262a964a31
Add index on CONCEPT_PID on TRM_CONCEPT_PROPERTY to optimize a full-reindex of lucene index which can be needed when running in a docker container where the lucene files are discarded on redeploy. ( #1637 )
...
Co-authored-by: James Agnew <jamesagnew@gmail.com>
2020-05-23 17:11:21 -04:00
d1b963321a
MVP EMPI implementation ( #1857 )
...
EMPI Initial Implementation (still plenty of known gaps)
2020-05-22 15:03:20 -04:00
52c8e3551c
Version bump to 5.1.0-SNAPSHOT
2020-05-15 14:43:32 -04:00
b46f4a993d
One more fix for 5.0.1
2020-05-15 09:58:45 -04:00
fe0e07a313
Bump to 5.0.1
2020-05-15 05:47:01 -04:00
9fec726b0e
Add missing indexes on ResourceIndexedSearchParamDate ( #1847 )
...
* Add migration tasks for new indexes. Add new indexes to ResourceIndexedSearchParamDate
* fix dates on task, remove redundant index
* Today is not the 20th
* Fix incorrectly named migration indexes
* out of order indexes
2020-05-15 05:38:16 -04:00
1d13e29ac0
Version bump to 5.1.0-SNAPSHOT
2020-05-12 20:04:20 -04:00
d631ecff4a
Prepare for 5.0.0
2020-05-12 11:49:18 -04:00
034e878a6f
Add NOP tasks for 4.3.0 to avoid migrator issues
2020-05-10 12:09:47 -04:00
a77aa6a28e
Multitenancy Ticket 2 - #1813 ( #1821 )
...
* Work on multitenancy
* Second ticket started
* More multitenancy work
* Work on tenancy security
* Work on multitenancy
* Test fixes
* Add docs
* cs tweak
* Multitenancy fixes
* Add debug log
* Fix build
* Add headers
* Add partition selection interceptor hook
* Update hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/api/Constants.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Account for review comments
* Resolve FIXMES
* Work on tests
* Test fixes
* A bit more cleanup
* Work on multitenancy
* Update hapi-fhir-docs/src/main/java/ca/uhn/hapi/fhir/docs/ClientExamples.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/client/examples.md
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Address review comments
* Allow disabling text modifier indexing
* Add changelog
* Docs fixes
* Address review comment
* Resolve merge conflicts
* Merge master
* Compile fix
* Test fix
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-05-05 15:12:15 -04:00
8b49142b94
Clean up migrator tasks
2020-05-01 15:03:36 -04:00
3d5a8bb3f8
Add UCUM support ( #1824 )
...
* Add UCUM support
* Add changelog
* Some cleanup
* Test fix
* Add flywayDB callback
* Add hooks to schema migrator
2020-04-30 15:22:41 -04:00
a5e1b3d159
Minor changes for merge conflicts
2020-04-29 16:18:02 -07:00
8f8a8a3dc2
Merge branch 'master' into date-match-bug
2020-04-29 16:17:50 -07:00
0d8c42ee1a
Migrator tweaks
2020-04-29 10:13:55 -04:00
36a7e9c980
Test fixes
2020-04-22 14:56:13 -04:00
af43c4377a
Roll back a change that was causing test failures
2020-04-22 14:11:01 -04:00
465bce952e
A couple more migration fixes
2020-04-20 18:32:48 -04:00
9ed358f665
One more migration fix
2020-04-20 17:44:50 -04:00
e98bf2b0d3
Migration fix
2020-04-20 17:39:12 -04:00
00b1912a67
Fix typo
2020-04-20 16:59:32 -04:00
e6c806283e
Merge branch 'ja_20200206_multitenancy' of github.com:jamesagnew/hapi-fhir into ja_20200206_multitenancy
2020-04-20 16:58:59 -04:00
544d9fbc6c
Add migration tasks
2020-04-20 16:58:48 -04:00
bbab016ca6
Rename config
2020-04-20 12:38:04 -04:00
982b54df57
Work on multitenancy
2020-04-13 11:50:49 -04:00
c26a5553e9
Multitenancy work
2020-04-12 20:47:32 -04:00
e55ccf88fc
Work on multitenancy
2020-04-10 20:01:59 -04:00
e0fcbe1df2
Merge branch 'master' into ja_20200206_multitenancy
2020-04-09 11:52:27 -04:00
edc30568f2
Address review changes
2020-04-07 19:07:07 -04:00
7f2605def1
Run migrator tests against DERBY and H2
2020-03-31 15:48:11 -04:00
691f2c4e9a
Work on muiltitenancy
2020-03-29 13:35:20 -04:00
9df4c58122
Work on multitenancy
2020-03-27 09:22:00 -04:00
ec6fe70acb
Merge branch 'master' into ja_20200206_multitenancy
2020-03-27 05:50:08 -04:00
97ac551c87
Dont fail on shrink only task
2020-03-26 19:53:17 -04:00
7bdb42d70f
Restore accidentally removed method
2020-03-17 17:43:46 -04:00
22413911bf
Validation api changes ( #1719 )
...
* Validation enhancements
* Work on validation api reworking
* Keep working on validation API
* Keep working on new term API
* Work on validation api
* Ongoing work on validation
* Work on integrating validation
* Work on validation API
* Add to validation API
* Work on validation
* Work on API
* Work on validation
* Work on validation API
* Work on validation API
* Work on validation api
* Work on validation API
* Work on validation api
* Validation API changes
* Work on API
* More work on validationo API
* Work on validation API
* FIxes
* WOrk on validation api
* Work on validation API
* Tests passing!
* More cleanup
* More validation API changes
* Fix intermittent test failure
* Package reorg
* Validation API work
* Work on doocumentation
* Work on API
* More work on new validation API
* Fix errorprone-reported error
* Test fixes
* Documentation updates
* Documentation tweaks
* Work on API
* Bean name adjustments
* Build fixes
* Some test fixes
2020-03-17 13:28:59 -04:00
9305bef4ef
Remove useless migrator task generics ( #1687 )
...
* Remove useless migrator task generics
* Clean a couple of compile errors
* Try to fix intermittent
2020-03-17 13:28:43 -04:00
598bf56e87
Broken SQL Statement
2020-03-04 08:56:03 -08:00
14f671ec0b
Fix SQL Typo
2020-03-03 22:31:37 -08:00
8b223a1fd9
Rework selection generation of calculator. Add null check for empty dates
2020-03-03 16:07:25 -08:00
4a160a2df3
Merge branch 'master' into ja_20200206_multitenancy
2020-03-03 09:25:19 -05:00
df9e86ec66
Merge branch 'master' into date-match-bug
2020-02-25 17:26:53 -05:00
b2b0ff22b4
Collapse date joins ( #1726 )
...
* Collapse date joins
* Add changelog
* Address review comments
* Add whitespace
* fix test
Co-authored-by: Ken Stevens <ken.stevens@sympatico.ca>
2020-02-25 17:17:13 -05:00
f56e38148b
Add flag to DaoConfig controlling behaviour
2020-02-25 16:43:17 -05:00
97c98254d0
Extract Common functionality out of CalculateHashesTask, build CalculateOrdinalDatesTask based on it
2020-02-25 16:09:08 -05:00
3ec772b527
rework ResourceIndexedSearchParamDate constructor to support incoming string values
2020-02-25 14:06:36 -05:00
13cc8b69aa
Add schema migration
2020-02-25 11:27:08 -05:00
3b41b5b960
Type migration to boxed integer to avoid int defaulting to 0
2020-02-25 11:18:39 -05:00
38bae8866b
quiet migration tasks during tests
...
also add description to schema initialization tasks
2020-02-25 09:43:34 -05:00
8d1d3cee75
Merge remote-tracking branch 'remotes/origin/master' into ks-20200204-quiet-migrate-in-test
2020-02-25 09:20:35 -05:00
d39b54e711
Add missing migration task
2020-02-20 05:39:56 -05:00
96d00f633c
Move new migration task to version 4.3.0.
2020-02-18 14:09:17 -05:00
f7db280099
Merge remote-tracking branch 'remotes/origin/master' into im_20200131_remove_circular_dependency_forcedid
...
# Conflicts:
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
2020-02-18 12:13:00 -05:00
ddc7b601ee
Version bump to 4.3.0-SNAPSHOT
2020-02-16 19:23:22 -05:00
4fd80cfca7
Bump to 4.2.0
2020-02-16 19:00:15 -05:00
da11d3d89e
remove distinct from search ( #1712 )
...
* it works now
* oops
* add successful migration message
* add successful migration message
* Add fix for #1300
* Remove FIXME
* Test fix
* Test fix
Co-authored-by: James Agnew <jamesagnew@gmail.com>
2020-02-15 12:45:59 -05:00
5e8eec8bf6
it works now
2020-02-09 18:29:55 -05:00
b2d2346228
Work on multitenancy
2020-02-07 15:18:06 -05:00
5f30bdb27b
not sure this is going to work yet
2020-02-04 17:00:56 -05:00
318b306020
fix migration ( #1699 )
2020-02-03 17:13:35 -05:00
3c46595e81
Merge remote-tracking branch 'remotes/origin/master' into ks-20200203-remove-search-lastused
2020-02-03 11:33:15 -05:00
b4325199cf
review feedback
2020-02-03 11:20:18 -05:00
709aeb4ae8
Drop unnecessary index ( #1696 )
2020-02-03 10:29:39 -05:00
cda906d7b8
Column removed. Time to run tests.
2020-02-03 09:44:10 -05:00
5d5b3d7639
Changes to schema to loosen dependencies between Forced ID table and the Resource and Resource History tables.
2020-01-31 11:16:01 -05:00
3edeb03edc
Rework hashcode generation ( #1684 )
...
* Rework hashcode generation
* Compile fix
* Hashcoode refactoring
* FIx compile errors
2020-01-26 22:23:06 -05:00
4a4fb0fd9d
Remove transient fields from migration task
2020-01-24 08:28:01 -05:00
0718f6b52a
Allow schemalocation in XML validation ( #1677 )
...
* Allow schemaLocation declaration in XML when validating
* Add fix for #1676
2020-01-21 07:14:16 +09:00
a19d246432
License header version bump, and add the ability for "add column"
...
migration tasks to fail gracefully
2020-01-12 11:01:21 +08:00
a61527d4cb
Allow multiple PK column in addTable migrator
2019-12-21 14:05:35 -05:00
a94b684be5
Addres TODO
2019-12-18 14:43:57 -05:00
0a21ab6941
Use datasource for migrator
2019-12-18 14:23:46 -05:00
68a7613f9e
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
...
# Conflicts:
# hapi-fhir-cli/hapi-fhir-cli-api/src/main/java/ca/uhn/fhir/cli/BaseFlywayMigrateDatabaseCommand.java
2019-12-16 08:58:26 -05:00
4592decbfa
Add license headers
2019-12-15 19:51:49 -05:00
9f422efd7a
handle case where version list is quoted
2019-12-14 21:02:31 -05:00
7c3514fecc
Skip versions tested
2019-12-14 19:00:58 -05:00
4946fffac2
pass test
2019-12-14 17:27:17 -05:00
11e55cebf5
begin with failing test
2019-12-14 17:26:56 -05:00
0dde239696
migration task don't compare length if no length is specified in the task
2019-12-13 15:12:59 -05:00
931a41938b
added dry-run output to both Flyway and TaskOnly migrator
...
dry-run only calls TaskOnly migrator now
2019-12-12 14:42:43 -05:00
83106c92c1
move quartz stuff out
2019-12-11 17:00:31 -05:00
91f4e62148
Oracle works yay!
2019-12-11 15:15:47 -05:00
7cc690ffd3
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
2019-12-11 14:17:54 -05:00
7c1544d8f3
strip comments from sql before splitting ; (to avoid ; in comments)
2019-12-11 14:02:24 -05:00
da5034959b
start working on quartz fix
2019-12-11 13:41:27 -05:00
ae5f00accc
add support to stub out renameindex
2019-12-11 12:07:43 -05:00
176bf657a7
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
...
# Conflicts:
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
2019-12-10 10:10:41 -05:00
198779a25f
fix MSSQL index rename
2019-12-09 18:36:41 -05:00
3657a3ad5a
pre-review cleanup
2019-12-09 16:51:42 -05:00
bd1b41ff82
change out-of-order-permitted from environment variablet to flag to work like dont-use-flyway
2019-12-09 16:44:24 -05:00
77373605bd
add 420 migration
2019-12-09 15:58:08 -05:00
b0b410384f
add renameIndex task
2019-12-09 15:42:40 -05:00
deb5fd40a7
Added stubbed tasks for add and drop index
2019-12-09 14:42:37 -05:00
ec37138138
add environment variable to allow flyway out of order migration
2019-12-09 11:32:25 -05:00
0b30033b0a
upgrade flyway to latest version
...
automatically repair failed migrations
2019-12-09 11:19:18 -05:00
45bab9879f
migration failed when no-column-shrink was enabled.
2019-12-06 19:21:30 -05:00
bfa89483e7
Merge remote-tracking branch 'origin/master' into ks-20191119-scheduler
2019-12-06 18:13:38 -05:00
438ef70fdb
Reuse connections in brute force migrator
2019-12-06 16:52:26 -05:00
6c432733d5
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
2019-12-05 18:03:02 -05:00
d91617e923
Account for review changes ( #1623 )
2019-12-05 18:01:45 -05:00
66cc83464f
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
2019-12-05 13:06:44 -05:00
69a5266127
Allow non-flyway migration
2019-12-05 10:46:37 -05:00
e0a2b9a179
support schema initialize naming in a backwards compatible way
2019-12-02 19:02:04 -05:00
c27dfdff51
back out schema initialize naming. there may be migrated schemas in the wild this would interfere with.
2019-12-02 18:48:40 -05:00
f29118fa9c
move clustered quartz from cm db to pers db
2019-12-02 14:32:34 -05:00
63218e560d
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
2019-12-02 08:59:17 -05:00
86bd9a28fe
Fix to valueset expansion logic ( #1613 )
...
* Fox to valueset expansion logic
* Work on docs
* Docs tweaks
* Docs tweaks
* Fix test
* Remove unused class
* Add changelog
2019-12-01 21:21:19 -05:00
a58da3b535
name schema initializer to distinguish between different schemas
2019-11-28 12:10:34 -05:00
bf003f0d16
cleaned up cleanup
2019-11-27 21:54:13 -05:00
9693b1736e
fixed quartz sql with a hack. need a better fix.
2019-11-27 17:10:27 -05:00
df57d24333
Add license headers
2019-11-27 04:49:45 -05:00
7593b7f8f7
fix test
2019-11-26 16:57:59 -05:00
82990f3e97
fix test
2019-11-26 10:39:21 -05:00
ef77490c51
fix test
2019-11-26 09:50:40 -05:00
3d00634b16
make migration table name configurable
2019-11-26 09:07:53 -05:00
98d21c4ee3
review feedback
2019-11-23 07:34:49 -05:00
6543da1470
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
2019-11-15 09:28:30 -05:00
497a96ae68
Version bump for next round of development
2019-11-12 22:09:21 -05:00
f99ad981b5
Version bump to 4.1.0
2019-11-12 16:08:20 -05:00
509799095c
don't hash on init script length since it will change. Hash based on class name.
2019-11-04 10:45:02 -05:00
53cedddcab
rename BaseTask constructor parameters
2019-11-04 10:27:34 -05:00
4e2806bea5
add task descriptions
2019-11-04 10:20:54 -05:00
30865588e3
pre-review cleanup
2019-11-04 08:36:24 -05:00
947ac6f096
fix compile error from merge
2019-11-03 21:11:36 -05:00
4c732ce977
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
2019-11-03 21:07:59 -05:00
f481e11ad5
Update migration tasks
2019-11-03 18:49:47 -05:00
779366ccad
final hashcode equals fix
2019-11-03 15:52:32 -05:00
ea21b59fde
generalize initialize schema interface
2019-11-03 14:02:28 -05:00
5890059362
moar integration tests
2019-11-03 13:46:09 -05:00
de4f909eda
optimize imports
2019-11-02 21:52:35 -04:00
becd6790e8
fix test
2019-11-02 21:51:17 -04:00
8ee06855d7
FIXME cleanup
2019-11-02 21:36:03 -04:00
4cdde60917
FIXME cleanup
2019-11-02 21:32:42 -04:00
8887d41283
added proxy indicator for hash indexes migration having been run (used TRM_CONCEPT_DESIG table existence)
2019-11-02 21:30:40 -04:00
6356205768
fix final task hashcode. Multiple runs now work.
2019-11-02 17:53:21 -04:00
3bfcb42012
fix enum hashcode
2019-11-02 17:48:30 -04:00
0404454167
abort schema initialization if HFJ_RESOURCE table already exists
2019-11-02 17:03:45 -04:00
5577680a85
test hashcodes are consistent (fixed 3 that weren't)
2019-11-02 16:56:39 -04:00
f20fee297a
add hashcode to initializationProvider
2019-11-01 22:02:07 -04:00
071b14cbcc
add hashcode to initializationProvider
2019-11-01 22:00:59 -04:00
7855ce070c
typo
2019-11-01 21:46:15 -04:00
6049ee6f1c
init schema test
2019-11-01 21:40:24 -04:00
3dc2770962
consolidate providers
2019-11-01 21:35:11 -04:00
7066f35e49
persistence migrate from zero works.
2019-11-01 20:39:11 -04:00
49265dea32
added schema initialization but not used yet
2019-11-01 17:18:27 -04:00
5f294f335d
merge
2019-11-01 13:38:18 -04:00
bee993a0ec
Merge remote-tracking branch 'remotes/origin/master' into ks-flyway
...
# Conflicts:
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/taskdef/DropIndexTask.java
# hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/taskdef/DropTableTask.java
2019-11-01 13:37:00 -04:00
a5dceca075
Work on migrator task support for dropping tables in postgres
2019-11-01 11:04:20 -04:00
d1814947b3
include version number in log message
2019-10-31 17:12:02 -04:00
0cfea8a871
changed to use hibernate auto ddl flag as a check
2019-10-31 15:47:52 -04:00
Jacob Stampe Mikkelsen
Tadgh
jamesagnew
Tadgh
Gary Graham
Ken Stevens
ianmarshall
Jafer Khan