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2131 Commits

Author SHA1 Message Date
David Maplesden
c8c8ab6881 Add modifier extensions to tha actual modifier extensions collection 2019-09-19 20:38:30 -04:00
David Maplesden
946f3a1732 Cut short traversal when finding top-level base references 2019-09-19 20:38:30 -04:00
David Maplesden
4021fccf3b We only need to extract the existing contained resources once 2019-09-19 20:38:30 -04:00
David Maplesden
1f253856cf Optimise for encoding String primitive data types 
We typically have many more string primitives than anything else
 2019-09-19 20:38:30 -04:00
David Maplesden
8b84b8ffea Cache the composite children that need encoding to improve performance 2019-09-19 20:38:30 -04:00
David Maplesden
5120fe795e Dramatically improve the performance of containResourcesForEncoding 
We do this by avoiding the double processing of contained resources when
looking for resources to contain
 2019-09-19 20:38:30 -04:00
jamesagnew
6475146bc9 Add license headers 2019-09-19 18:08:21 -04:00
James Agnew
eddb98084d Move PreferReturnEnum back to original location to avoid regressions 2019-09-19 15:48:58 -04:00
James Agnew
2be63a1650 Test fixes 2019-09-19 09:45:07 -04:00
James Agnew
30dfde645b Upgrade to Fontawesdome 5 and prevent uploading resources with binary 
storage extensions
 2019-09-19 05:28:05 -04:00
James Agnew
6b21e8cd90 Add some testing to the bulk export service 2019-09-18 14:43:00 -04:00
James Agnew
4a751cbfc5
Integrate Bulk Export (#1487) 
* Start working on subscription processor

* Work on new scheduler

* Test fixes

* Scheduler refactoring

* Fix test failure

* One more test fix

* Updates to scheduler

* More scheduler work

* Tests now all passing

* Ongoing work on export

* Ongoing scheduler work

* Ongoing testing

* Work on export task

* Sync master

* Ongoing work

* Bump xml patch version

* Work on provider

* Work on bulk

* Work on export scheduler

* More test fies

* More test fixes

* Compile fix

* Reduce logging

* Improve logging

* Reuse bulk export jobs

* Export provider

* Improve logging in bulk export

* Work on bulk export service

* One more bugfix

* Ongoing work on Bulk Data

* Add changelog
 2019-09-17 16:01:35 -04:00
James Agnew
08835c1615 FIx a failure in FhirTerser when visiting custom types 2019-09-13 09:11:47 -04:00
Ken Stevens
abef4455eb done 2019-09-09 17:22:07 -04:00
Ken Stevens
7cfbf710fe Merge remote-tracking branch 'remotes/origin/master' into ks-in-memory-date-compare 
# Conflicts:
#	src/changes/changes.xml
 2019-09-09 14:46:25 -04:00
Ken Stevens
9e83f1d40a changelog 2019-09-09 14:22:42 -04:00
James Agnew
722c7a8211 Work on GraphQL updates 2019-09-06 14:56:17 -04:00
jamesagnew
1ef70a0fca Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-03 07:02:09 -04:00
jamesagnew
8b09b3f3eb Rename config enum for consistency 2019-09-03 07:01:36 -04:00
Diederik Muylwyk
9f7cf3923b
Merge pull request #1458 from jamesagnew/1457-valueset-pre-expansion-need-to-account-for-existing-valuesets-and-user-assigned-ids 
Resolve "ValueSet pre-expansion - need to account for existing ValueSets and user-assigned IDs."
 2019-08-30 10:48:39 -04:00
Diederik Muylwyk
8ef9c61b83 Address review comments; improve logging. 2019-08-30 10:47:21 -04:00
Diederik Muylwyk
e03d6a5d47 Fixed handling of pre-expansion in light of pre-existing, non-pre-expanded ValueSets. 2019-08-29 18:09:30 -04:00
James Agnew
c5a88444b6 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-08-29 14:00:37 -04:00
James Agnew
956bb39327 Resolve an inefficient regex expression 2019-08-29 13:59:31 -04:00
Diederik Muylwyk
b41926307c Completed work on large ValueSet expansion support; ready for review. 2019-08-23 17:40:45 -04:00
Diederik Muylwyk
890555a77d Incremental work on large ValueSet expansion support; transaction boundaries need to be broken up. 2019-08-23 11:46:32 -04:00
Diederik Muylwyk
97a235ddfc Merging master into working branch. 
# Conflicts:
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/DaoConfig.java
 2019-08-22 14:02:56 -04:00
James Agnew
9428430822
Add support for Resource.meta.source (#1438) 
* Work on indexing source

* Work on tests

* Refactor query count tests

* Unit test fixes

* Add some tests

* DAO fix

* Fix compile error

* Unit test fix

* Cleanup

* Test fix

* Fix compile error

* One more test fix
 2019-08-21 11:17:43 -04:00
James Agnew
ce44115152
Handle cascading deletes correctly with circular references (#1435) 
* Handle cascading deletes correctly with circular references

* A bit of cleanup

* Address review comments

* FIx some javadocs

* Fix an incorrect message
 2019-08-20 10:08:34 -04:00
Diederik Muylwyk
8590e0ca4d Merging master into working branch. 
# Conflicts:
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/DaoConfig.java
 2019-08-19 02:28:30 -04:00
Diederik Muylwyk
dfd098c374 Incremental work on large ValueSet expansion support; added use of terminology tables when expanding. 2019-08-19 02:26:12 -04:00
James Agnew
57c6064d89 Another test fix 2019-08-17 12:21:08 -04:00
James Agnew
74c83f6148 Test fixes 2019-08-17 12:01:04 -04:00
James Agnew
1e07fcd2b3
Fix an unintended regression in #1357 (#1429) 
* Start working on a tweak to #1357 - Not yet complete

* Tweaks to avoid an unintended regression from #1357
 2019-08-15 08:35:50 -04:00
Ken Stevens
f29c37a654 added IBaseReference constructor to TokenParam 2019-08-14 15:33:50 -04:00
jamesagnew
2d35db877e Add version constant 2019-08-14 15:03:05 -04:00
jamesagnew
e1b43d811f Version bump to 4.1.0-SNAPSHOT 2019-08-14 14:06:06 -04:00
jamesagnew
3f22456b0f Bump version to 4.0.0 2019-08-14 11:06:26 -04:00
James Agnew
b127867ef7 Fix responsehighlighterinterceptor to work with graphql 2019-08-13 18:00:30 -04:00
James Agnew
01a6aa8f5b Test fix 2019-08-13 14:54:35 -04:00
James Agnew
b4fece0ae9 Add interceptor hook for graphql calls 2019-08-13 14:46:50 -04:00
James Agnew
ef7182228f One more fix for #1399 2019-08-12 18:07:09 -04:00
James Agnew
c04f1d15d8 Fix #1399 - Issue with DiagnosticReport R4 narrative generation template 2019-08-12 17:17:45 -04:00
James Agnew
301a8f8432
Merge #1146 - Filter implementation (#1220) 
* Initial commit of _filter keyword implementation.

* - Completed all search parameter types for _filter.
- Implemented handling for _has, _id, _security, language, _profile, _security, and _tag.

* - Changes to support "ne" matching on resource ID for _filter

* Implemented language

* Commit/push before creation of pull request

* Ongoing merge work

* Ongoing merge work

* Merge master in

* Test fix
 2019-08-12 11:59:33 -04:00
James Agnew
bfaf617142 Add some more chars to the sanitizer function 2019-08-12 08:16:38 -04:00
James Agnew
4f5a2b3c0c Add fhirType() to IBase to bring it in line with what the core structures do 2019-08-09 09:44:20 -04:00
jamesagnew
4e1bbe681a Bump supported PGSQL driver 2019-08-08 15:12:29 -04:00
James Agnew
dd0cb10dbb
validate operation ignores parameter profile (#1417) 
* This should be working now - need to check tests

* Add a changelog and some docs

* One more test fix

* Tests should be passing

* Fix compile

* Test fixes

* Ignore outdated DSTU2 validation test
 2019-08-07 15:31:59 -04:00
Ken Stevens
1b17097f62 a couple more int -> long 2019-08-07 13:35:27 -04:00
James Agnew
6aa7916ba7
Merge pull request #1415 from jamesagnew/ks-inmemory-id-match 
in-memory id match
 2019-08-07 08:31:38 -04:00