69849dd3c5
Optimize queries in JPA
2017-06-14 08:35:41 -04:00
d59b832e74
Merge branch 'master' into minute_precision_in_searchparams
2017-06-12 11:50:01 -04:00
a50a86d9af
Fix crash in JPA server if numeric search parameter has no value
2017-06-11 09:16:48 -04:00
7588a2ecff
Modify patch for #655 so that it fixes #604 without causing us to allow
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invalid values
2017-06-09 16:30:20 -04:00
c2e5fa3f18
Fix #667 - When using the AuthorizationInterceptor with the JPA server, when a client is updating a resource from A to B, the user now needs to have write permission for both A and B
2017-06-09 11:48:17 -04:00
8b5209ff67
Version bump to 2.5
2017-06-08 06:34:44 -04:00
401185baff
Fix for #660
2017-06-07 21:39:38 -04:00
72fbd045d9
Credit for #656
2017-06-07 21:34:11 -04:00
1404aa02c4
Credit for #655
2017-06-07 21:29:16 -04:00
d57a8a6c2b
Credit for #601
2017-06-07 21:22:38 -04:00
993e99770d
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-06-07 21:20:45 -04:00
e03549daae
Credit for #649
2017-06-07 21:14:53 -04:00
7c6bb01a8b
Don't allow JPA server to save duplicate or empty tags, and fix #664 by
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preventing multiple threads from loading structure definitions for
validation at the same time
2017-06-06 16:44:13 -04:00
7d659c88e5
Validator incorrectly rejected references where only an identifier was
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populated
2017-05-26 21:32:12 -04:00
ba40f44d27
Properly index decimal datatype
2017-05-26 06:39:38 -04:00
b96932a5c5
Fix dependency on new version of commons-codec
2017-05-25 15:24:47 -04:00
32de48f392
Fix broken tests
2017-05-24 15:50:53 -04:00
1ec180628f
JPA server now has configurable properties that allow referential integrity to be disabled for both writes and deletes. This is useful in some cases where data integrity is not wanted or not possible. It can also be useful if you want to delete large amounts interconnected data quickly.
2017-05-22 15:34:44 -04:00
78643981f6
Credit and test for #636
2017-05-20 18:12:34 -04:00
db1e046f91
Credit for #633
2017-05-20 17:58:34 -04:00
20c14fe8a6
Make sure we don't update unchanged resources in a transaction
2017-05-20 17:55:09 -04:00
f6ee4db598
Process :missing qualifier on date params
2017-05-19 20:36:06 -04:00
45041830bc
Server now respects the If-Modified-Since header for read operations
2017-05-17 14:57:05 -04:00
a92d80d860
Correctly encode extensions on the root of a resource with type
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reference
2017-05-17 12:40:10 -04:00
7bb9e5edd9
Custom search parameters could not chain an extension param
2017-05-17 10:46:22 -04:00
d87b4f2062
Re-enable daoconfig interceptors
2017-05-15 22:11:29 -04:00
7f2faae85e
Fix #563 : JSON Parser gave a very unhelpful error message (Unknown attribute 'value' found during parse) when a scalar value was found in a spot where an object is expected. This has been corrected to include much more information
2017-05-15 18:06:55 -04:00
48520832ef
Doc updates and allow DSTU3 resources in some annotations that
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previously didn't allow it
2017-05-14 22:03:38 -04:00
897c65e818
CLI and HttpClient cleanup
2017-05-14 06:39:23 -04:00
ef772547c3
Fix an issue in the JPA server if a resource has been previously saved containing vocabulary that is no longer valid. This only really happened if you were using a non-final version of FHIR (e.g. using DSTU3 before it was finalized) but if you were in this situation, upgrading HAPI could cause you to have old codes that no longer exist in your database. This fix prevents these from blocking you from accesing those resources.
2017-05-06 10:51:17 +02:00
15952c22dc
Fix #631 - Typo in documentation
2017-05-01 15:31:11 -04:00
403197655d
Credit for #630
2017-05-01 15:20:24 -04:00
bb9cd7c198
Add configuration property to DSTU3 FhirInstanceValidator to allow client code to change unknown extension handling behaviour.
2017-04-23 19:28:45 -04:00
9c595e18f9
Ignore updates that don't actually change anything
2017-04-23 15:04:19 -04:00
841cfb8cf3
Fix test failures from search cleanup
2017-04-22 13:08:29 -04:00
fa2950dacb
Fix tests for expiring search results
2017-04-22 08:50:51 -04:00
baef8c0021
Update changelog
2017-04-20 16:13:15 -04:00
bc545f8e3c
Issue #590 - Handle paging requests for AuthorizationInterceptor
2017-04-20 16:11:09 -04:00
b0caf0c2c5
Release notes for 2.4
2017-04-19 20:39:48 -04:00
f3b52424e3
Changelog note about r3
2017-04-18 07:51:11 -04:00
e9a1069c9d
Credit for #610
2017-04-17 18:03:55 -04:00
4023699990
Credit for #613
2017-04-17 17:59:41 -04:00
edff92f884
Credit for #617
2017-04-17 17:55:39 -04:00
c400e10fe9
Credit for #624
2017-04-17 17:52:48 -04:00
f9dbdeebdd
Credit for #623
2017-04-17 17:45:27 -04:00
54055f5bfb
Support extensions pointing to references for JPA custom search params
2017-04-14 07:26:49 -04:00
0a61096f6f
Add JPA utility method
2017-04-07 11:14:48 -04:00
75b8881813
Dependency version bumps
2017-03-31 14:32:46 -04:00
2c9a6e65e7
Fix #534 : Add setting for logical references to DAOConfig
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Merge branch 'master' into issue534
2017-03-30 03:21:50 +08:00
09ca3da59d
Credit for #453
2017-03-29 15:31:50 +08:00
14d861992c
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-03-29 15:29:10 +08:00
c6555ddd4f
DaoConfig#setAllowInlineMatchUrlReferences now defaults to true
2017-03-29 15:23:23 +08:00
4748c8ba74
New DSTU2 FhirInstanceValidator bean exposed. ( #611 )
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Merging with master, issue #609 will be closed.
2017-03-28 23:19:20 -04:00
93cfb2360c
Fix #607 - Testing UI showed an error for transactions on DSTU2 server
2017-03-27 07:50:01 +08:00
91ff109300
Fix #608 - Don't include SupportingDocumentation resource in DSTU2
2017-03-26 09:56:33 +08:00
44c0075409
AuthorizationInterceptor can now allow make read or write authorization decisions on a resource by instance ID
2017-03-24 21:10:44 +08:00
2238b119c6
Credit for #602
2017-03-20 20:34:27 +08:00
01e1566886
Fix error on site, fixes #580
2017-03-18 12:35:11 -04:00
0fc8748656
Changelog date
2017-03-18 12:15:52 -04:00
d009e836bb
Fix tests for 2.3
2017-03-18 08:06:18 -04:00
db58926ce6
Site updates for 2.3
2017-03-17 21:48:54 -04:00
8758b6f3da
Updating to 1.9.0 structures
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Squashed commit of the following:
commit 81edf46fe02a88851693f958e60855edfe69c04c
Author: James Agnew <jamesagnew@gmail.com>
Date: Fri Mar 17 21:05:22 2017 -0400
Work on converter
commit 3342d987008892dd3a75dddd251fe599c31c5a6c
Author: James <jamesagnew@gmail.com>
Date: Fri Mar 17 08:40:37 2017 -0400
Site updates
commit 7dcb63904ece1fcb59a09dc268e8382ac0b75535
Author: James <jamesagnew@gmail.com>
Date: Fri Mar 17 08:36:39 2017 -0400
STU3 structs working!
commit c5aec809e3f19f3fedf0aaaeab8cdd7924c144a2
Author: James <jamesagnew@gmail.com>
Date: Fri Mar 17 07:05:54 2017 -0400
Format test
commit 5033090010e8c93644505bccaa5e41ccbd756485
Author: James <jamesagnew@gmail.com>
Date: Fri Mar 17 07:03:39 2017 -0400
Merge tests for STU3
commit de40a516bfa4d2ab7f5e28e2d95815fde68bd10a
Merge: d5a5a60 899ed25
2017-03-17 21:06:12 -04:00
436e898819
Added a hook for post-processing request details and validation results on failure.
2017-03-17 17:02:05 -04:00
67774627d4
Credit for #575
2017-03-17 06:52:23 -04:00
3a9031bc9c
Credit for #551
2017-03-17 06:49:21 -04:00
8021e0e413
Credit for #568
2017-03-17 06:43:35 -04:00
2b43dc5e0b
Site updates per #582
2017-03-17 06:39:48 -04:00
4940457962
Credit for #543
2017-03-17 06:31:20 -04:00
fc7ac7ab00
Credit for #542
2017-03-16 21:57:55 -04:00
0be818c31c
Add validation results to oo ( #595 )
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* Add interceptor
* Add changelog entry
* Update changes.xml
Corrected reference to issue 586 (was 585). Corrected order of actions for issues 586 and 595 (was reversed).
* Update changes.xml
Should have been 585 after all. Whoops!
* Update changes.xml
Adding an item for pull request 565 that was previously approved and merged.
* Fixed test with English String in assertion.
2017-03-16 13:31:25 -04:00
a867890554
585 authorizationinterceptor wildcards ( #586 )
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* Add wildcards for authorizationinterceptor
* Add changelog
2017-03-14 22:26:45 -04:00
0c6679ac44
JPA server interceptor methods for create/update/delete provided the wrong version ID to the interceptors
2017-03-11 07:57:33 -05:00
01d102accc
Correct handling of contained resources in a response for annotation
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client
2017-03-01 17:23:31 -05:00
94bed2f59e
Site updates
2017-02-17 21:20:32 -05:00
7ee3e75665
Add JDK version notes. Fixes #560
2017-02-15 05:58:41 -05:00
0ec542b89c
Fix outdated example
2017-02-14 20:51:58 -05:00
53f6effd56
Clean up custom seach param code
2017-02-11 18:37:21 -05:00
f1828d1ca8
Fix handling of filters on valueset expansions
2017-02-10 11:05:59 -05:00
0dd6364fe5
Improve paging in JPA server for _history operation
2017-02-08 21:42:17 -05:00
d28122ff3e
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2017-02-07 12:24:35 -05:00
ad781334d8
Fix conditional creates updating resource body
2017-02-07 11:36:24 -05:00
d5fbcf8e82
Return an OperationOutcome in the response for a delete in JPA
2017-02-07 07:44:57 -05:00
b7f165019d
Tweak re-indexing
2017-02-07 07:00:51 -05:00
7149d2e053
Merge branch 'custom_jpa_search_params'
2017-02-04 16:34:05 -05:00
78fd020590
Credit for #548
2017-02-04 16:10:59 -05:00
6875da8556
Clean up changes.xml
2017-02-04 16:09:20 -05:00
54ac780cd5
Custom params works!
2017-02-04 16:02:00 -05:00
ea5a023e17
Fix typo
2017-01-31 10:42:30 -05:00
b0981a8dc5
Credit for #547
2017-01-31 07:22:38 -05:00
11f1f4f6ee
Deprecate getAllPopulatedChildElementsOfType
2017-01-31 06:53:04 -05:00
e5b9aa4536
Bump some dependency versions
2017-01-30 17:59:01 -05:00
ce80007f8d
Bump spring version and refactor examples
2017-01-29 22:55:22 -05:00
d3ef52d49d
Credit for #533
2017-01-29 18:01:18 -05:00
3960666c68
Credit for #538
2017-01-29 17:56:13 -05:00
b66aa9761e
Allow parsing of RSQuot
2017-01-29 15:49:10 -05:00
97f1e55131
Add changelog about the extensions fix
2017-01-26 11:39:42 -05:00
344e324929
Fix #544
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Squashed commit of the following:
commit 1ab9b58e9f5c752cdace127b76884a599bbe236c#544
2017-01-24 10:47:24 -05:00
dc17157db8
Credit for #539
2017-01-20 18:49:01 -05:00
d1542e98c5
JPA server was not correctly validating and expanding SCT codes
2017-01-19 17:37:43 -05:00
22f796fa7c
Allow history operation at type level with authorizationinterceptor
2017-01-16 18:41:39 -06:00
9823ac1eaf
Add sources and javadocs to the distribution JARs
2017-01-15 12:05:40 -06:00
dbc6abc658
Fix #504 - Error if custom type has illegal extensions
2017-01-13 21:46:16 -06:00
fa1ad5ba85
Fix #519 - Issues with JPA capabilitystatement related to the _id param
2017-01-13 21:19:19 -06:00
0dd1d77bec
Update credit for #503
2017-01-13 12:12:32 -06:00
37c40c4f9e
Fix #503 - Checking authorization again patient compartment fails with delete operation
2017-01-13 11:06:00 -05:00
3b41d85952
Server interceptor methods were being called twice unnecessarily by the JPA server, and the DaoConfig interceptor registration framework was not actually useful. Thanks to GitHub user @mattiuusitalo for reporting! Fixes #532
2017-01-11 20:57:39 -05:00
5b7abf15dc
Properly purge subscriptions
2017-01-11 18:19:46 -05:00
fe24841350
Work on #532
2017-01-09 19:00:56 -05:00
65f597aeb1
Migrate to new fhirtest.uhn.ca server
2016-12-28 17:02:08 -05:00
0ec61533a8
Publish 2.2
2016-12-20 19:00:37 -05:00
c1cc4802f3
Release 2.2 docs
2016-12-20 16:23:43 -05:00
2a94242f22
Fix web testing UI to handle CapabilityStatement correctly
2016-12-19 14:32:48 -05:00
964919d880
Improve parsing
2016-12-19 14:03:11 -05:00
7838d511d0
Fix typo in IHttpResponse
2016-12-19 11:29:05 -05:00
74a73e74c5
Dependency version bumps
2016-12-14 09:21:00 -05:00
4eb2e017f8
Fix #528 - Allow reads by compartment in authorizationinterceptor
2016-12-13 18:30:47 -05:00
fd14750614
Credit for #507
2016-12-12 07:41:40 -05:00
826c91087b
Credit for #510
2016-12-12 07:32:36 -05:00
43adae1d01
Credit for #523
2016-12-11 18:30:05 -05:00
9cb014724b
Add validator for DSTU2.1
2016-12-11 17:39:05 -05:00
191e3b6d4d
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-12-10 19:52:25 -05:00
c544dd4053
Merge remote-tracking branch 'upstream/master'
2016-12-10 12:46:18 -08:00
766fbfe1fb
update change log for PR526
2016-12-10 12:25:22 -08:00
b0d656e5d9
Refactor fix for #520 a bit so that version in DSTU3 is always pulled
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from the model
2016-12-10 14:40:27 -05:00
ee63bbea74
Fix #516 - Handle STU3 invalid enum values with an appropriate exception
2016-12-10 14:14:22 -05:00
2f55fdee2e
Credit for #525
2016-12-10 07:38:23 -05:00
223df60c1d
Doc updates
2016-12-08 10:50:42 -05:00
72653a9ec4
Fix #500 - Next and previous links not working in testpage UI
2016-12-08 10:45:47 -05:00
5149e581db
Fix #521 - Wrong or missing ID body in update should be an error
2016-12-08 08:31:52 -05:00
e8fad33042
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-12-05 14:53:09 -05:00
cfb2c51eab
CLI upload-examples failed to delete file under windows
2016-12-05 14:51:59 -05:00
9688caf8f2
Version bump back from bad spring version
2016-12-04 21:59:16 -05:00
bf05dd86f8
Bump spring version
2016-12-04 18:51:21 -05:00
ffefb79bf1
Fix crash in JPA when _include points to external reference
2016-12-01 12:43:31 -05:00
a9d7b8d636
Add test and credit for #518
2016-11-25 18:28:18 -05:00
81773de261
Fix #276 - Prevent contained resources being encoded as duplicates
2016-11-25 17:18:57 -05:00
888f42a032
Introduce new CORS interceptor and switch examples to use it
2016-11-21 18:30:51 +01:00
5846ce4518
Make the parser configurable so that when parsing an invalid empty value (e.g. {"status":""} parser will either throw a meaningful exception or log a warning depending on the configured error handler.
2016-11-21 14:48:44 +01:00
285b8aa1dd
Document switch in CORS filter
2016-11-21 14:12:04 +01:00
b5b57a5d63
Docs for #495
2016-11-21 14:01:52 +01:00
ba896e2553
Clean up CORS
2016-11-21 13:37:59 +01:00
4ed17457dd
Work on CORS
2016-11-17 17:10:52 +01:00
ca9223fb70
Add ability to disable stale search expiry
2016-11-17 10:01:23 +01:00
6314f5efb3
Fix structuredefinition regression
2016-11-14 12:04:56 -05:00
8676489792
Don't incorrectly block transactions
2016-11-11 23:52:16 -05:00
42295caa61
Site changes
2016-11-11 22:30:19 -05:00
5fd4ca3438
Index page for 2.1 release
2016-11-11 20:15:36 -05:00
d1d3b18729
Credit for #470
2016-11-11 10:50:04 -05:00
01afc49863
Documentation
2016-11-11 10:43:03 -05:00
ef9f0bc35b
Fix unneccesary database flush operation
2016-11-08 22:48:04 -05:00
d159e44e52
Documentation for next release
2016-11-06 18:14:21 -05:00
f551ffb6ed
Merge pull request #479 from vadi2/patch-4
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Fix marameter typo
2016-11-04 19:00:34 -04:00
68b4a0cff7
Merge pull request #475 from vadi2/patch-3
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Fix download link
2016-11-04 19:00:30 -04:00
bb05fa6512
Merge pull request #474 from vadi2/patch-2
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Fix formatting for LOINC example
2016-11-04 19:00:26 -04:00
d30140cd27
Credit for #479 , #475 , and #474
2016-11-04 18:59:42 -04:00
af8ae69ee4
AuthorizationInterceptor enhancements
2016-11-04 07:43:22 -04:00
3f6dfb6ba8
Fix marameter typo
2016-10-27 09:40:09 +10:00
a67171e231
Fix #472 - Wrong header being returned (Content-Location instead of
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Location) on STU3 server
2016-10-26 12:12:19 -04:00
a246809c92
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-10-25 11:45:42 -04:00
3de62701cd
Remove unused field in JPA server
2016-10-25 11:30:11 -04:00
ba46f9a55d
Fix download link
2016-10-24 13:00:54 +10:00
7398a7d7ba
Fix formatting for LOINC example
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At least I hope I do - don't know how to render it, so I'm just going off the SNOMED example above.
2016-10-24 11:14:56 +10:00
2a7fa4d8a5
Make authorizationinterceptor stricter
2016-10-22 18:00:55 -04:00
394bf44843
Credit for #455
2016-10-20 11:28:02 -04:00
79e14798cd
Credit for #469
2016-10-19 10:39:54 -04:00
3d686e9383
Fix #464 - Pretty print by default in ResponseHighlighterInterceptor
2016-10-18 14:58:28 -04:00
4c2841436f
Enhanced android documentation
2016-10-14 17:34:55 -04:00
f80bf98dcd
Fix #327 - Correctly serialize JSON extension with a reference to a
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contained resource
2016-10-14 16:36:29 -04:00
e56c75e80c
Switch Android library to use OkHttp by default
2016-10-14 16:15:27 -04:00
80e303b65b
Credit for #451
2016-10-12 14:39:17 -04:00
97cd78e6bf
Fix #454 - Chinese characters were not being correctly normalized
2016-10-12 12:50:56 -04:00
b1266cca71
JPA server shouldn't report a totalCount in Bundle of "-1" when
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there are no results
2016-10-07 17:52:06 -04:00
b37a1edaae
Fix offset error when returning multiple pages in JPA search
2016-10-07 17:42:02 -04:00
0093403860
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-10-07 11:31:12 -04:00
2c4139dc82
Allow fluent client to handle return types other than Parameters when
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invoking operations
2016-10-07 11:29:53 -04:00
5384af1004
Add #411 to changelog
2016-10-06 13:27:34 -04:00
f5eda76388
Use new STU3 mimetypes by default
2016-10-06 12:17:59 -04:00
a4975887b8
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2016-10-06 06:28:06 -04:00
2a5c26b08b
Dependency bump
2016-10-05 05:17:07 -04:00
1fd881d8f8
Return an error if a parameter is called with a chain even though it
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doesn't support chaining
2016-10-04 17:02:13 -04:00
80350a52ec
Changelog entry
2016-09-30 18:13:20 -04:00
26cd316343
Fix #414 : Parser should not choke with a NullPointerException if it
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encounters an extension without a URL
2016-09-30 17:35:29 -04:00
ff4755fbf3
Fix #441 : Correctly handle search with chains across a field with choice
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type
2016-09-30 14:03:20 -04:00
8b80d932da
Fix #443 - XhtmlNode.equalsDeep() did not work
2016-09-29 15:00:01 -04:00
5da1d22d02
Docs
2016-09-28 17:04:55 -04:00
8a9a031a8d
Fix uploading CLI DSTU2 examples
2016-09-28 16:25:01 -04:00
eba136d706
Correctly handle custom types in programatic access to JPA
2016-09-27 14:22:48 -04:00
3d73aad275
Fix unit tests
2016-09-21 16:58:57 -04:00
ff4e270ca4
Changes
2016-09-18 16:10:12 -04:00
ae97165a0a
Add interceptor method on server which will be called after all other
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processing
2016-09-18 16:08:16 -04:00
b20a5e6b90
Bundles for history did not validate
2016-09-18 10:28:24 -04:00
d8c99363db
Patch modifications
2016-09-18 08:35:54 -04:00
40286f49c2
Merge branch 'patch' of github.com:jamesagnew/hapi-fhir into patch
2016-09-17 23:40:54 -04:00
364c18e06e
Use more compatible Accept header in STU3 client. Also fixes missing
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Woodstox library in android builds per #450 )
2016-09-16 23:46:06 -04:00
f92c5a7232
Fix #446 - Don't give child resources the ID of the parent
2016-09-16 15:01:14 -04:00
12790d385c
Fix #445 - Server was using the wrong mimetype for conf statement
2016-09-16 13:25:03 -04:00
4de0e38e01
Add credit for #446 and #448
2016-09-16 13:16:28 -04:00
a2ffc6af05
Fix #444 - Correct handling of parsing milliseconds in dates before 1970
2016-09-09 18:18:28 -04:00
d41b412dee
Fix #440 - Don't depend on Saxon
2016-09-08 15:56:15 -04:00
6357c38180
Support _has param in conditional URLs in JPA
2016-09-08 13:14:15 -04:00
James Agnew
Diederik Muylwyk
Bill Denton
Vadim Peretokin