ae1fc5 Fix bad import 2015-08-20 21:42:35 -04:00
jamesagnew e4b732efe6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2015-08-20 21:35:34 -04:00
jamesagnew 00931b58a1 Work on validator 2015-08-20 20:42:56 -04:00
James Agnew e20e7d1e67 Fix resource 2015-08-20 17:08:22 -04:00
James Agnew 3901c429df More work on InstanceValidator 2015-08-20 16:17:22 -04:00
James Agnew 7645c240f4 Get instance validator working across FHIR versions 2015-08-20 15:27:24 -04:00
James Agnew 11f5aeebd9 Clean up the build and hopefully close #206 2015-08-19 11:49:00 -04:00
James Agnew bb1e8b9ddd Last commit broke cobertura 2015-08-17 15:54:00 -04:00
jamesagnew ac564a54d6 Documentation cleanup 2015-08-17 07:57:20 -04:00