7159d65902
bump databind version for CVE
2021-01-21 10:03:16 -05:00
7cf41a7e85
One more build fix (grrrrrr)
2021-01-21 09:24:42 -05:00
656dd33ba8
FIx javadoc build
2021-01-21 08:58:23 -05:00
078a94f1a6
Fix nonnull annotations
2021-01-21 08:47:44 -05:00
14b0688f69
Bump core version to 5.2.16 ( #2308 )
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* Bump core library version
* Test fix
* Build fixes
* Some test fixes
* One more bit of docs
* Build fix
* Test fix
* Test fix
* Docs fix
2021-01-21 05:30:23 -05:00
a538ed571a
Merge pull request #2306 from hapifhir/bump-es-version-for-cve
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Minor version bump for CVE-2021-22132
2021-01-20 22:54:51 -05:00
f99733244e
Merge pull request #2305 from hapifhir/add-backport-information
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Prepare for backporting
2021-01-20 14:45:14 -05:00
3d5255d88c
Bump ES version running in tests
2021-01-20 11:34:51 -05:00
fa17ea35cd
Minor version bump for CVE-2021-22132
2021-01-20 11:31:00 -05:00
159128109b
Add versionenum value
2021-01-20 10:49:08 -05:00
063f4b7700
Add license headers
2021-01-19 14:18:46 -05:00
874b16207f
Bundle.entry.resource.id should not be stripped on POST from client #2297 ( #2303 )
2021-01-19 11:12:42 -05:00
240decc210
Added an extra check for an IS NOT NULL Constraint when checking an Oracle DB Column for Nullability ( #2288 )
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* Added an extra check for an IS NOT NULL Constraint when checking an Oracle DB Column for Nullability.
2021-01-19 08:44:41 -05:00
649032681d
Merge pull request #2301 from hapifhir/disable-docker-tests-in-non-docker
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Disable docker tests in non docker
2021-01-18 23:11:54 -05:00
ceb0155ab7
Fix hamcrest inclusion via compile scope
2021-01-18 22:07:12 -05:00
8d87f0f92b
Simplify check
2021-01-18 21:53:14 -05:00
edbc789a93
Add annotation to skip test classes which require docker if it is not found on the host
2021-01-18 21:49:43 -05:00
17d74648de
Merge pull request #2300 from hapifhir/2299-bug-with-bulk-export-bean
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Add bean to config
2021-01-18 16:53:36 -05:00
7c6c64bfb7
Remove dead import
2021-01-18 15:53:49 -05:00
292d7751b3
Merge pull request #2298 from hapifhir/im_20210118_db_migrate_dryrun_issue
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Ensure that table indexes are not deleted during DB migration dry-run.
2021-01-18 15:14:22 -05:00
141cd14918
Add changelog
2021-01-18 15:04:03 -05:00
5b2530a948
Remove dead beans
2021-01-18 14:55:33 -05:00
8f72970063
Add bean to config
2021-01-18 14:09:38 -05:00
26491f3bc8
Ensure that table indexes are not deleted during DB migration dry-run.
2021-01-18 14:09:06 -05:00
1972838249
Ensure that table indexes are not deleted during DB migration dry-run.
2021-01-18 14:03:50 -05:00
a08392e6b2
Add license header
2021-01-17 19:10:34 -05:00
6ff7d579a3
Update changelog
2021-01-17 17:43:42 -05:00
2db35f4dcb
Bump spring_version from 5.3.2 to 5.3.3 ( #2295 )
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Bumps `spring_version` from 5.3.2 to 5.3.3.
Updates `spring-beans` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-context` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-context-support` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-core` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-jdbc` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-messaging` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-orm` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-test` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-tx` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-web` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-webmvc` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Updates `spring-websocket` from 5.3.2 to 5.3.3
- [Release notes](https://github.com/spring-projects/spring-framework/releases )
- [Commits](https://github.com/spring-projects/spring-framework/compare/v5.3.2...v5.3.3 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-01-17 17:43:11 -05:00
66e1a51e01
Add validation options to RepositoryValidingInterceptor ( #2294 )
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* Add repository validating interceptor outcome to response
* Add a doc
* Add a test and some docs
* Rework validation
2021-01-17 16:40:32 -05:00
391a6d1a3f
Bump ph-schematron from 5.2.0 to 5.6.5 ( #2184 )
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* Bump ph-schematron from 5.2.0 to 5.6.5
Bumps [ph-schematron](https://github.com/phax/ph-schematron ) from 5.2.0 to 5.6.5.
- [Release notes](https://github.com/phax/ph-schematron/releases )
- [Commits](https://github.com/phax/ph-schematron/compare/ph-schematron-parent-pom-5.2.0...ph-schematron-parent-pom-5.6.5 )
Signed-off-by: dependabot[bot] <support@github.com>
* Fix compile error
* Build fix
* Add test logging
* Test fix
* Resolve classpath duplicates
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-17 14:27:26 -05:00
ae3930f204
Update changelog
2021-01-17 13:30:19 -05:00
cc2a1c16c8
Bump commons-collections4 from 4.3 to 4.4 ( #2292 )
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Bumps commons-collections4 from 4.3 to 4.4.
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-01-17 13:27:48 -05:00
29cf20aac3
Add repo validation outcome to response ( #2293 )
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* Add repository validating interceptor outcome to response
* Add a doc
* Add a test and some docs
2021-01-17 12:50:13 -05:00
9d8bbaf868
Add credit for #2054
2021-01-17 09:44:18 -05:00
99b646eed7
Mapping noExtensibleWarnings and noBindingMsgSuppressed between FhirInstanceValidator and InstanceValidator ( #2054 )
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Co-authored-by: ahn <anders.havn@systematic.com>
2021-01-17 09:21:08 -05:00
57bebe50e8
One more test fix
2021-01-17 08:52:40 -05:00
4913c33fdf
Test fix
2021-01-17 07:24:00 -05:00
8b338cd168
rework r4 RDF tests to skip fewer examples ( #2159 )
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+ relative URL resolution in RDFParser
+ test non-DomainResources in RDFParserTest
~ factor/organize RDFParserTest
~ avoid EXTERNAL shapes (for now) in shex-java
- disable the bundle-response.json example as it is apparently malformed
+ added urn:-guard to PreResourceStateHl7Org.wereBack ID update
2021-01-16 19:15:39 -05:00
8a0b0885f2
Bump jersey_version from 2.25.1 to 3.0.0 ( #2245 )
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Bumps `jersey_version` from 2.25.1 to 3.0.0.
Updates `jersey-server` from 2.25.1 to 3.0.0
Updates `jersey-container-servlet-core` from 2.25.1 to 3.0.0
Updates `jersey-container-jetty-http` from 2.25.1 to 3.0.0
Updates `jersey-media-moxy` from 2.25.1 to 3.0.0
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-01-16 19:13:54 -05:00
a7c9b9d2f3
Changelog
2021-01-16 19:08:55 -05:00
472eba040a
Bump jansi from 1.18 to 2.1.1 ( #2253 )
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Bumps [jansi](https://github.com/fusesource/jansi ) from 1.18 to 2.1.1.
- [Release notes](https://github.com/fusesource/jansi/releases )
- [Changelog](https://github.com/fusesource/jansi/blob/master/changelog.md )
- [Commits](https://github.com/fusesource/jansi/compare/jansi-project-1.18...jansi-2.1.1 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-01-16 19:05:31 -05:00
1dc4fb2206
Make quantity indexes use double datatype ( #2290 )
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* Make quantity indexes use double datatype
* Add changelog
* Test fixes
* Test fixes
* Disable test
2021-01-16 18:44:15 -05:00
24ac055b50
Bump jackson_version from 2.11.2 to 2.12.1 ( #2287 )
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Bumps `jackson_version` from 2.11.2 to 2.12.1.
Updates `jackson-annotations` from 2.11.2 to 2.12.1
- [Release notes](https://github.com/FasterXML/jackson/releases )
- [Commits](https://github.com/FasterXML/jackson/commits )
Updates `jackson-core` from 2.11.2 to 2.12.1
- [Release notes](https://github.com/FasterXML/jackson-core/releases )
- [Commits](https://github.com/FasterXML/jackson-core/compare/jackson-core-2.11.2...jackson-core-2.12.1 )
Updates `jackson-datatype-jsr310` from 2.11.2 to 2.12.1
Updates `jackson-dataformat-yaml` from 2.11.2 to 2.12.1
- [Release notes](https://github.com/FasterXML/jackson-dataformats-text/releases )
- [Commits](https://github.com/FasterXML/jackson-dataformats-text/compare/jackson-dataformats-text-2.11.2...jackson-dataformats-text-2.12.1 )
Updates `jackson-module-jaxb-annotations` from 2.11.2 to 2.12.1
- [Release notes](https://github.com/FasterXML/jackson-modules-base/releases )
- [Commits](https://github.com/FasterXML/jackson-modules-base/compare/jackson-modules-base-2.11.2...jackson-modules-base-2.12.1 )
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-01-16 13:47:30 -05:00
4791c81aec
Improve package loading logs
2021-01-15 06:19:57 -05:00
ef407d85bf
Add logging
2021-01-12 08:56:12 -05:00
5b5023e6ac
License headers
2021-01-11 21:00:12 -05:00
520400d6ea
added IPagingProvider.canSearchByOffset() ( #2281 )
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* init rev
* added IPagingProvider.canSearchByOffset()
consolidated parameters in bundle link methods
* fix refactoring error
* add @Nonnull to BundleLinks parameter
* null check
* fix test
* cleanup
* fix refactoring
* final cleanup
* review feedback
* review feedback
* review feedback
2021-01-11 20:42:41 -05:00
ee7b19fe3c
Fixed the migration scripts ( #2283 )
2021-01-11 20:36:54 -05:00
f6d4a40388
UCUM Service Support ( #2261 )
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* Added UcumServiceUtil
* Removed ucum-essense.xml
* Added ucum service existing test cases passed
* Added more test cases
* Merge branch 'master' into ft-ucum-support
# Please enter a commit message to explain why this merge is necessary,
# especially if it merges an updated upstream into a topic branch.
#
# Lines starting with '#' will be ignored, and an empty message aborts
# the commit.
* Added back extractReferenceParamsAsQueryTokens
* Added changelog and migration script
* Added length for the string type
* Moved UCUM util to hapi-fhir-jpaserver-model
* Renamed UCUM support to Normalized Quantity Search Support
* Moved setNormalizedQuantitySearchNotSupported to AfterEach
* Changed migrate task to 530
* Removed comments
* Fixed in memory search issue and added more test cases
* Fixed the version order
* License header updates
* Updated based on review comments
* Updated the migration task based on review comments
* Fixed RES_TYPE with type String and length 100
* Changed myParamsQuantityNormalizedPopulated type to Boolean class
2021-01-10 21:05:24 -05:00
88b01a3bb4
Changed the minGramSize back to 3 ( #2279 )
2021-01-10 09:02:59 -05:00
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