95f00e1c94
Fix NPE in tests
2018-10-04 08:33:40 -04:00
b265c0281b
Expand search range when searching by date
2018-10-03 21:31:01 -04:00
5d5ee78873
API cleanup following JPA search performance enhancements
2018-10-03 07:43:01 -04:00
62d6771814
Use a select count query for summary count searches in JPA server
2018-09-29 21:58:14 -04:00
3e445faf47
Squashed commit of the following:
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commit df641506885e09e63f80efc6c658d01a1a3a8142
Author: James Agnew <jamesagnew@gmail.com>
Date: Sat Sep 29 13:47:22 2018 -0400
Shrink validation resources
commit 4c1550eafa26f4235b4b8804741aecc03276b5c6
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 22:45:28 2018 -0400
Updates to get R4 working
commit 8332f15291006691ed9b07ead3e3524b0fc85510
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Sep 28 09:02:13 2018 -0400
Ongoing work on gettign R4 working
commit f7146cab7aed937bb625a8aec95744d76db00041
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Sep 28 05:21:01 2018 -0400
More work on sync
commit f48de4a10b1bab2584fee813017d9b27b237bfa9
Merge: 9e4f3cc722 aacb78b779
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:29 2018 -0400
Merge branch 'sync_r4' of github.com:jamesagnew/hapi-fhir into sync_r4
commit 9e4f3cc722668aae31a77b19bf9b032af3ae01b0
Author: James Agnew <jamesagnew@gmail.com>
Date: Thu Sep 27 20:11:19 2018 -0400
Fix compile error
commit 7ec29e0ceda8f9013cbabb95767cbe15b4b81303
Merge: 23f7517325 002c4b3ff7dfb4de86f1
2018-09-29 13:48:35 -04:00
ea5cf9f956
Fix the null pointer problems in the DataRangeParam class
2018-09-27 11:25:56 +02:00
734835de96
Add some test demonstrating null pointer problems in the DateRangeParam class
2018-09-27 11:25:56 +02:00
c0051f309b
Avoid NPE on parser
2018-09-21 09:48:18 -04:00
dfb4de86f1
License updates
2018-09-20 05:16:15 -04:00
706e004b9d
Bump to 3.6.0-SNAPSHOT
2018-09-19 10:24:48 -04:00
321e88c811
License header updates
2018-09-14 05:25:07 -04:00
ce6a9dbc36
Fix regression from new jetty version
2018-09-11 08:27:34 -04:00
daef975734
Version bump to 3.5.0
2018-09-08 07:22:21 +08:00
f5d567cd00
Work on migrator
2018-09-08 03:30:35 +08:00
0f7c4219cb
Merge branch 'master' into jpa_migration
2018-09-02 06:05:11 +08:00
f4a21eadda
Fix this issue
2018-09-01 14:38:52 +08:00
07cfed14b8
Work on migrator
2018-08-27 08:21:20 -04:00
df651c830e
Remove dynamic mode
2018-08-19 17:35:08 -04:00
bc1ee1f9dc
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-08-13 11:54:36 -04:00
ea1f17762e
Don't apply last updated to includes
2018-08-11 12:20:07 -04:00
64b3b64208
License header updates
2018-08-06 19:06:09 -04:00
4eb3281fa6
Merge branch 'client_enhancements'
2018-07-30 18:34:49 -04:00
709a5dbd0a
Merge pull request #965 from jbalbien/fixBundleUtilBug
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fix bundle util bug
2018-07-30 09:45:09 -04:00
d6293cf9b3
Merge branch 'client_enhancements'
2018-07-30 09:42:38 -04:00
db0f082222
Merge pull request #996 from anamariaradu10/master
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Changes regarding behavior for Prefer header
2018-07-30 09:16:20 -04:00
0f1724ac0a
Credit and a unit test for #912
2018-07-30 05:48:38 -04:00
d50dda19ae
Merge pull request #912 from InfiniteLoop90/911-contains-modifier
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Fixes #911 - Adds support for :contains modifier
2018-07-30 05:39:27 -04:00
fc9f2ec0fb
FIx test issue
2018-07-29 18:20:09 -04:00
518092cbd4
More updates
2018-07-29 17:10:26 -04:00
3a5556006b
Merge branch 'master' into master
2018-07-27 16:59:52 +03:00
9c39733aff
Fixed issues
2018-07-27 16:48:44 +03:00
75a68a0332
Unit test fix
2018-07-26 18:58:23 +07:00
a4e4111376
Fix a unit test
2018-07-26 18:08:59 +07:00
3c80238f0e
Ongoing work on interceptors
2018-07-24 17:22:21 +07:00
23083a9283
Improvements to client and SP indexing in JPA server
2018-07-23 17:37:49 +09:00
b4aa4c0e89
Add protection against HTML injection attacks
2018-07-19 08:56:22 -04:00
401a4cd738
Clean up concept reindexing
2018-07-15 17:18:07 -04:00
43ac912033
Clean up terminology uploading
2018-07-15 15:22:52 -04:00
6d83edabb6
License header updates
2018-07-01 20:59:04 -04:00
a2d6435597
adding contentType matching independent of Charset to non-strict method
2018-06-25 10:51:05 +02:00
b1e09fcdf7
Merge pull request #1007 from jamesagnew/1006-Writing-structured-Binary
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1006 writing structured binary
2018-06-21 18:03:14 +02:00
8bd1313492
removed unused import
2018-06-21 14:56:38 +02:00
f470653ba4
fixing tests
2018-06-21 11:50:58 +02:00
ef9f97a576
fixes #1006
2018-06-20 17:26:23 +02:00
ed0b5f54a5
More authorizationinterceptor tweaks for better security
2018-06-12 21:52:01 +08:00
dc476aeeea
In my opinion these changes should be made in order to have the behavior
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for the Prefer header values as the one explained in the official
documentation from https://www.hl7.org/fhir/http.html
2018-06-12 14:04:05 +03:00
9498247082
Allows the Cache-Control Header in CORS header for jpa-example-server & CLI
2018-06-04 16:12:31 +02:00
d819d685ee
Test fix
2018-05-30 09:57:41 -04:00
0e2c57fa60
Bumping version.
2018-05-28 17:44:38 -04:00
2871920734
Preparing release.
2018-05-28 10:45:47 -04:00
d417bf1225
fix bundle util bug
2018-05-25 09:19:59 -07:00
a3687e446e
Correctly handle missing search params with new indexing infrastructure
2018-05-23 11:42:38 -04:00
2e74ad72cb
Improve timeouts on test ports
2018-05-23 08:52:24 -04:00
2f2900e837
Improve indexing on JPA server in anticipation of a new indexing
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strategy in HAPI FHIR 3.5.0
2018-05-23 08:09:57 -04:00
cadb51d36c
Merge pull request #875 from RuthAlk/fix_codeableconcept_narrative
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Fix error in narrative for CodeableConcept
2018-05-23 06:38:08 -04:00
851ce85ac6
Merge branch 'master' into wip-DateRangeParam
2018-05-23 06:03:26 -04:00
4d93b78c24
Credit for #836
2018-05-22 08:44:17 -04:00
3a68bc19e7
Merge pull request #836 from RuthAlk/include_patch
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Fix problem with _include=MedicationRequest:medication
2018-05-22 08:40:08 -04:00
4fd868afae
Credit for #946 and add extensions to the CLI uploader
2018-05-16 19:32:12 -04:00
a3ff08d9ec
Replace phloc with ph for #775 ( #930 )
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* Replace phloc with ph
* Enable schematron tests
* Make HAPI-FHIR ph-schematron on OSGI
* Work on getting tests passing
* Another test fix
* Fix up transaction handling for DSTU2
* Add changelog
* Avoid double transaction
* Dont use readonly
* One more test fix
* Update to snapshow build
* Resolve a circular dependency
* Try to fix tests
* Solve recurring NPE in DSTU2 tests
* Fix one more test
* Test fix
* More test threading fixes
* One more attempt to get tests passing
* Refactoring for tests
* Refactoring for tests
2018-05-14 17:38:40 -04:00
ccb859fdbe
FIxes to get the synced build working
2018-05-13 08:08:34 -04:00
150f27a9ca
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-05-12 19:40:31 -04:00
3d762b984b
Sync to R4 definitions
2018-05-12 19:35:42 -04:00
f1ba0016b2
Improve the error message thrown by JPA server
2018-05-11 17:03:48 -04:00
b17eebd8d2
Squashed commit of the following:
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commit 2be11651c2b3bb5f9052f6b1082ba481a69c265f935938e92c43568a1f8de95894e6439393fb8f4f437f5051e420c51add4f7bf2b0a0e9adc73e75c9
2018-05-10 11:53:32 -04:00
d97fb8f5cf
709 the conceptmap operation called translate needs to be implemented ( #923 )
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The ConceptMap operation $translate has been implemented.
2018-05-10 10:52:56 -04:00
5bd191d192
FIx some failing tests
2018-04-28 13:21:48 -04:00
593a705365
Performance enhancements on the CapabilityStatement generator for JPA
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server
2018-04-28 11:06:42 -04:00
e299b062a6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-04-24 19:14:56 -04:00
f1db751d1e
Update headers
2018-04-24 19:14:33 -04:00
09b1f547d0
Add expunge
2018-04-24 15:11:00 -04:00
07e7af746f
Work on expunge operation
2018-04-22 22:03:23 -04:00
591539cf13
Add expunge method
2018-04-22 18:34:56 -04:00
8c889267e5
One more parser fix
2018-04-18 06:20:11 -04:00
162069776a
Correctly handle encoding contained resources where some have user
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assigned IDs and some do not
2018-04-17 18:26:06 -04:00
9013e44ba0
Fix a couple of broken compile issues
2018-03-31 06:08:49 -04:00
ac8e412e49
Fixes #911 - Adds support for :contains modifier
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Adds support for the :contains modifier in StringClientParam.
2018-03-30 23:49:06 -05:00
180336e076
Sync to master
2018-03-29 06:54:24 -04:00
53c2d8a38d
Merge branch 'master' into loinc_loader_update
2018-03-29 06:21:55 -04:00
418e82032f
Prep for 3.3.0
2018-03-29 05:48:13 -04:00
94b880fd4d
Remove accidentally committed useless file
2018-03-28 10:13:51 -04:00
b56d65ef5b
Merge pull request #871 from johnpoth/hapi-fhir-osgi
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Implement #826 - add OSGI support and Apache Karaf features with inte…
2018-03-27 06:06:34 -04:00
d9fcf1ef54
Merge pull request #864 from splatch/master
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Avoid unecessary reference to javassist.
2018-03-23 06:49:59 -04:00
9125a78f33
Avoid unecessary reference to javassist.
2018-03-20 15:39:33 +01:00
308ac63a77
Merge branch 'master' into loinc_loader_update
2018-03-20 07:53:41 -04:00
9c5e32d7eb
Fix up some logging
2018-03-20 07:53:21 -04:00
6359f7f8a1
More work on loinc
2018-03-19 08:51:02 -04:00
6e2acd0689
Merge pull request #890 from jamesagnew/arglineFix
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changed in *.pom: ${argLine} -> @{argLine}
2018-03-19 05:55:54 -04:00
4578b3889f
Allow for locale differences in StopwatchTest
2018-03-19 05:54:12 -04:00
ff04ab3358
${argLine} -> [at]{argLine}
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see:
http://maven.apache.org/surefire/maven-surefire-plugin/faq.html#late-property-evaluation
2018-03-19 10:45:33 +01:00
142c4c6caa
Merge pull request #800 from InfiniteLoop90/issue-799-jaxrsrequest-fhir-version-support
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Fixes issue #799 by adding logic to handle the R4 and DSTU2_1 contexts in ca.uhn.fhir.jaxrs.server.util.JaxRsRequest.
2018-03-19 05:41:20 -04:00
60354a4cc8
Merge branch 'master' into master
2018-03-12 07:41:22 -03:00
cb2f5a0bba
Merge pull request #786 from CarthageKing/bugfix-chaining-urlvalue
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ensure to use resourceType properly when it is explicitly provided in a chained reference param
2018-03-12 07:32:27 -03:00
30cd63b929
More loinc work
2018-03-11 19:11:31 -04:00
5a653aeb20
Work on loinc mapping
2018-03-10 20:31:27 -03:00
611ee457cb
Lots of addition of loinc
2018-03-07 13:33:49 -03:00
e31aa760dd
Fix stopwatch ETA calculations
2018-03-05 19:06:05 -05:00
fee70b1a7a
Fix error in narrative for CodeableConcept
2018-03-05 16:27:07 +01:00
e201091e3a
Update licenses for changed files
2018-03-04 13:53:04 -05:00
2f7751a079
Move stopwatch into hapi-fhir-base and add timing into to client
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LoggingInterceptor
2018-03-04 12:13:18 -05:00
928cf23b4c
Logging enhancements
2018-03-04 10:21:39 -05:00
0c0b9bd74b
Fix #814 - Don't create duplicate contained resources
2018-03-02 09:46:29 -05:00
fe140a55dd
Merge pull request #868 from Tastelezz/wip-DateParam
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equals() and hashCode() for DateRangeParam and DateParam
2018-03-02 08:58:07 -05:00
3009ec7f74
- added guava-testlib as test dependency to modules hapi-fhir-structures-dstu2 and hapi-fhir-structures-dstu3
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- added DateRangeParam.equals(Object) and DateRangeParam.hashCode()
- fixed broken DateParamTest
2018-03-02 13:03:30 +01:00
66ebfa0ed3
Implement #826 - add OSGI support and Apache Karaf features with integration tests
2018-02-28 11:32:53 +01:00
1caf768fd5
- implemented DateParam.equals() and DateParam.hashCode() which comes in handy when writing tests ...
2018-02-27 10:15:19 +01:00
458401864b
Handle deletes properly in HashMapResourceProvider
2018-02-25 14:20:04 -05:00
ef6ee83744
Remove test which is no longer applicable
2018-02-24 23:09:30 -05:00
1a9522cfdd
Update license header
2018-02-24 12:05:42 -05:00
f026f8a1ac
Fix compile error
2018-02-24 12:05:05 -05:00
6e47951220
Remove unneccesary log lines and clean up some documentation
2018-02-24 10:57:32 -05:00
01ff2e7c3b
- according to the design of all other IQueryParameterXXX types changed the methods setUpperBound() and setLowerBound() to return this, supporting method chaining.
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- changed the order in which the state of a DateRangeParam instance got first modified and then verified.
- renamed the private method validateAndThrowDataFormatExceptionIfInvalid() to validateAndSet(DateParam, DateParam).
- replaced the methods haveLowerBound() and haveUpperBound() with the stateless method hasBound(DateParam).
2018-02-21 08:39:44 +01:00
2f4ac42edb
One more test fix
2018-02-18 09:17:04 -05:00
3f1a0e81c7
Avoid endless reindex loop
2018-02-17 16:10:44 -05:00
e89f8e5ba4
Fix crash with unique search parameter updates in JPA
2018-02-16 07:39:46 -05:00
e6253b7f22
Refresh search parameter cache asynchronously
2018-02-14 11:10:30 -05:00
2edc9910e5
Add a test
2018-02-09 10:29:20 -05:00
a395e48cd4
Don't crash when a multitenant server has a request for /
2018-02-04 18:44:37 -05:00
fb327c60cd
FIx spring boot issue
2018-02-04 15:04:45 -05:00
17b1ff727e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-02-03 15:48:09 -05:00
3cbf669007
Don't crash on startup if an invalid subscription is in the database
2018-02-03 15:47:48 -05:00
1d541c1588
Formatting issues
2018-02-02 14:03:53 -05:00
371be03b0f
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-02-02 13:20:09 -05:00
efc812bf56
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-02-02 12:32:13 -05:00
0e2d55081f
Fix a crash when no count parameter supplied
2018-02-02 12:31:59 -05:00
351a2fc2f1
Fix #837 - Use non-legacy content-type for plain json and xml accept
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header
2018-02-02 06:43:19 -05:00
3f1ef0e7f6
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-02-01 06:33:00 -05:00
17edf5e727
FIx some license headers
2018-02-01 06:31:21 -05:00
b61887e841
Improve performance of base64 validation
2018-01-30 17:37:12 -06:00
1c5a07b5a0
Fix #822 - Respect chained method params in a transaction search
2018-01-30 16:20:25 -06:00
e52f582769
An experimental interceptor called VersionedApiConverterInterceptor has been added, which automaticaly converts response payloads to a client-specified version according to transforms built into FHIR.
2018-01-29 12:10:05 -06:00
044b9f584a
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2018-01-28 14:02:53 -06:00
f976b7bf7e
Add new interceptor method which enabled interceptors to modify response
2018-01-28 14:01:20 -06:00
97a1ccac3d
Merge remote-tracking branch 'upstream/master'
2018-01-28 16:43:32 +01:00
2e4f80d7a3
Fix #831 - Remove useless TagListParam annotation
2018-01-26 10:03:21 -05:00
9a4933f536
Fix problem with _include=MedicationRequest:medication
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A query for MedicationRequest that should include medication
did not work, because the SearchParamDefinition defined the
path as MedicationRequest.medication.as(Reference)
2018-01-24 14:59:03 +01:00
c081f7c15d
More rule fixes
2018-01-23 11:33:31 -05:00
16038ece26
Version bump to 3.3.0-SNAPSHOT
2018-01-23 10:31:01 -05:00
4dcce4e582
Fix #832 - Correctly normalize text with Korean characters
2018-01-21 14:55:14 +08:00
3644151a69
Fix crash in JSON parser when parsing extensions on primitive elements
2018-01-18 09:07:23 +07:00
6468ca474a
Verion bump to 3.2.0
2018-01-13 02:14:33 -05:00
01186ec8cb
Squashed commit of the following:
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commit ab876ef864005b6758d3e00a1bb1ef2dad5d2161
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Jan 12 18:59:15 2018 -0500
Tests all passing
commit 4f8a5d98307da1bb5ca7602e34b1d3b791f73d25
Author: jamesagnew <jamesagnew@gmail.com>
Date: Fri Jan 12 08:21:58 2018 -0500
Almost compiling
2018-01-12 18:59:43 -05:00
f6c9e3d0fe
Add multitenancy support for server
2018-01-11 11:14:54 -05:00
0352d48720
Bump copyright message to 2018
2018-01-08 13:52:15 -05:00
7e2459fbdc
FIx up tests
2018-01-08 08:18:34 -05:00
3e8fc0c89c
Merge branch 'dstu2_custom_structs'
2017-12-12 21:47:05 -05:00
d00c7dbea8
Giant breakthrough in fixing sporadic test failures!
2017-12-05 12:08:56 -05:00
b81e89604c
Related to issue #799 , adding DSTU2_1 and R4 contexts to the FhirContext#(FhirVersionEnum, Collection<Class<? extends IBaseResource>>) method
2017-11-29 15:50:10 -06:00
8427fc4547
Merge remote-tracking branch 'upstream/master'
2017-11-26 14:23:33 +01:00
f426b0679c
Refactored the meta extensions, so it reuses the existing logic that is
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used for encoding and parsing extensions on resources.
2017-11-26 14:22:41 +01:00
James Agnew
Heinz-Dieter Conradi
anamariaradu10
Ana Maria Radu
patrick-werner
Diederik Muylwyk
Jeff Balbien
Clayton Bodendein
Łukasz Dywicki
Ruth Alkema
Gaetano Gallo
jpoth
Simon Janic