58ee76549c
Merge branch 'master' into ja_20200206_multitenancy
2020-03-04 08:19:22 -05:00
5b5ef08500
Merge remote-tracking branch 'remotes/origin/master' into ks-20200302-near-chain
2020-03-03 09:44:52 -05:00
4a160a2df3
Merge branch 'master' into ja_20200206_multitenancy
2020-03-03 09:25:19 -05:00
58b5bd9664
Limit type on _has query ( #1743 )
...
* Limit type on _has query
* Add changelog
2020-03-03 08:28:38 -05:00
3c2c1dab2e
Error on missing profile validation ( #1742 )
...
* Error on missing profile validation
* Add changelog
* Test fixes
2020-03-03 08:28:26 -05:00
bce1716c6c
documentation
2020-03-02 22:13:21 -05:00
8c78e465b1
Defer large term delta adds ( #1736 )
...
* Defer large term delta adds
* Add changelog
2020-02-28 14:41:15 -05:00
5bc554949b
Remove deleted resources from cached search results ( #1732 )
...
* Remove deleted resources from cached search results
* Add changelog
* Add tests
2020-02-28 10:57:26 -05:00
cb9906580e
Index canonical references ( #1728 )
...
* Index canonical references
* Add changelog
* Fix compile error
* Add whitespace
2020-02-25 21:45:46 -05:00
df9e86ec66
Merge branch 'master' into date-match-bug
2020-02-25 17:26:53 -05:00
b2b0ff22b4
Collapse date joins ( #1726 )
...
* Collapse date joins
* Add changelog
* Address review comments
* Add whitespace
* fix test
Co-authored-by: Ken Stevens <ken.stevens@sympatico.ca>
2020-02-25 17:17:13 -05:00
97c98254d0
Extract Common functionality out of CalculateHashesTask, build CalculateOrdinalDatesTask based on it
2020-02-25 16:09:08 -05:00
512af5b87d
Add changelog entry
2020-02-25 14:09:51 -05:00
a05c4ce9eb
Don't thrash delta links ( #1721 )
...
* Don't thrash delta links
* Add changelog
* Remove commented out code
2020-02-19 17:46:54 -05:00
ab8dfa5a03
Avoid multi-term for ElasticSearch ( #1717 )
...
* Avoid multi-term for ElasticSearch
* Add changelog
* Remove redundant code
2020-02-18 16:40:44 -05:00
fba28950ec
Merge pull request #1693 from jamesagnew/im_20200131_remove_circular_dependency_forcedid
...
Changes to schema to loosen dependencies involving Forced ID table
2020-02-18 14:16:09 -05:00
64f07e4dc0
Includes performance enhancement ( #1702 )
...
* Includes performance enhancement
* Add changelog
* Test fix
* Fix typo
* A few coverage cleanups
* Test fix
* Fix changelog
2020-02-18 14:11:48 -05:00
2f4f62b32e
Add change log for Resource and Resource History table changes.
2020-02-18 14:09:59 -05:00
60f16dd91d
Update to 4.3.x core JAR ( #1715 )
...
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Added optionality for adding resource fetcher
* Added coverage that proves invocations
* Bumped version of fhir.core to latest version. Added wrapping of AssumeValidRestReferences
* Start working on converter
* Account for compile errors
* Test fix
* Work no validator
* Work on getting core working
* Add some test coverage
* Many test fixes
Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
2020-02-17 14:28:29 -05:00
ddc7b601ee
Version bump to 4.3.0-SNAPSHOT
2020-02-16 19:23:22 -05:00
4fd80cfca7
Bump to 4.2.0
2020-02-16 19:00:15 -05:00
f7ec41ffc5
Work on multitenancy
2020-02-09 08:40:15 -05:00
b2d2346228
Work on multitenancy
2020-02-07 15:18:06 -05:00
97289b3a1f
Credit for #1692
2020-02-04 17:38:42 -05:00
afd6a2b3a7
Remove entry from atlas
2020-02-01 17:31:57 -05:00
2545fc6e3d
Merge remote-tracking branch 'remotes/origin/master' into ks-20200120-near-search
...
# Conflicts:
# hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_2_0/changes.yaml
2020-01-29 17:06:02 -05:00
beab5b3a9c
Credit for #1689
2020-01-29 05:56:36 -05:00
95254406bc
updated custom narrative generation documentation
...
I found that the documented pattern of
[name].class=[fully qualified classname]
No longer works. The pattern of
[name].resourceType=[ResourceType]
worked for me, I updated the datatype example as well in kind, but I've not used it that way.
Maybe some extended examples for the other property type extensions would be good - e.g. .profile, .style, .contextPath, .narrative, .title
2020-01-29 05:53:45 -05:00
471073103f
Further reduce memory usage in the terminology delta operations
2020-01-28 14:36:15 -05:00
cef58b528e
added _filter to list of search gaps
2020-01-25 18:46:58 -05:00
eff4b294df
Merge remote-tracking branch 'remotes/origin/master' into ks-20200120-near-search
...
# Conflicts:
# hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/4_2_0/changes.yaml
2020-01-25 18:40:55 -05:00
ba0048aade
Resolve memory leak ( #1685 )
...
* Work on memory leak
* Work on term delta uploading
* Resolve memoery leak in terminology service
* Fix cache key
2020-01-25 17:48:26 -05:00
a63c62b2e1
ensure in-memory matching location search for Dstu3 falls back to a db search
2020-01-25 14:35:20 -05:00
78ab01f00b
Change log and check in-memory search for location
2020-01-24 21:56:14 -05:00
dd01688a90
Credit for #1679
2020-01-24 08:32:19 -05:00
39ff698dd2
Parser performance tweaks ( #1660 )
...
* Parser improvements
* Parser tweaks
* Fix test
* Add changelog
* Bump spring mvc version
* Bump spring version
* Test fix?
2020-01-22 14:44:12 -05:00
0718f6b52a
Allow schemalocation in XML validation ( #1677 )
...
* Allow schemaLocation declaration in XML when validating
* Add fix for #1676
2020-01-21 07:14:16 +09:00
c0e929dacb
Copy identifiers to placeholder resources ( #1675 )
...
* Copy identifiers to placeholder resources
* Add tests
* Maven cleanup
* Still messing around with azure
* Adding to logging
* More azure work
* One more attempt
* More messing around with azure
* Test fix
* Another caching attempt
* More work on azure pipeline
* Fix pipeline file
* Keep working on pipeline
* More work on azure
* More azure
* More azure work
* More azure
2020-01-21 06:09:06 +09:00
aad5a30a3d
Support count=0 ( #1670 )
...
* Support count=0
* Fix LGTM issue
2020-01-15 14:52:32 +08:00
201ec34db4
Fix expunge issue when no tags present ( #1671 )
...
* Fix expunge issue when no tags present
* Add changelog
* Try to clean up POMs that are failing CI
* Rework dependencies
* Roll back change that did not work
2020-01-15 14:47:22 +08:00
1390ea3c06
Update FHIR R5 structures to 4.2.0 version ( #1665 )
...
* Work on upgrading core
* Work on R5 updates
* Work on core updates
* Test fix
* Update model version properties file for R5
* Bump core version
* Test fixes
* Add 4.2.0-SNAPSHOT version to versions page in docs
2020-01-14 10:27:01 +08:00
62b50f06ad
Documentation fix
2020-01-14 04:44:10 +08:00
114e8f5f15
Credit for #1655
2020-01-13 13:39:47 +08:00
0c008e11be
License header version bump
2020-01-10 13:15:14 -05:00
ca3b4297e1
FIx #1649 - Account for LOINC file format changes in 2.67
2020-01-03 14:19:22 -05:00
2f3018c56e
Credit for #1603
2020-01-03 13:43:16 -05:00
82921472d4
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2020-01-03 13:43:11 -05:00
e65363f74d
Fix typo.
2020-01-03 12:31:11 -05:00
3edcb04fb1
Add atlas entry
2020-01-03 11:08:48 -05:00
48f7ee5afb
Rolling back previous unnecessary changes.
2019-12-31 09:25:56 -05:00
856993edf8
Moved changelog entry, and added clarifying comments to DateRangeParam.
2019-12-30 15:29:35 -05:00
3788136194
Credit for #1650
2019-12-27 10:02:00 -05:00
baa8eaf728
Merge pull request #1650 from jaferkhan/fix-modifier-typo
...
Correct typos in code snippets across three different files
2019-12-27 10:00:33 -05:00
4c923c6e92
Atlas update
2019-12-27 08:16:17 -05:00
27a084f061
Correct typo in code's comment. Fixes gh-1617
2019-12-27 16:25:45 +05:00
8039d68608
Fixed various typos and other minor issues in docs
2019-12-26 01:36:18 +05:00
35fbe69589
Add more text to the incomplete paragraph. Fixes gh-1638
2019-12-25 20:31:57 +05:00
ecb8da7aea
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-12-21 11:57:51 -05:00
5aa961ade7
Docs tweak
2019-12-21 11:56:31 -05:00
c03e470fcd
Credit for #1588
2019-12-21 11:37:02 -05:00
736b066884
Update David's email
2019-12-21 09:35:44 -05:00
8a1fa3ea3c
Merge pull request #1643 from jamesagnew/ja_20191219_improve_validator
...
Handle standalone validation of custom VS/CS
2019-12-19 16:38:29 -05:00
d050b7b3c2
Add changelog
2019-12-19 15:03:30 -05:00
d7240019c3
Points update from Jens
2019-12-18 19:26:48 -05:00
5db231bae1
Add style guide
2019-12-18 05:50:55 -05:00
f77428c05b
Update text on changelog
2019-12-17 11:16:16 -05:00
04b79a7b6f
Documentation updates
2019-12-16 18:52:28 -05:00
e1f2d044ed
Add errorprone back into build
2019-12-15 09:42:51 -05:00
89f819ae74
A bit more work on docs
2019-12-15 08:07:23 -05:00
ba8f50f0c8
Docs updates
2019-12-14 18:19:09 -05:00
a1a50ad257
Fixed typo in docs
2019-12-14 18:55:49 +05:00
d232f4267e
Docs tweak
2019-12-12 09:33:00 -05:00
2054b409ff
Fix compile error
2019-12-10 16:47:50 -05:00
8049215d07
A couple more docs updates
2019-12-10 16:41:43 -05:00
d277d3fed5
Docs updates
2019-12-10 16:10:09 -05:00
bd1b41ff82
change out-of-order-permitted from environment variablet to flag to work like dont-use-flyway
2019-12-09 16:44:24 -05:00
5117b93add
document new environment variable
2019-12-09 11:49:43 -05:00
c1aec7c0e4
document new environment variable
2019-12-09 11:45:30 -05:00
5e69fcdc5f
Fix compile error
2019-12-06 17:06:53 -05:00
438ef70fdb
Reuse connections in brute force migrator
2019-12-06 16:52:26 -05:00
d91617e923
Account for review changes ( #1623 )
2019-12-05 18:01:45 -05:00
b2e2cb88d7
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-12-03 10:53:19 -05:00
f277819830
Add map points JSON
2019-12-03 10:53:06 -05:00
f58fba6f04
Some test cleanup ( #1616 )
...
* Some test cleanup
* Add test
* More test logging
* More docs cleanup
* Add test logging
2019-12-02 11:00:18 -05:00
86bd9a28fe
Fix to valueset expansion logic ( #1613 )
...
* Fox to valueset expansion logic
* Work on docs
* Docs tweaks
* Docs tweaks
* Fix test
* Remove unused class
* Add changelog
2019-12-01 21:21:19 -05:00
2115721940
Corrected typos and fixed grammatical mistakes in documentation
2019-12-01 03:35:35 +05:00
5f803f7e68
Documentation updates
2019-11-26 02:00:22 -03:00
5becb613fe
Add some documentation
2019-11-24 19:09:34 -05:00
497a96ae68
Version bump for next round of development
2019-11-12 22:09:21 -05:00
f99ad981b5
Version bump to 4.1.0
2019-11-12 16:08:20 -05:00
aa0301084b
Don't succeed validation on unknown codesystem ( #1575 )
...
* Don't succeed validation on unknown codesystem
* Test fixes
* Work on error messages
* Work on code validation API
* work on tests
* Work on validation
* Test fix
* Update DSTU3 validation reources
* Upgrade structures
* Test fixes
2019-11-12 14:35:49 -05:00
969174136e
Rename org.hl7.fhir.convertors package as it's already used
2019-10-24 12:23:38 -05:00
79e97b24e5
Fix #1481 - Add missing dependency to hapi-fhir-docs
2019-10-17 13:57:58 -04:00
12a74e6cbc
Fix term uploads and validate against valueset recalculation ( #1540 )
...
* Start refactoring terminology delta operations
* Work on delta operations
* Work on concept saving
* Split term services into smaller services
* Work on term delta operations
* Work on term svcs
* Work on term operations
* More work on delta uploader
* Add a test
* Wrk on term service
* Fix compile error
* Some refactoring
* Test fix
* Test fix
* Test fixes
* Test fix
* Test fixes
* Test fixes
* Work on delta
* Work on tests#
* Test fixes
* Improve resequencing logic
* Build test
* More testing
* More build testing
* More work on tests
* CHange test logging
* Fix term service PID issue
* Update src/changes/changes.xml
Co-Authored-By: Diederik Muylwyk <diederik.muylwyk@gmail.com>
* Address review comment
* Some cleanup
* Test fix
* Fix some tests
* Work on upload command
* Test fixes
* Work on validation fixes
* Work on validation against pre-expansion
* Work on direct validation
* A bit of cleanup
* Add some javadoc
* Force another build
* Test fixes
* Fix tests
* Fix tests
2019-10-15 21:31:29 -04:00
c8ce07c40e
Deprecate redundant IVersionSpecificBundleProvider method
2019-09-30 09:45:31 -04:00
663431f571
Fix docs issue
2019-09-27 16:57:14 -04:00
27c637b8d7
Docs fix
2019-09-27 14:02:42 -04:00
5f563057c0
Set up CI with Azure Pipelines ( #1502 )
...
* Set up CI with Azure Pipelines
[skip ci]
* Update azure-pipelines.yml for Azure Pipelines
* Skip tests for a build
* Work on pipeline
* Update azure-pipelines.yml for Azure Pipelines
* Interceptors docs
* Test fix
* Disable releases from snapshot repo
* Try disabling jitpack
* Fix dependency issue
* A couple of test fixes
* Change to trigger a build
* Force a change to trigger a build
* Force a build
* FIx test
2019-09-24 14:38:38 -04:00
004f42cdcc
Clean up docs
2019-09-23 15:56:02 -04:00
2bcb1c9c1c
Work on docs
2019-09-23 09:56:29 -04:00
e05ea676e9
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-09-22 15:55:06 -04:00
520b50dfdc
Ongoing work on docs migration
2019-09-22 15:54:52 -04:00
936587df6e
Work on migrating docs
2019-09-22 15:52:49 -04:00
0a5eca0821
Work on docs
2019-09-22 13:25:50 -04:00
d43c1760ef
Adjust docs
2019-09-22 08:59:54 -04:00
58b7e3a923
Start splitting docs into separate project
2019-09-22 08:58:17 -04:00
James Agnew
Ken Stevens
Gary Graham
IanMMarshall
ianmarshall
dionmcm
Diederik Muylwyk
Jafer Khan
John Poth
Stig Rohde Døssing