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7871 Commits

Author SHA1 Message Date
Tadgh 798e960bb8 Merge remote-tracking branch 'origin/master' into issue-2534-new-tx-pointcut 2021-04-26 15:26:34 -04:00
Kevin Dougan SmileCDR 0246e7dd0e
2572 - Add master Branch changes related to backport of fix for #2171… (#2574) 
* 2572 - Add master Branch changes related to backport of fix for #2171 for new 5.3.3 release.

* 2572 - Added some missing changelog folders for the v5.3.1 and v5.3.2 releases.

* 2572 - Added a missing backport changelog entry for the v5.3.1 release.

* 2572 - Added a missing VersionEnum entry for the V5_3_1 release.
 2021-04-26 14:13:42 -04:00
Tadgh 3adc259348 Productioninizg 2021-04-26 14:08:20 -04:00
Tadgh b007fecb1d Add comment 2021-04-26 13:40:40 -04:00
Tadgh 9ecb390dae Move tests to proper class. Fix issue with version referencing 2021-04-26 13:40:11 -04:00
Tadgh 0b8132b1a2 Bump elastic version 2021-04-26 11:04:39 -04:00
Tadgh b200c10ced Merge remote-tracking branch 'origin/master' into issue-2534-new-tx-pointcut 2021-04-26 09:48:30 -04:00
jamesagnew 987264b271 Version bump JENA 2021-04-25 17:38:04 -04:00
James Agnew 2ba1005762
OpenAPI Support (#2560) 
* Start work on OpenAPI

* Fixes

* Work on OpenAPI

* Cleanup

* Cleanup

* More swagger work

* Build fix

* More work

* More work

* Add documentation

* Docs fixes

* Add changelog

* License updates

* Add API

* Cleanup

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_plain/openapi.md

Co-authored-by: patrick-vachon-smilecdr <81274188+patrick-vachon-smilecdr@users.noreply.github.com>

* Work on scripts

* Add docs

* Compile fix

* Work on fixes

* Fix tests

* Test fix

* Test fix

* Build fix

* Tests

* Build fix

* Work on pipeline

* Version bump

* Test fix

* Version bump

* Test fix attempts

* Test fix

* Test fix

* Remove accidentally committed files

* Fixes

* Tets fixes

* Test fix

* Test fix

* Test fix

* Test fixes

* Test fixes

* Test fixes

* License header updates

* test fix

* Test fixes

* Test fix

* Test fixes

* Test fix

* Checkstyle bump

Co-authored-by: patrick-vachon-smilecdr <81274188+patrick-vachon-smilecdr@users.noreply.github.com>
 2021-04-25 15:40:50 -04:00
Tadgh f842c234eb
Merge pull request #2565 from hapifhir/improve-bundle-builder 
Enhance BundleBuilder to support Deletes
 2021-04-23 13:24:04 -04:00
Tadgh 9c19a4c087 Add changelog 2021-04-23 09:11:36 -04:00
Tadgh 596196b3e1 Add licenses 2021-04-23 09:08:41 -04:00
jamesagnew 19ff4862ec Merge branch 'ja_20210420_add_csv_import' 2021-04-21 18:03:58 -04:00
Tadgh a5f81988fc Merge branch 'improve-bundle-builder' into issue-2534-new-tx-pointcut 2021-04-21 16:53:49 -04:00
Tadgh e711dfb07c enhance bundlebuilder to support deletes 2021-04-21 16:44:22 -04:00
Tadgh b7166735f9 Merge remote-tracking branch 'origin/master' into issue-2534-new-tx-pointcut 2021-04-21 12:13:54 -04:00
Tadgh c80d18aca2 Fix test for pointcut 2021-04-21 11:16:10 -04:00
Tadgh ad8921ac4e Add docs, enum, remove prints 2021-04-21 10:39:23 -04:00
Nick Goupinets 80c972a646
Merge pull request #2519 from hapifhir/2515_MDM_survivorship_rules 
2515 mdm survivorship rules
 2021-04-21 09:16:48 -04:00
Tadgh e997d49d42 Additional Tests 2021-04-20 18:25:45 -04:00
Tadgh 3dee0c8ab6 Working in-place bundle sort 2021-04-20 17:48:55 -04:00
Nick Goupinets 4e266462ec Bumped up version due to breaking changes 2021-04-20 16:17:27 -04:00
Tadgh ff2690b74e Add tests for transaction sorting 2021-04-20 14:12:25 -04:00
James Agnew 892ed5a346
Add options to BaseCommand (#2563) 2021-04-20 11:15:37 -04:00
jamesagnew cadca518ec Add options to BaseCommand 2021-04-20 09:14:50 -04:00
Tadgh 1670ed7202 Begin topological sort implementation 2021-04-19 20:01:02 -04:00
Nick Goupinets 1f10a15c35 Merge branch 'master' into 2515_MDM_survivorship_rules 2021-04-19 17:33:53 -04:00
Nick Goupinets 536ca0e73d Code review updates 2021-04-19 16:27:31 -04:00
Tadgh b91a85cc2b
Merge pull request #2561 from hapifhir/issue-2556-bulk-export-bug 
Remove jetbrains annotation
 2021-04-19 11:54:22 -04:00
Tadgh 2ed4b01eb8 Remove notnull 2021-04-19 10:31:16 -04:00
Tadgh 014fa05271 Fix a present annotation 2021-04-19 09:17:35 -04:00
Tadgh 52d161c337 Add checkstyle to prevent future jetbrains annotations from sneaking in 2021-04-19 09:16:35 -04:00
Tadgh 89e56ecb98 Remove jetbrains annotation 2021-04-19 09:14:12 -04:00
Tadgh 48f93f5555
Merge pull request #2558 from hapifhir/issue-2556-bulk-export-bug 
Issue 2556 bulk export bug
 2021-04-18 20:27:18 -04:00
Tadgh c54862e772 Coding around at the speed of sound occasionally causes compilation failures 2021-04-18 18:03:37 -04:00
Tadgh 77e2768a14 Address code review comments. Create new static builder for all partitions SRD 2021-04-18 17:36:55 -04:00
Tadgh 3075a9b5e6 Still minor refactoring 2021-04-16 16:53:23 -04:00
Tadgh f91a4f9576 wip tidy implementaion 2021-04-16 14:18:01 -04:00
Tadgh fad32aa636 Partition management for expired jobs 2021-04-16 11:55:12 -04:00
Tadgh 8035d51e48 Refactor, comment 2021-04-16 11:31:43 -04:00
Tadgh efe5b7b140 Fix package cache usage 2021-04-16 11:24:42 -04:00
Tadgh 7cabcbd772 Fix partition selection for system request details 2021-04-16 11:12:40 -04:00
dependabot[bot] d94611edf6
Bump junit_version from 5.7.0 to 5.7.1 (#2554) 
Bumps `junit_version` from 5.7.0 to 5.7.1.

Updates `junit-jupiter` from 5.7.0 to 5.7.1
- [Release notes](https://github.com/junit-team/junit5/releases)
- [Commits](https://github.com/junit-team/junit5/compare/r5.7.0...r5.7.1)

Updates `junit-jupiter-api` from 5.7.0 to 5.7.1
- [Release notes](https://github.com/junit-team/junit5/releases)
- [Commits](https://github.com/junit-team/junit5/compare/r5.7.0...r5.7.1)

Updates `junit-jupiter-engine` from 5.7.0 to 5.7.1
- [Release notes](https://github.com/junit-team/junit5/releases)
- [Commits](https://github.com/junit-team/junit5/compare/r5.7.0...r5.7.1)

Updates `junit-jupiter-params` from 5.7.0 to 5.7.1
- [Release notes](https://github.com/junit-team/junit5/releases)
- [Commits](https://github.com/junit-team/junit5/compare/r5.7.0...r5.7.1)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-04-15 08:23:30 -04:00
jamesagnew 42c89ccedd Changelog 2021-04-15 08:22:44 -04:00
dependabot[bot] 05b1323638
Bump jarchivelib from 1.0.0 to 1.1.0 (#2553) 
Bumps [jarchivelib](https://github.com/thrau/jarchivelib) from 1.0.0 to 1.1.0.
- [Release notes](https://github.com/thrau/jarchivelib/releases)
- [Commits](https://github.com/thrau/jarchivelib/compare/v1.0.0...v1.1.0)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-04-15 08:21:33 -04:00
dependabot[bot] 9a67f3ee0c
Bump spring_boot_version from 2.4.1 to 2.4.4 (#2550) 
Bumps `spring_boot_version` from 2.4.1 to 2.4.4.

Updates `spring-boot-starter-test` from 2.4.1 to 2.4.4
- [Release notes](https://github.com/spring-projects/spring-boot/releases)
- [Commits](https://github.com/spring-projects/spring-boot/compare/v2.4.1...v2.4.4)

Updates `spring-boot-test` from 2.4.1 to 2.4.4
- [Release notes](https://github.com/spring-projects/spring-boot/releases)
- [Commits](https://github.com/spring-projects/spring-boot/compare/v2.4.1...v2.4.4)

Updates `spring-boot-maven-plugin` from 2.4.1 to 2.4.4
- [Release notes](https://github.com/spring-projects/spring-boot/releases)
- [Commits](https://github.com/spring-projects/spring-boot/compare/v2.4.1...v2.4.4)

Updates `spring-boot-dependencies` from 2.4.1 to 2.4.4
- [Release notes](https://github.com/spring-projects/spring-boot/releases)
- [Commits](https://github.com/spring-projects/spring-boot/compare/v2.4.1...v2.4.4)

Updates `spring-boot-autoconfigure` from 2.4.1 to 2.4.4
- [Release notes](https://github.com/spring-projects/spring-boot/releases)
- [Commits](https://github.com/spring-projects/spring-boot/compare/v2.4.1...v2.4.4)

Updates `spring-boot-configuration-processor` from 2.4.1 to 2.4.4
- [Release notes](https://github.com/spring-projects/spring-boot/releases)
- [Commits](https://github.com/spring-projects/spring-boot/compare/v2.4.1...v2.4.4)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-04-14 20:09:37 -04:00
jamesagnew 120605ebab Add to task 2021-04-14 19:56:25 -04:00
jamesagnew 6b43410514 Add missing constant 2021-04-14 18:50:47 -04:00
jamesagnew b294f7d208 License headers 2021-04-14 18:00:52 -04:00
James Agnew ca2088f3ad
Add framework for Bulk Import (#2538) 
* Start work on bul;k import

* Work on bulk import

* Have batch working

* Working

* Working

* More work

* More work on bulk export

* Address fixmes

* License header updates

* Test fixes

* License header updates

* Test fix

* Test fix

* Version bumps

* Work on config

* Test cleanup

* One more version bump

* Version bump

* CLeanup

* A few additions

* Test fixes

* Test fix

* Test fix

* Migration fix

* Test fix

* Test fix
 2021-04-14 17:41:32 -04:00