Commit Graph

4187 Commits

Author SHA1 Message Date
James Agnew 7ba07d9f02 Avoid search failure on Oracle when performing very large includes 2019-01-04 09:11:11 -05:00
James Agnew 31b8a392b7 Better CLI error handling for unit tests 2019-01-03 12:57:18 -05:00
James Agnew 4f16fea580 Fix compile error 2018-12-28 12:11:19 -05:00
James Agnew 1bfa29bbcc Site updates 2018-12-28 11:42:21 -05:00
James Agnew c462b5ba3e Prep new site version 2018-12-28 09:16:48 -05:00
James Agnew 14a132a937 Squashed commit of the following:
commit 9659655830
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Dec 27 17:54:25 2018 -0500

    Finish sync

commit 70da25b76f
Author: jamesagnew <jamesagnew@gmail.com>
Date:   Thu Dec 27 10:32:51 2018 -0500

    Work on RI4 sync
2018-12-27 17:58:47 -05:00
James Agnew 6eb4c28e7c More merging 2018-12-27 17:58:08 -05:00
jamesagnew 49e418edf0 Adjust migrator to handle updated Hibernate version 2018-12-23 15:11:44 -05:00
Ken Stevens fedc59a8d6 Subscription module startup changes (#1154)
* Reorganizing packages and dependencies to support standalone subscription running within a CDR container where all hapi modules are on the classpath.

* EXPERIMENTAL: Moved Subscription registry out of interceptor and introduced ISubscriptionLoader that will be either a Database or FhirClient loader.

5 tests fail.  Looks like we're getting too many matches--likely because there is now just one list of subscriptions instead of one list per interceptor.

* Created ActiveSubscription and moved cache bits into it

* Compiles.  Next step is get app context to load.

* Application context loads.  Now fix NullPointer.

* All subscription tests pass

* FIXME cleanup

* jpa-subscription tests

* fixed config so other module tests work

* MAJOR MILESTONE: All hapi-fhir tests pass.

updated READMEs in example projects

* Moved ExecutorQueue stuff out into its own class

* Organize Imports

* FIXME cleanup

* Null check -> Optional

* Add test and supporting code to validate SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION behaviour

* Added SubscriptionCheckingSubscriber test that works without a database

* Moved a few beans to @ComponentScan

* Replaced use of beanFactory with concrete factory classes

* Switched test to use subscribablechannel

* Added SubscriptionLoaderFhirClientTest

* Undid changes that caused SearchParamProviderFhirClientTest to revert to the Database version.  It's now calling the FhirClient version again.  (oops)

* Confirm that our SubscriptionProviderFhirClient works with a live fhir client

* Organize imports

* Organize imports

* Register interceptors with DaoConfig instead of RestServer.
Also, Rename @VisibleForTesting methods with ForUnitTest

* Ready to go

* organize imports

* add processing queue

* Fixed interface implementation names

* Fix triggering service so it uses new subscriptionmatcherinterceptor

* fixed example

* Renamed "Database" classes to "Dao"

* Tightened up StoppableSubscriber API

* final code review

* processing -> matching naming change

* fix required by CDR

* oops

* Updated changes.xml

* Renamed subscriptioncheckingsubscriber to subscriptionmatchingsubscriber

* Renamed subscriptioncheckingsubscriber to subscriptionmatchingsubscriber

* CDR integration now works

* Changing subscribable channel abstraction layer in preparation for supporting more types of subscribable channels

* Add interface over both types of messages put on queues

* cosmetic change

* added subscription support for r4

* fixed again

* oops

* self code-review
2018-12-23 13:52:26 -05:00
James Agnew 298cf96084 Two more thymeleaf fixes 2018-12-23 13:49:50 -05:00
James Agnew b8ae0e2f73 Adjust for thymeleaf security fix 2018-12-23 13:41:15 -05:00
James Agnew 9d3904ef3e Fix #1142 - Upgrade Spring Boot to latest version 2018-12-23 13:10:03 -05:00
James Agnew a0cb7edd08 Version bump a few dependencies 2018-12-22 20:13:03 -05:00
James Agnew 1311ef4157 Revert to JDK9 to build on travis temporarily 2018-12-21 09:26:19 -05:00
jamesagnew 12b95deafb Upgrade to using JDK11 for build 2018-12-21 07:34:10 -05:00
jamesagnew f0eda57048 Add missing dependency to search param project 2018-12-21 07:06:32 -05:00
jamesagnew ea80d03a74 Credit for #1051 2018-12-21 05:42:39 -05:00
Corina Dalaban d46878be86 unit tests for head operation
-reverting the removal of the unit test but with the correct status code
-added unit test for a valid patient
2018-12-21 05:40:35 -05:00
Corina Dalaban 65a54bfe29 the test for head operation is not needed anymore in the
unsupportedhttpmethods
2018-12-21 05:40:35 -05:00
Corina Dalaban 3a3d503772 head operation should return 200OK response code instead of 400
BadRequest
2018-12-21 05:40:35 -05:00
James Agnew 5824826eff Add support for booleans in the migrator 2018-12-20 10:24:17 -05:00
jamesagnew 6e0a9525a1 Remove dependency on public test server in unit test 2018-12-20 06:28:01 -05:00
jamesagnew 54bb1508db Changelog for #980 2018-12-20 06:08:10 -05:00
David Gileadi 23a09ef7d7 Support parsing valueReference 2018-12-20 06:02:07 -05:00
James Agnew f5f9dff391 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2018-12-18 14:09:20 -05:00
James Agnew bca958564f Just a javadoc change 2018-12-18 14:09:11 -05:00
jamesagnew 86b3e45a32 License header updates 2018-12-18 14:08:01 -05:00
Ken Stevens 84a34eb3c9
Subscription module support (#1147)
* Reorganizing packages and dependencies to support standalone subscription running within a CDR container where all hapi modules are on the classpath.

Moved Subscription registry out of interceptor and introduced SubscriptionLoader

* Created ActiveSubscription and moved cache bits into it

* Moved ExecutorQueue stuff out into its own class

* Add test and supporting code to validate SubscriptionConstants.EXT_SUBSCRIPTION_RESTHOOK_DELIVER_LATEST_VERSION behaviour

* Added SubscriptionCheckingSubscriber

* Moved a few beans to @ComponentScan

* Replaced use of beanFactory with concrete factory classes

* Switched test to use subscribablechannel

* Added SubscriptionLoaderFhirClientTest

* Confirm that our SubscriptionProviderFhirClient works with a live fhir client

* Register interceptors with DaoConfig instead of RestServer.
Also, Rename @VisibleForTesting methods with ForUnitTest

* Fix triggering service so it uses new subscriptionmatcherinterceptor

* Renamed "Database" classes to "Dao"

* processing -> matching naming change
2018-12-18 13:09:06 -05:00
James Agnew dc1f48ffed Test fix 2018-12-14 14:13:02 -05:00
James Agnew f978bc3039 Always apply new search params to any resource reindexing 2018-12-14 13:43:25 -05:00
James Agnew 11b8304cb4 Fix case sensitivity issue 2018-12-13 08:31:35 -05:00
jamesagnew 8d195aedf0 Credit for #917 2018-12-13 05:36:19 -05:00
hdconradi 89ede0e524 Extension domains configuration for the fhr instance validator (#917)
* Fix the url of the StructureDefinition extensions

http://hl7.org/fhir/tools/StructureDefinition/ -> http://hl7.org/fhir/StructureDefinition/
That makes the entry for the structuredefinition-expression superfluous.

The url behind IG_DEPENDSON_PACKAGE_EXTENSION does not point is not (yet?) valid too.

* Add ability to configure custom extension domains.

* Testing the extension domains configuration

* Fix obvious bug when determining resource name

The for loop was completely superfluous beforehand.
Either fix it as e.g. in this patch or remove it.

* small improvements and TODO's for possible NPE's

- javadoc see
- use diamond operator for generics
- remove throws clause when exception is not thrown
- add TODO's for some cases a NPE might occur.
  My knowledge of the context is not sufficient to suggest the proper
  way to solve this.
2018-12-13 05:32:47 -05:00
Łukasz Dywicki 1afe36e60a Sources and resource generator mojo which doesn't use value sets. (#852)
* Resource and sources generator mojo which doesn't use value sets.

* Avoid unecessary reference to javassist.
2018-12-13 05:28:16 -05:00
jamesagnew 81e8131ffc Fix broken test 2018-12-09 19:36:03 -05:00
James Agnew 67f5ba6aa0 Also allow ServeMediaResourceRawInterceptor to handle vread requests 2018-12-09 14:29:40 -05:00
James Agnew 19954fa252 Resolve failing test 2018-12-09 14:09:12 -05:00
James Agnew b442982310 Add media interceptor 2018-12-08 18:49:58 -05:00
James Agnew 5a80e70d93 Correctly reindex string indexes 2018-12-06 14:44:42 -05:00
James Agnew a5b1f684f7 Try to prevent intermittent test failure 2018-12-05 19:28:37 -05:00
James Agnew cbaa39fd63
Try to reuse index rows in JPA server (#1133)
* Try to reuse index rows in JPA server

* Address review comments

* One more test fix

* One more test
2018-12-05 19:25:59 -05:00
James Agnew 31f6a0b22b One more bit of logic for the reindexer 2018-12-04 20:29:20 -05:00
James Agnew d150340d53 One more test fix 2018-12-04 19:55:14 -05:00
James Agnew 29af6160d6 Fix typo 2018-12-04 18:54:26 -05:00
James Agnew 1d3bcd9e8f Fix indexing bug 2018-12-04 18:50:49 -05:00
James Agnew d9ce0ebf7c Unit test fix 2018-12-04 18:24:19 -05:00
James Agnew 8c7f249a21 Migrator enhancements and adjust reindexer to account for missing
versions
2018-12-04 17:33:29 -05:00
James Agnew c484c69664 Better error message for unqualified search parameter types 2018-12-03 13:14:10 -05:00
jamesagnew 82f40f0423 License header updates 2018-12-03 05:22:10 -05:00
Ken Stevens 6baee4dc3f
Standalone subscription (#1125) 2018-11-30 17:19:16 -05:00