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5545 Commits

Author SHA1 Message Date
James Agnew dfe07e7a2b Avoid concurrency issue introduced by #1489 2019-09-25 13:45:02 -04:00
James Agnew 21841aedff Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-25 13:41:24 -04:00
James Agnew b027963c7a Add some test logging 2019-09-25 13:39:51 -04:00
jamesagnew b2c13f3018 Work on codecov integration 2019-09-25 13:25:59 -04:00
Diederik Muylwyk 6b22d705c7 Incremental progress fixing tests after enabling pre-expansion by default. 2019-09-25 13:24:50 -04:00
James Agnew 7700bb85ef Merge branch 'tuomoa-searchmethodbinding_test' 2019-09-25 10:55:54 -04:00
James Agnew 57377f5557 Fix #1483 - Don't let RP methods handle a request with includes if the 
method doesn't understand them
 2019-09-25 10:54:37 -04:00
James Agnew 85f039caae Remove lenient method match feature, as I am unable to find any 
documentation explaining the behaviour or any way of triggering its use.
 2019-09-25 09:19:44 -04:00
James Agnew 0b630f6851 Merge branch 'searchmethodbinding_test' of https://github.com/tuomoa/hapi-fhir into tuomoa-searchmethodbinding_test 2019-09-25 09:01:38 -04:00
jamesagnew 2efef13528 Another test fix 2019-09-25 05:43:58 -04:00
jamesagnew 4c064186a9 Try to fix intermittent testfailure 2019-09-25 05:39:00 -04:00
Ken Stevens 51b7186aa1
Merge pull request #1506 from jamesagnew/ks-modifycolumntask-npe 
fixed npe
 2019-09-24 19:34:16 -04:00
Ken Stevens 945cc6419f fixed npe 2019-09-24 18:13:53 -04:00
Diederik Muylwyk 799848291f Merging master into working branch. 2019-09-24 16:47:19 -04:00
Diederik Muylwyk 5743efa066 Minor tweak to test. 2019-09-24 16:46:05 -04:00
Ken Stevens f6fc411407
Merge pull request #1504 from jamesagnew/ks-source-request-id-append-bug 
fixed meta.source request append bug
 2019-09-24 16:32:50 -04:00
James Agnew 21b91ac0e7 Make sure we call the updateEntity method on the correct DAO type when 
processing inside a transaction
 2019-09-24 16:16:13 -04:00
Diederik Muylwyk bf5d6acef4 More troubleshooting. 2019-09-24 15:36:06 -04:00
Diederik Muylwyk 46a6b7aaef Troubleshooting lack of ValueSet pre-expansion when updating a ValueSet via transaction bundle. 2019-09-24 15:30:40 -04:00
James Agnew 7b363c2c5c Some test fixes 2019-09-24 15:28:14 -04:00
James Agnew bd763d728b Merge branch 'master' into ks-source-request-id-append-bug 2019-09-24 14:49:39 -04:00
James Agnew 264c8d9fc4 Remove redundant maven task 2019-09-24 14:40:37 -04:00
James Agnew 5f563057c0
Set up CI with Azure Pipelines (#1502) 
* Set up CI with Azure Pipelines

[skip ci]

* Update azure-pipelines.yml for Azure Pipelines

* Skip tests for a build

* Work on pipeline

* Update azure-pipelines.yml for Azure Pipelines

* Interceptors docs

* Test fix

* Disable releases from snapshot repo

* Try disabling jitpack

* Fix dependency issue

* A couple of test fixes

* Change to trigger a build

* Force a change to trigger a build

* Force a build

* FIx test
 2019-09-24 14:38:38 -04:00
Ken Stevens 0e90867a65 fixed meta.source request append bug 2019-09-24 14:35:34 -04:00
James Agnew 9b2826f3c6
Handle searches with chained slash value (#1503) 
* Work on test case for bug with searches

* Work on tests

* Fix issue with slashes in reference chain parameter for JPA server
 2019-09-24 14:31:05 -04:00
Diederik Muylwyk df4b6c798c Modified LOINC Terms to RadLex RPIDs ID and URL; pattern is mappings of main LOINC terms to say 'loinc' but parts and other codes are specified. 2019-09-24 09:21:42 -04:00
James Agnew f5788341f2
Add no-shrink-columns option to migrator (#1500) 
* Add no-shrink-columns option to migrator

* Address review comments
 2019-09-23 18:44:51 -04:00
Diederik Muylwyk 2a2e8e0ab8
Merge pull request #1501 from jamesagnew/1483-need-consistent-assignment-of-fullurl-id-and-url-for-loinc 
Fixed inconsistent IDs and URLs for LOINC.
 2019-09-23 15:59:21 -04:00
James Agnew 6f44d7c360
Fix issue deleting CodeSystem resources (#1316) 
* Fix deleting CodeSystem resources

* Test fixes

* Address review comments
 2019-09-23 15:58:57 -04:00
James Agnew 004f42cdcc Clean up docs 2019-09-23 15:56:02 -04:00
Diederik Muylwyk 25798ee3e2 Added changelog entry. 2019-09-23 15:54:42 -04:00
Diederik Muylwyk 59d7ccb99e Fixed inconsistent IDs and URLs for LOING. 2019-09-23 15:49:58 -04:00
James Agnew 7a7e876b93 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-23 09:57:17 -04:00
James Agnew 2bcb1c9c1c Work on docs 2019-09-23 09:56:29 -04:00
Diederik Muylwyk ebaa4d6920
Merge pull request #1498 from jamesagnew/1482-need-to-fix-duplication-of-codes-in-some-loinc-answer-lists 
Resolve "Need to fix duplication of codes in some LOINC Answer Lists."
 2019-09-23 09:11:21 -04:00
Diederik Muylwyk 9d4b5f3041 Merging master into working branch to resolve conflicts. 
# Conflicts:
#	src/changes/changes.xml
 2019-09-23 09:08:56 -04:00
James Agnew e05ea676e9 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-22 15:55:06 -04:00
James Agnew 520b50dfdc Ongoing work on docs migration 2019-09-22 15:54:52 -04:00
jamesagnew 936587df6e Work on migrating docs 2019-09-22 15:52:49 -04:00
James Agnew 0a5eca0821 Work on docs 2019-09-22 13:25:50 -04:00
James Agnew d43c1760ef Adjust docs 2019-09-22 08:59:54 -04:00
James Agnew 58b7e3a923 Start splitting docs into separate project 2019-09-22 08:58:17 -04:00
James Agnew f4252cdeaa Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-21 08:54:59 -04:00
James Agnew 0cbb33eded Fix up migratiom tasks for 4.1.0 2019-09-21 08:54:33 -04:00
Diederik Muylwyk 56e2904029 Removing my name. Whoops! 2019-09-20 18:48:47 -04:00
Diederik Muylwyk 0cc35699b8 Specify full path for LOINC filenames to avoid duplicates. 2019-09-20 18:43:38 -04:00
Diederik Muylwyk e09985e89b
Merge pull request #1496 from jamesagnew/dm-migration-tasks-constants-to-literals 
Replaced migration task column length constants with literals because…
 2019-09-20 12:38:43 -04:00
Diederik Muylwyk e1e8ec981b Replaced migration task column length constants with literals because they are not necessarily constant across schema versions. 2019-09-20 12:31:54 -04:00
James Agnew a989a746b0 Fix #1494 - Upgrade to new :recurse syntax for R4 include/revinclude 
statements
 2019-09-20 09:38:29 -04:00
James Agnew 92d37866de Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2019-09-20 08:57:15 -04:00