Commit Graph

443 Commits

Author SHA1 Message Date
Kevin Dougan SmileCDR 9036df25fa
2229 - Remove support for the upload-igpack CLI command. (#2233)
* 2229 - Remove support for the upload-igpack CLI command.

* 2229 - Revert changes made to the ValidateCommand class since it only takes an igpack as a parameter and therefore, should NOT have been removed.

* 2229 - Remove the igpack option from the Validate command.

* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_3_0/2229-remove-upload-igpack-command.yaml

Co-authored-by: James Agnew <jamesagnew@gmail.com>

Co-authored-by: Kevin Dougan <kevindougan@kevins-mbp.lan>
Co-authored-by: James Agnew <jamesagnew@gmail.com>
2020-12-14 09:50:16 -05:00
jamesagnew 0dc0e91766 Credit for #2241 2020-12-14 06:06:07 -05:00
Vladimir Nemergut 5d43f4c35e
Use system properties in ApacheRestfulClientFactory (#2241)
* Use system properties in ApacheRestfulClientFactory

#2192

* Add changelog entry for #2192
2020-12-14 06:01:17 -05:00
James Agnew 81f6fe9106
Support IBaseBundle as parameetr type for @Transaction method (#2237)
* Support IBaseBundle as parameetr type for @Transaction method

* Add changelog

* Add bundle setter
2020-12-11 18:33:00 -05:00
James Agnew e4d6c51290
Allow plus symbol in email address match url (#2224)
* Allow plus symbol in email address match url

* Add changelog
2020-12-09 21:52:03 -05:00
Tadgh 0938d72b51
Revert "Remove all references to Person from EMPI." 2020-12-09 14:57:00 -05:00
Nick aef84c9fe9 Updated docs yet again 2020-12-08 11:24:40 -05:00
Nick d3c0944388 Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-12-07 22:02:45 -05:00
Nick 61c1b6cfb2 Updated docs 2020-12-07 19:30:18 -05:00
Nick fd90eb699f Review updates 2020-12-07 18:03:56 -05:00
James Agnew fd528a0f7d
Improve error message on unsupported resource type (#2221)
* Improve error message on unsupported resource type

* Add changelog
2020-12-07 17:35:51 -05:00
Nick Goupinets af461cd343
Apply doc update suggestions from code review
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-12-07 14:04:04 -05:00
Nick f5f7f2df14 Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-12-07 11:55:51 -05:00
James Agnew d958764d49
Partition data leaks across searches (#2220)
* Partition data leaks across searches

* Add changelog

* Resolve FIXME

* Add test logging

* Test fix

* Test fix
2020-12-06 16:32:07 -05:00
Tadgh 6799973016
Add attribution for split package fix (#2216) 2020-12-03 16:40:23 -05:00
Nick 5c40afb0c9 Updated doc headers 2020-12-03 16:11:10 -05:00
Nick 499a68a093 Reviewed docs and added change entry 2020-12-03 15:53:06 -05:00
Nick 4352e0a61f Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-12-03 11:28:21 -05:00
James Agnew 1eae5db374
autoCreatePlaceholderReferenceTargets true breaks multitenancy (#2215)
* Fix #2209 - autoCreatePlaceholderReferenceTargets true breaks multi-tenancy

* Add changelog

* Address fixme
2020-12-03 08:53:37 -05:00
James Agnew 35f4d48eee
Fix validating capabilitystatements (#2214)
* Fix validating capabilitystatements

* Add changelog
2020-12-03 05:31:04 -05:00
James Agnew 7627a86176
Improve version logging (#2213)
* Improve version logging

* Add changelog

* Test fixes
2020-12-02 21:19:04 -05:00
Tadgh b11f97d9ef
HOTFIX for invalid changelog type (#2212) 2020-12-02 16:41:37 -05:00
jamesagnew 0f80c2adf9 Update changelog 2020-12-02 14:48:14 -05:00
James Agnew a3ae6c3813
Add partition selector to id parameter (#2208)
* Add partition selector to id parameter

* Add changelog
2020-12-02 14:10:37 -05:00
Nick Goupinets 417ae55cb4 Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-12-02 09:29:47 -05:00
James Agnew 6e72ee8f6b
Fix new searchbuilder on oracle (#2205)
* Fix new searchbuilder on oracle

* Add changelog
2020-12-02 06:22:41 -05:00
Nick Goupinets d63c580e82 Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-12-01 13:18:42 -05:00
jamesagnew 015502e98e Docs tweak 2020-11-30 18:59:53 -05:00
James Agnew c309737166
Allow reading from multiple partitions (#2198)
* Partitioning rework

* Work on partition improvements

* Partition updates

* Work on partitiong

* Test fixes

* Add docs

* Add changelog

* Resolve FIXME

* Test fixes

* Test fixes

* Test fixes

* Compile fix

* Fix compile error

* Test fix

* Test fixes
2020-11-30 17:59:52 -05:00
jamesagnew 283834ed1d Docs tweak 2020-11-30 16:25:15 -05:00
Ken Stevens 3d3242cf9a
Resource change listener (#2191)
* init rev

* fix build

* Tweaked the POM config settings and also added some dependency exclusions (commented out for now).

* More re-factoring of the CQL Unit Tests.

* Removed a LogMessages.html file and a minor Unit Test change.

* Unit Tests.

* added debug logging to troubleshoot the dao that has no name

* added debug logging to troubleshoot the dao that has no name

* workaround to get past null dao resourceName issue

* fix jsons to get test to pass.  Test still fails with library id problem

* gitignore

* gitignore

* test passes!  Woohoo!

* undo troubleshooting logging

* added timer and logging.

* added asserts and time multiple evaluations and measure the average

* readme

* adding explanations

* added more explanatory notes

* measure 2 patients

* move pom to use cqf snapshot

* roughed out cache

* roughed out cache

* Added code to VersionChangeCache class.

* added tests

* added polling test

* wrote init version

* wrote init version

* optimized versioncache

* worked on getting tests to pass

* redesigned interfaces

* all tests pass

* fixmes

* fixmes

* rename param

* Added Unit Tests.

* javadoc

* Fixed the 2-Patient Unit Test.

* More Unit Test work.

* make ResourceVersionMap immutable

* Fixed a Unit Test that was failing intermittently by adding a new way to refresh the cache.

* Use a new method called doRefreshAllCaches(0) to force a refresh and have all Listeners called immediately.

* Cleaned up IVersionChangeListenerRegistry interface to make methods more clear and resolved all Unit Tests.

* disabled tests

* disabled tests

* removed unused test method

* fixed refresh logic and added asserts

* moved cache so it can be used by searchparamregistry

* Updated the Cql Unit Tests to be properly configured for Dstu3 or R4.

* started rewriting SearchParamRegistryImpl to use new cache
added init method to listener interface

* added fixmes

* adding tests

* tests pass

* added tests

* Fixed the way CqlProviderFactory Autowires Beans so it can work with both Dstu3 and R4 contexts.

* moar tests

* fix test

* work tests

* reverting unneccessary refactors

* undo unneccessary import changes to reduce MR size

* undo unneccessary import changes to reduce MR size

* Unit Test fixes...more to come...

* add unregister

* fix tests

* Changed ResourceVersionCache to use a Map of Maps.

* searchparam test

* test passes

* resolved fixme

* fixmies

* strengthen test asserts

* More Unit Test changes and added some FIMXME items.

* changed from long to changeresult

* renamed VersionChange -> ResourceChange

* fixed delete bug

* organize imports

* fix test

* add update test

* add test reset function

* fix stack overflow

* fix startup race condition (might still be intermittent)

* found the problem.  delete doesn't work because we can't look up the deleted resource to find out what its name is

* fixed regression

* abandoned idea of incrementally updating searchparam registry.  Rebuilding every time--it doesn't change that often.

* fix test

* begin with failing test

* test passes

* fixmes and javadoc

* fix test

* fixme

* fix test

* whack-a-mole.  Either subs pass or cql passes.  Something's fishy with the FhirContext

* fix subscription test initialization

* fix method name

* Re-factored the CqlProvider Unit Tests.

* changed ResourceChange API

* add interface

* add interface

* fix test

* add schedule test

* add doc

* init rev

* FIXME

* modify FhirContext change

* change fhirContext.getResourceTypes to lazy load

* converted subscriptions

* converted subscriptions

* begin with failing test

* test passes

* fix test

* test coverage

* test coverage

* test coverage

* test coverage

* good coverage now

* pre-review cleanup.  I think I found a bug.

* moved cache into listener entry
tests pass with fixmes

* fix test

* fix test

* fix test

* fixme

* FIXMEs

* merge cache and registry

* method reorg

* javadoc

* javadoc done.  all FIXMEs resolved.

* change log

* changes needed by cdr

* spring config cleanup

* james feedback

* james feedback

* might not work. Try moving resourcechangeconfig into searchparam config

* merge ResourceChangeListenerRegistryConfig.java into SearchParamConfig

* fix test

* fix SubscriptionLoader

* fix SubscriptionLoader

* create ResourceVersionMap from resources

* added cache handle interface

* fix test

* javadoc

* fix test

* fix test

* James feedback: clone searchparametermap

* fix startup

* fix test

* fix test

* fix intermittent

* pre-review cleanup

* FIXME

* final FIXME yay!

* Address a couple of my own reviw comments

Co-authored-by: Kevin Dougan <kevin.dougan@smilecdr.com>
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2020-11-29 19:42:40 -05:00
James Agnew 1e5def260c
Bump woodstox version (#2199) 2020-11-27 19:49:06 -05:00
Nick Goupinets 2a3b72db17 Merge remote-tracking branch 'origin/master' into gg_20201105-remove-person-references 2020-11-27 16:54:04 -05:00
jamesagnew b85fd42ead Add changelog validator 2020-11-27 16:40:31 -05:00
jamesagnew 835c450b63 Fix changelog file 2020-11-27 16:23:57 -05:00
Nick Goupinets 8a7dc4e80b EMPI to MDM 2020-11-27 15:12:21 -05:00
IanMMarshall 722e24d80c
Merge pull request #2175 from jamesagnew/ft-fix-expend-filter-contains-issue
Fixed expand filter issue
2020-11-27 14:47:05 -05:00
Frank Tao a511543e77 Merge branch 'master' into ft-fix-expend-filter-contains-issue
# Conflicts:
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoValueSetDstu3.java
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoValueSetR4.java
#	hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/r5/FhirResourceDaoValueSetR5.java
#	hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/dstu3/ResourceProviderDstu3ValueSetTest.java
2020-11-26 18:47:10 -05:00
jamesagnew da75ff8da2 Credit for #2197 2020-11-26 10:08:56 -05:00
James Agnew fb8658da70
Always apply vs filters correctly (#2195)
* Always apply valueset filters correctly

* Test fix

* Testfix

* Test fix

* Add changelog

* Test fix
2020-11-24 18:12:02 -05:00
Nick Goupinets 5f97428d38 Added schema migration steps for MDM 2020-11-24 15:50:56 -05:00
Tadgh 702cc7762d
2185 doc updates for multitenancy (#2187)
* update to docs to indicate requests to default partition

* update operation docs
2020-11-20 11:08:19 -05:00
Tadgh 99d2bf1f0e
Merge pull request #2170 from jamesagnew/2169-docs-hapi-fhir-cli
2169 - Fixed hapi-fhir-cli doc issues.
2020-11-20 10:43:46 -05:00
Tadgh 8647502da1
update to docs to indicate requests to default partition (#2186) 2020-11-20 10:32:59 -05:00
Frank Tao 5b471602c6 Merge branch 'master' into ft-fix-expend-filter-contains-issue 2020-11-20 10:29:58 -05:00
Frank Tao 2d2add60ec Updated the changelog 2020-11-20 09:02:40 -05:00
James Agnew a01f5ae906
Fix subsumption test direction (#2183)
* Fix subsumption test direction

* Add changelog

* Test fixes
2020-11-19 21:48:54 -05:00
James Agnew 8b65db0c98
Improve error message on unique constraint violation (#2182)
* Improve error message on unique constraint violation

* Add changelog

* Test fixes

* Test fix
2020-11-19 21:20:59 -05:00
Frank Tao e551f1837e Updated based on review 2020-11-19 20:22:13 -05:00
NG 4bbe4a3ef7 Merge branch 'gg_20201105-remove-person-references' of https://github.com/jamesagnew/hapi-fhir into gg_20201105-remove-person-references 2020-11-19 14:56:31 -05:00