6643 Commits

Author SHA1 Message Date
Tadgh
81d5ff8f5a Add schema initialization 2020-05-27 17:06:52 -07:00
Ken Stevens
97a1bd40a1
Added TLS parameters to Java Mail Sender (#1666)
* Added TLS parameters to Java Mail Sender

* changelog
2020-05-27 19:17:01 -04:00
Diederik Muylwyk
cc9f16721f
Merge pull request #1877 from jamesagnew/dm-fix-duplicate-maven-enforcer-plugin-in-pom
Redundant maven-enforcer-plugin removed from POM.
2020-05-27 16:10:02 -04:00
Diederik Muylwyk
93a1229789 Removing redundant maven-enforcer-plugin execution. 2020-05-27 12:57:11 -04:00
Diederik Muylwyk
ed1e103751 Duplicate maven-enforcer-plugin removed, executions consolidated. 2020-05-27 12:39:17 -04:00
James Agnew
22af36ae7b
Conditional update on Partitioned Server fails (#1870)
* Fix #1869

* Remove FIXME

* Test fix

* Test fix
2020-05-27 10:40:29 -04:00
ianmarshall
5cc77b78d4 Fixed problems with results of chunked queries being incorrectly sorted. 2020-05-26 18:09:54 -04:00
Tadgh
48fcf8a39d wip 2020-05-26 12:08:00 -07:00
jamesagnew
5482367e37 Remove redundant index - Already covered by FK 2020-05-26 08:54:00 -04:00
jamesagnew
499f1ce672 Test order fix 2020-05-26 05:41:45 -04:00
Tadgh
35b1533db1 Add new project for spring batch 2020-05-25 22:32:00 -07:00
James Agnew
6899604ae4
Correct validation of fragment codesystems (#1865)
* Update validation for fragment codesystem

* Test fixes

* Add changelog

* Test fix
2020-05-25 20:44:09 -04:00
jamesagnew
0175396ee0 Docs fix 2020-05-25 20:28:57 -04:00
ianmarshall
b250ac4f3d Add a change log. 2020-05-25 18:42:17 -04:00
ianmarshall
a63d90c1f5 Additional cleanup and test fixes. 2020-05-25 18:36:04 -04:00
ianmarshall
1e554731bb Additional cleanup and test fixes. 2020-05-25 18:25:25 -04:00
ianmarshall
6ed724e01b Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch 2020-05-25 17:40:53 -04:00
jamesagnew
2bcfe7cdaa Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2020-05-25 13:20:59 -04:00
jamesagnew
bf550f9c27 License header updates 2020-05-25 13:20:32 -04:00
James Agnew
535bf88efe
Fixes to diff operation (#1866) 2020-05-25 13:16:58 -04:00
ianmarshall
ee87a2e2d0 Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch 2020-05-25 11:37:34 -04:00
ianmarshall
816f409a8a Re-factor lastn entities to locate them is same package as other Search Parameter entities. 2020-05-25 11:37:01 -04:00
jamesagnew
3807640347 Resolve merge conflict 2020-05-24 11:38:52 -04:00
jamesagnew
6a4f5b9b3a Credit for #1826 2020-05-24 09:32:44 -04:00
Martin Zacho Grønhøj
9bde517540
Install external ig package at startup (#1826)
* Do not use deprecated methods in structures-r4 test

* beginning development of feature Implementation Guide installer

* fetch IG, generate snapshots of SDs of and persist conformance resources to db

Missing initialization, error-handling and handling of NameSystems and Subscriptions

* Refactor IgInstaller and implement support for R4 and R5

* Error handling and removed logic for invoking IG installation

IgInstaller should be invoked by applications

* Implement pull request comments in IgInstaller

1) Renamed IgInstaller -> IgInstallerSvc for consistency
2) Use field autowiring and @PostConstruct for consistency
3) Use exceptions instead of boolean flags for success indication
4) Use IValidationSuport to generate snapshots of StructureDefinitions
in a version independent way (less maintenance) instead of SnapshotGenerator.java
5) Read IGs for tests from src/main/resources instead of external URL

* IG installation: Wrap exceptions during resource creation in custom class

* IG installation: Improved logging

* IG installation: Search for existing resources in a version independent way
2020-05-24 09:25:46 -04:00
jamesagnew
c97ef7adfc A bit more contributors cleanup 2020-05-23 19:45:00 -04:00
jamesagnew
3bf0628436 Updatyes to devs list 2020-05-23 19:17:33 -04:00
jamesagnew
d24f075cdb Update some orgs 2020-05-23 17:22:59 -04:00
jamesagnew
b60404dbb8 Credit for #1849 2020-05-23 17:18:37 -04:00
Craig Appl
098c3ad737
Fixing a typo in the performance.md server_jpa doc (#1849) 2020-05-23 17:17:51 -04:00
jamesagnew
9192d41448 Credit for #1637 2020-05-23 17:16:19 -04:00
Jacob Stampe Mikkelsen
262a964a31
Add index on CONCEPT_PID on TRM_CONCEPT_PROPERTY to optimize a full-reindex of lucene index which can be needed when running in a docker container where the lucene files are discarded on redeploy. (#1637)
Co-authored-by: James Agnew <jamesagnew@gmail.com>
2020-05-23 17:11:21 -04:00
ianmarshall
35b75f8ffb Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch 2020-05-23 15:54:23 -04:00
James Agnew
e780a8402e
Use R5 snapshot generator (#1862)
* Use R5 snapshot generator

* Snapshot generator reworking
2020-05-23 12:54:19 -04:00
James Agnew
c374383b37
Allow AuthorizationInterceptor to properly authorize GraphQL statements (#1864)
* Allow AuthorizationInterceptor to properly authorize GraphQL statements

* Add changelog
2020-05-22 20:40:37 -04:00
ianmarshall
4d378ee0ed Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
# Conflicts:
#	hapi-fhir-cli/hapi-fhir-cli-jpaserver/src/main/java/ca/uhn/fhir/jpa/demo/CommonConfig.java
#	hapi-fhir-jpaserver-base/pom.xml
#	hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
#	hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/ISearchParamExtractor.java
2020-05-22 17:04:01 -04:00
IanMMarshall
12f80b3da5
Merge pull request #1863 from jamesagnew/im_20200520_cascade_delete
Im 20200520 cascade delete
2020-05-22 16:17:08 -04:00
IanMMarshall
a1a3d9de38
Merge branch 'master' into im_20200520_cascade_delete 2020-05-22 16:11:38 -04:00
jamesagnew
056721829d License header updates 2020-05-22 15:56:14 -04:00
Tadgh
d1b963321a
MVP EMPI implementation (#1857)
EMPI Initial Implementation (still plenty of known gaps)
2020-05-22 15:03:20 -04:00
IanMMarshall
612fb215d6
Update hapi-fhir-jpaserver-api/src/main/java/ca/uhn/fhir/jpa/api/config/DaoConfig.java
Co-authored-by: James Agnew <jamesagnew@gmail.com>
2020-05-22 13:50:42 -04:00
IanMMarshall
51604dab2c
Update hapi-fhir-jpaserver-api/src/main/java/ca/uhn/fhir/jpa/api/config/DaoConfig.java
Co-authored-by: James Agnew <jamesagnew@gmail.com>
2020-05-22 13:50:35 -04:00
IanMMarshall
44869856da
Update hapi-fhir-base/src/main/java/ca/uhn/fhir/interceptor/api/Pointcut.java
Co-authored-by: James Agnew <jamesagnew@gmail.com>
2020-05-22 13:50:24 -04:00
ianmarshall
6a5c23c36b Adding a proposed change log. 2020-05-22 13:45:17 -04:00
ianmarshall
b501a601b7 Some final cleanup minor updates. 2020-05-22 13:36:08 -04:00
ianmarshall
a60e5809b2 Changes to enable adjusting limits on delete conflict handling through configuration. 2020-05-22 10:15:04 -04:00
jamesagnew
e22549e0c4 Bump MySQL JDBC driver version 2020-05-21 21:21:13 -04:00
jamesagnew
5ba7f1525f Test fix 2020-05-21 20:38:11 -04:00
jamesagnew
8ff7d5407a Bump core version 2020-05-21 19:22:28 -04:00
Ken Stevens
2360ed4abe
fix build (#1861) 2020-05-21 19:22:08 -04:00