Ken Stevens
d71121e268
oops
2020-09-29 17:37:09 -04:00
Ken Stevens
09d09233ff
empi bugfixes and enhancements ( #2104 )
2020-09-29 17:27:43 -04:00
ianmarshall
42b4e9ae02
Add change log.
2020-09-28 08:45:59 -04:00
James Agnew
ecc09889cb
Avoid duplicate search param defs in generated CapabilityStatement ( #2101 )
...
* Avoid duplicate search param defs in generated CapabilityStatement
* Add changelog
2020-09-22 19:21:34 -04:00
jamesagnew
8d9aa417e2
One more file rename
2020-09-22 17:13:06 -04:00
jamesagnew
3debef6cd4
Rename changelog
2020-09-22 12:39:05 -04:00
James Agnew
ef4f3df945
Don't install draft package contents ( #2099 )
...
* Don't install draft package contents
* Add changelog
* Add changelog
2020-09-22 09:44:36 -04:00
James Agnew
072e63be5a
Avoid a crash on double date chains ( #2097 )
...
* Avoid a crash on double date chains
* Add changelog
* Address coverage warning
2020-09-21 15:43:07 -04:00
Ken Stevens
3189819dd5
limit transaction size config ( #2087 )
2020-09-16 14:13:03 -04:00
jamesagnew
b64e982ec3
Credit for #2083
2020-09-16 09:07:33 -04:00
James Agnew
9711b5ed18
Update resources on package reinstall ( #2078 )
...
* Start testing
* Update resources on package install
* Add changelog
2020-09-15 08:46:43 -04:00
James Agnew
5b6ee4e475
Dependency version bump ( #2074 )
...
* Dependency version bump
* More dependency work
* One more fix
2020-09-14 08:42:28 -04:00
Alan Lescano
800283ae97
Update points.json ( #2073 )
...
Update of my contact e-mail and lat./long. points
2020-09-13 16:06:33 -04:00
jamesagnew
c73da4d989
Fix SIL-A's name
2020-09-03 14:17:37 -04:00
James Agnew
c6777578a8
Avoid DB binary storage deadlock ( #2062 )
...
* Avoid DB binary storage deadlock
* Add changelog
* Rework
2020-09-01 09:52:38 -04:00
James Agnew
437e81fc65
Support multiple updates of one resource in a transaction ( #2050 )
...
* Support multiple updates of one resource in a transaction
* Test update
* Add changelog
* Test fix
2020-08-25 05:55:54 -04:00
jamesagnew
969a20d9e8
Credit for #2049
2020-08-22 17:01:37 -04:00
James Agnew
dbbff1fd16
Allow HTTP 204 response to transaction ( #2051 )
...
* Allow HTTP 204 response to transaction
* Add changelog
* Test fix
2020-08-21 21:00:55 -04:00
James Agnew
03cde8c53f
Don't use remote termsvc on implied system validation ( #2045 )
...
* Don't use remote termsvc on implied system validation
* Add changelog
2020-08-18 13:56:37 -04:00
James Agnew
1fadaeeff5
Reject nvalid SearchParameter wiith no path expression ( #2043 )
...
* Fix some changelog typos
* Reject SearchParameter with invalid path
* Add changelog
* Test fix
* Test fixes
* Test fixes
* Test fix
* One more test fix
2020-08-17 11:21:55 -04:00
James Agnew
eab828f47a
Add transactionbuilder ( #2041 )
...
* Add transactionbuilder
* Add changelog
* Add creates
2020-08-17 07:47:40 -04:00
jamesagnew
3a5e0ed872
Fix #2042 - Outdated CI link on website
2020-08-16 21:03:27 -04:00
jamesagnew
ad12ee4a5c
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2020-08-16 21:03:13 -04:00
jamesagnew
cd65c298fe
Fix some changelog typos
2020-08-16 09:01:42 -04:00
jamesagnew
a3951b551f
Add release details for 5.1.0
2020-08-13 17:36:04 -04:00
jamesagnew
89f68353ee
Add changelog
2020-08-13 05:47:56 -04:00
jamesagnew
92718c7ef2
Version bump to 5.2.0-SNAPSHOT
2020-08-12 10:23:46 -04:00
jamesagnew
5fb7bd5156
Version bump to 5.1.0
2020-08-11 17:43:24 -04:00
Ken Stevens
aed97ad1cb
added EMPI change log ( #2036 )
2020-08-11 15:33:33 -04:00
Jens Kristian Villadsen
39eea88b47
Update interceptors.md ( #2033 )
...
Added the mention of public requirement!
2020-08-11 05:25:36 -04:00
James Agnew
e61b39fc30
Force a flush of the SearchParameter cache sooner when SPs change ( #2030 )
...
* Force a flush of the SearchParameter cache sooner when SPs change
* Add changelog
* Test fixes
2020-08-09 19:30:59 -04:00
James Agnew
8f6d08dd58
Fix #2022 - Invalidate caches on expunge ( #2029 )
...
* Fix #2022 - Invalidate caches on expunge
* Rename changelog file
2020-08-09 14:14:28 -04:00
James Agnew
8e0023c385
Disable referential integrity for some paths ( #2025 )
...
* Disable referential integrity for some paths
* Add changelog
* Remove unneeded file
2020-08-09 07:09:37 -04:00
James Agnew
0de0b88aa0
Fix TestpageOverlay XSS Vulnerability ( #2027 )
...
* Resolve XSS vulnerability
* Add changelog
2020-08-09 07:06:11 -04:00
James Agnew
63ef2ce006
Fix #2012 - Always filter total from search results when consent interceptor in use ( #2020 )
...
* consent bug test
* Fix #2012 - Always filter total from search results when consent
interceptor in use
* Add changelog
* Address coverage issues
Co-authored-by: Jens Kristian Villadsen <46567685+jvitrifork@users.noreply.github.com>
Co-authored-by: jvi <jvi@trifork.com>
2020-08-07 09:16:02 -04:00
Tadgh
6cb39a14ea
Empi doc updates ( #2021 )
...
* Update documentation about EMPI automatic linking
* Further documentation updates
2020-08-06 16:45:04 -04:00
Tadgh
3b9f9e6cc3
Rename operation
2020-08-03 21:35:12 -07:00
Tadgh
0ef1665061
Merge branch 'batch-empi-job' of github.com:jamesagnew/hapi-fhir into batch-empi-job
2020-08-01 11:48:27 -07:00
Tadgh
8b378995b2
Doc updates
2020-08-01 11:45:47 -07:00
Tadgh
4c64cec8fa
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_operations.md
...
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-08-01 11:40:24 -07:00
Tadgh
9c5b69bb6e
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_operations.md
...
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-08-01 11:37:11 -07:00
Tadgh
dfecca33bc
Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_operations.md
...
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-08-01 11:32:30 -07:00
Tadgh
7299162f10
Update doc phrasing
2020-08-01 11:31:28 -07:00
Tadgh
bd22b0239f
Add caveat
2020-07-31 09:13:38 -07:00
Gary Graham
9f0af3c21c
docs for batch run
2020-07-30 19:25:30 -07:00
Tadgh
f731e44303
Partial addition of docs for batch run
2020-07-30 18:21:35 -07:00
Tadgh
07f9e8466b
Add documentation for -clear
2020-07-30 15:23:43 -07:00
Tadgh
8b4fa8048f
Add changelog
2020-07-30 14:42:25 -07:00
Tadgh
0e88f359f5
Merge remote-tracking branch 'remotes/origin/master' into batch-empi-job
2020-07-29 09:42:12 -07:00
James Agnew
3098affccb
Update path when updating resource links ( #2007 )
...
* fix resource link index reuse bug
* Resolve merge conflicts
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-07-28 21:40:56 -04:00
James Agnew
6a8e09addf
Ensure that parent structuredefinitions are snapshotted before ( #2005 )
...
* Ensure that parent structuredefinitions are snapshotted before
snapshotting child
* Add changelog
2020-07-28 11:46:58 -04:00
Tadgh
82dcc395ec
Merge branch 'master' into batch-empi-job
2020-07-27 14:59:27 -07:00
James Agnew
3a7ac0debc
Correct invalid decimal numbers stored in DB ( #2003 )
...
* Correct invalid decimal numbers stored in DB
* Add changelog
2020-07-27 13:33:27 -04:00
michelgleeson
4e66cb6752
Merge pull request #1994 from jamesagnew/fix_mssql_errors
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Fix mssql errors
2020-07-24 11:26:23 -04:00
jamesagnew
296ed963cc
Fix sentence fragment
2020-07-23 12:57:46 -04:00
Mike G
7b435d6052
changelog for mssql changers
2020-07-23 12:16:11 -04:00
Tadgh
bbe6d5600e
Address review comments
2020-07-22 11:58:08 -07:00
Ken Stevens
160778d3fd
Empi docs ( #1989 )
...
* Remove lines from image edges. Thanks Max!
* fix case 4 docs
only mark possible match as eid if it was via an eid match
2020-07-21 13:07:49 -04:00
jamesagnew
4c4d46008b
Credit for #1848
2020-07-21 05:40:41 -04:00
jamesagnew
c13e17b4e6
Add changelog and bump Jetty
2020-07-17 11:50:45 -04:00
Ken Stevens
ebd6ca4b64
Empi 3 ruleset version ( #1978 )
...
* add rule version
* add rule version
* Rough in model for Golden Record.
* Test Link Rule Version
* add eid match boolean
* added new fields to EmpiLink to provide more information about how the link was created
* add logging to check an edge case
* all tests pass
* wip with failing tests
* tests pass
* FIXME
* optimize imports
* test score in provider output
* FIXME
* FIXME
* Fix jpa test app context
* fix migration string length
* review feedback param name
* review feedback javadoc
* review feedback javadoc
* bean config reorganization for cdr
* add more tests
2020-07-17 08:31:15 -04:00
jamesagnew
49c08f31d8
Credit for #1896
2020-07-16 09:26:41 -04:00
James Agnew
077ee02771
Fix validation for enumerated ValueSets ( #1982 )
...
* Allow code validation against enumerated VS
* Work on validation
* Work on this
* Work on tests
* Work on validation
* Work on tests
* Work on validation
* Test fixes
* Add changelog
* For a change
* Test fixes
2020-07-15 13:38:14 -04:00
James Agnew
063bf4237c
Allow ConceptMap with no explicit group source/target ( #1983 )
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* Allow ConceptMap with no explicit group source/target
* Add changelog
2020-07-15 12:57:10 -04:00
James Agnew
baba4cc240
Avoid version conflicts on current writes ( #1971 )
...
* Add auto retry of transactions
* Experiment in Maven build
* Transaction autoretry
* Work on transaction retries
* Work on transaction retry
* Work on transaction retry
* Fix tests
* Avoid version conflicts
* Add changelog
* Resolve LGTM issue
* FIx transaction scope error
* Test fixes
* Test fix
* Test fixes
* Test fix
* Test fixes
2020-07-13 08:51:13 -04:00
jamesagnew
c40d15294d
Credit for #1966
2020-07-08 10:44:52 -04:00
jamesagnew
b786006183
Credit for #1878
2020-07-06 13:46:30 -04:00
jamesagnew
11ad41d472
Credit for #1893
2020-07-06 05:52:40 -04:00
jamesagnew
2b5c834d96
Merge branch 'atlas-grand-rounds' of https://github.com/ConsultingMD/hapi-fhir into ConsultingMD-atlas-grand-rounds
2020-07-06 05:45:19 -04:00
Sumeet Chhetri
4c883cf741
Added an entry for Ohum/FHIR ( #1930 )
2020-07-06 05:43:20 -04:00
James Agnew
4b1546f002
Add support for ISO 3166 to validator ( #1967 )
...
* Add ISO 3166 support
* Add support for ISO-3166
* Add changelog
* Test fixes
2020-07-06 05:29:48 -04:00
James Agnew
6fb6675b1e
Resolve validation errors to ValueSet with UCUM ( #1948 )
...
* Add tests for validation errors
* Work on validation errors
* Bump core version
* Fix validation errors
* Test fixes
* Add changelog
* Test fix
* Test fix
* Test fix
2020-07-05 19:59:21 -04:00
James Agnew
f356c7c385
Migrate to JUnit5 ( #1952 )
...
* Work on junit
* Work on junit 5
* Work on junit 5
* Bump errorprone vcersion
* Work on tests
* Junit 5 tweaks
* Fixes
* Work on tests
* Work on junit5
* Work on tests
* Test fixes
* Work on junit5
* Test work
* Get junit5 working
* Test fix
* Work on tests
* WOrk on tests
* Work on tests
* fixes
* Compile fix
* One more tweak
* Compile fix
* Add changelog
* Fix compile error
* Compile fix
2020-07-04 18:28:16 -04:00
James Agnew
290577ff3e
Remove unnecessary type predicate ( #1963 )
...
* Remove unnecessary type predicate
* Add changelog
2020-07-03 17:54:25 -04:00
Ken Stevens
714bd6216e
Empi 70 phonetic indexing ( #1941 )
...
* start with failing test
* test passes with fixmes
* javadoc and config
* pre-review cleanup
* generalize encoding
* test passes, but indexing needs to be optimized
* test passes, but indexing needs to be optimized
* step 1 of optimization. big refactor of all predicates
* step 2 of optimization: determine phonetic encoder at time of RuntimeSearchParam creation
* integrated new phonetic encoders into empi
* phonetic search implemented
* IT passes
* pre-review cleanup
* final pre-review cleanup
* final pre-review cleanup
* Fix compile error
Co-authored-by: James Agnew <jamesagnew@gmail.com>
2020-06-30 17:36:54 -04:00
James Agnew
fa4bbe3685
Allow search criteria as subscription delivery mechanism ( #1951 )
...
* Terser should create correct Enumeration on create
* Start work
* Work on subscriptions
* Work on seed bundles
* Bundle transmission
* Add changelog
* Test fix
* Fix LGTM warning
2020-06-30 14:29:09 -04:00
James Agnew
072f3a422a
Use read partition for finding update candidate on upsert ( #1945 )
...
* Use read partition for finding update candidate on upsert
* Add changelog
2020-06-29 18:22:27 -04:00
Tadgh
571589d00d
Merge branch 'master' into spring-batch-integration
2020-06-24 13:46:13 -07:00
Tadgh
2bd17806c4
Update changelog
2020-06-24 09:46:56 -07:00
Ken Stevens
38a2b00663
Empi 69 and candidates ( #1936 )
...
broaden empi blocking searches to support and searchparams as well as ors
2020-06-24 09:12:56 -04:00
Tadgh
bb7a773f41
Merge branch 'master' into spring-batch-integration
2020-06-23 16:02:41 -07:00
James Agnew
e65c264927
Support double _has expressions ( #1939 )
...
* Support nested _has queries
* Add changelog
2020-06-23 17:58:47 -04:00
James Agnew
6825d2fcf0
Reduce DB roundtrips for revincludes ( #1937 )
...
* Reduce DB roundtrips for revincludes
* Add changelog
2020-06-23 16:26:04 -04:00
James Agnew
f88298a1fb
Remote terminology service enhancements ( #1934 )
...
* Remote terminology service enhancements
* Add changelog
2020-06-23 11:35:26 -04:00
James Agnew
67d363f9e1
Add setting to allow validation of reference targets ( #1932 )
...
* Add setting to allow validation of reference targets
* Add changelog
* Add changelog
* License headers
* Plugin version bump
* Experiment with Maven build
2020-06-23 11:35:10 -04:00
Diederik Muylwyk
ced376f7ba
Add changelog entry; fix typo.
2020-06-22 17:02:08 -04:00
Tadgh
0e86732599
Add changelog
2020-06-19 14:03:22 -07:00
James Agnew
46c00f4efb
Update for Loinc 2.68 ( #1917 )
...
* Work on loinc updates
* Work on loinc upload
* Clean up CLI config
* Add changelog
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/TermLoaderSvcImpl.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/TermLoaderSvcImpl.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/TerminologyUploaderProviderR4Test.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/loinc/LoincUploadPropertiesEnum.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/term/TerminologyLoaderSvcLoincTest.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Clean up imports
* LOINC fixes
* Loinc loader fixes
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
2020-06-18 16:55:11 -04:00
Ken Stevens
d164e2d450
Empi 28 matchers ( #1918 )
...
* adding matchers
* reorganize resource matching api
* added precision sensitive date matcher
* stricter rules validation
* validate thresholds
* validate paths. with FIXMES
* validate searchparams
* fix merge compile error
* add soundex, validate no duplicate names
* add normalize substring
* add exact field to matcher
* EXACT -> STRING, exact=true
* cleanup test method
* match test passes with fixmes
* fixed vector matching
* fixed vector matching
* updating documentation and fixing tests
* updated rules documentation with latest matchers
* updated rules documentation with latest matchers
* created eid page
* eid documentation
* pre-review cleanup
* clean up beans
* disentangling beans
* checkstyle
* noop to trigger CI
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_details.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_details.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_details.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_details.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/server_jpa_empi/empi_rules.md
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
* review feedback
* review feedback
* review feedback
* review feedback
* review feedback
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
2020-06-14 17:15:56 -04:00
James Agnew
622659cbb3
Add type parameter to resource reindexing operation ( #1921 )
...
* Add type parameter to resource reindexing operation
* Add changelog
* CLean up reindexing
2020-06-12 16:51:18 -04:00
jamesagnew
756602183b
Add changelog for https://github.com/hapifhir/org.hl7.fhir.core/pull/237
2020-06-11 14:03:20 -04:00
James Agnew
b8da4f0140
Add package support ( #1911 )
...
* Begin rework of package management
* Work on NPM
* Work on package management
* Work on NPM
* NPM rework
* Work on NPM
* NPM package rework
* Updates
* Updates
* Add license
* Work on package server
* Work on package importing
* Work on package management
* Package rework
* Work on packages
* Work on package manager
* Work on pkgs
* NPM work
* NPM rework
* Work on package cache
* Work on NPM
* Work on NPM
* Package fixes
* Add tests
* Tweaks
* Test fixes
* Add changelog
* Avoid snapshot dep
2020-06-10 05:30:20 -04:00
James Agnew
0d3ad622b5
Correct Validation Performance Regression ( #1895 )
...
* Validation performance regression
* Optimize validation
* More cleanup
* Add changelog
* Test fixes
* Build fixes
2020-06-10 05:26:21 -04:00
ianmarshall
122bd97344
Changes recommended during code review.
2020-06-09 09:59:03 -04:00
ianmarshall
c86e46b196
Add documentation and remove requirement for max parameter (defaulted to 1 now).
2020-06-08 18:08:02 -04:00
Ken Stevens
dd84846b94
Empi 56 link merged person ( #1902 )
2020-06-05 15:50:50 -04:00
Ken Stevens
558f419955
Empi 54 not duplicate ( #1900 )
...
add operation to unduplicate persons
2020-06-05 12:21:09 -04:00
James Agnew
21330a0a22
Transaction create performance improvement ( #1899 )
...
* Work on perf issue
* Improve write performance for large bundles with tags
* Add changelog
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_1_0/1899-improve-write-xact-perf-with-tags.yaml
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/MemoryCacheService.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/util/MemoryCacheService.java
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
* Test fix
* Test fixes
* Test fixes
Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com>
2020-06-05 05:26:06 -04:00
Ken Stevens
60e420aaa3
resolves #1838 ( #1839 )
...
* Added %today that works like %now but with date precision instead of dateTime precision.
2020-06-04 09:52:41 -04:00
Ken Stevens
33753881e2
Empi 55 deactivate merged ( #1883 )
2020-06-03 13:12:01 -04:00
jamesagnew
201c3a6187
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2020-06-02 07:47:06 -04:00
jamesagnew
760d19cf89
Prep for 5.0.2
2020-06-02 07:46:57 -04:00
ianmarshall
f48214deda
Merge remote-tracking branch 'remotes/origin/master' into im_20200316_lastn_operation_elasticsearch
...
# Conflicts:
# hapi-fhir-jpaserver-searchparam/src/main/java/ca/uhn/fhir/jpa/searchparam/extractor/BaseSearchParamExtractor.java
2020-05-29 23:54:11 -04:00
James Agnew
7f72305f57
Improve Period range indexing ( #1873 )
...
* Fix #1871 - Handle period range searches better
* Add changelog
* FIx tests
* Add test logging
* Address review comments
2020-05-28 08:56:43 -04:00
Ken Stevens
97a1bd40a1
Added TLS parameters to Java Mail Sender ( #1666 )
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* Added TLS parameters to Java Mail Sender
* changelog
2020-05-27 19:17:01 -04:00
James Agnew
6899604ae4
Correct validation of fragment codesystems ( #1865 )
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* Update validation for fragment codesystem
* Test fixes
* Add changelog
* Test fix
2020-05-25 20:44:09 -04:00
jamesagnew
0175396ee0
Docs fix
2020-05-25 20:28:57 -04:00
ianmarshall
b250ac4f3d
Add a change log.
2020-05-25 18:42:17 -04:00
jamesagnew
6a4f5b9b3a
Credit for #1826
2020-05-24 09:32:44 -04:00
Craig Appl
098c3ad737
Fixing a typo in the performance.md server_jpa doc ( #1849 )
2020-05-23 17:17:51 -04:00
jamesagnew
9192d41448
Credit for #1637
2020-05-23 17:16:19 -04:00
James Agnew
e780a8402e
Use R5 snapshot generator ( #1862 )
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* Use R5 snapshot generator
* Snapshot generator reworking
2020-05-23 12:54:19 -04:00
James Agnew
c374383b37
Allow AuthorizationInterceptor to properly authorize GraphQL statements ( #1864 )
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* Allow AuthorizationInterceptor to properly authorize GraphQL statements
* Add changelog
2020-05-22 20:40:37 -04:00
IanMMarshall
a1a3d9de38
Merge branch 'master' into im_20200520_cascade_delete
2020-05-22 16:11:38 -04:00
Tadgh
d1b963321a
MVP EMPI implementation ( #1857 )
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EMPI Initial Implementation (still plenty of known gaps)
2020-05-22 15:03:20 -04:00
ianmarshall
6a5c23c36b
Adding a proposed change log.
2020-05-22 13:45:17 -04:00
Ken Stevens
2360ed4abe
fix build ( #1861 )
2020-05-21 19:22:08 -04:00
James Agnew
ce5ade53d9
Fix #1855 - StructureDefinition search not working ( #1858 )
2020-05-21 09:35:37 -04:00
James Agnew
e07e071130
Avoid deserialization issues in subscription delivery ( #1856 )
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* Avoid deserialization issues in subscription delivery
* Add changelog
2020-05-21 05:47:39 -04:00
James Agnew
5b2181a563
Implement FHIR Patch ( #1850 )
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* Start working on FHIRPatch
* More work on fhirpatch
* Work on FHIR Patch
* Add patch
* Test fixes
* Test fixes
* Get tests fixed
* Chnage to trigger a build
* Compile fix
* Dependency version fixes
* Test fix
* COmpile fix
* Try to fix build
* Test fix attempt
* Another build attempt
* Another build tweak
* Cleanup
2020-05-20 19:43:55 -04:00
James Agnew
9aaf5ccd63
Fix expunge when using unique search param ( #1854 )
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* Fix expunge when using unique search param
* Add chaneglog
2020-05-20 15:58:53 -04:00
jamesagnew
8ab80e3529
Credit for #1853
2020-05-20 10:54:38 -04:00
James Agnew
c9c90b327c
Allow no read interceptor for partition ( #1851 )
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* Allow no read interceptor for partition
* Add changelog
* Test fix
2020-05-19 17:06:56 -04:00
jamesagnew
cc92bd7b07
Revert "Start working on FHIRPatch"
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This reverts commit b3f6e7d521
.
2020-05-17 11:56:50 -04:00
jamesagnew
b3f6e7d521
Start working on FHIRPatch
2020-05-17 11:44:06 -04:00
jamesagnew
52c8e3551c
Version bump to 5.1.0-SNAPSHOT
2020-05-15 14:43:32 -04:00
jamesagnew
fe0e07a313
Bump to 5.0.1
2020-05-15 05:47:01 -04:00
jamesagnew
9b1cd6cd5c
Add changelog
2020-05-15 05:45:01 -04:00
James Agnew
79a064dfd9
Optimize chain sql paths ( #1844 )
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* Start cleanup
* Almost workinf
* Possibly working!!
* Fixes
* Test fix
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/predicate/querystack/QueryRootStack.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/predicate/querystack/QueryRootStack.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/predicate/querystack/QueryRootStack.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Address review comments
* Add changelog
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-05-15 05:36:12 -04:00
jamesagnew
1d13e29ac0
Version bump to 5.1.0-SNAPSHOT
2020-05-12 20:04:20 -04:00
jamesagnew
d631ecff4a
Prepare for 5.0.0
2020-05-12 11:49:18 -04:00
jamesagnew
c7da4b0914
Build Cleanup
2020-05-11 13:25:58 -04:00
James Agnew
0c13a65871
Bump to latest Core version ( #1841 )
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* Start working on bumping core
* Work on tests
* Work on tests
* Bump core definitions
* Bump R5 defs
* Tweak changelog
* Test fix
2020-05-11 12:37:16 -04:00
jamesagnew
386f395e4b
Version bump 2 dependencies
2020-05-10 19:10:18 -04:00
jamesagnew
5ea94abde5
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2020-05-10 12:10:03 -04:00
James Agnew
9d8bd0d51e
Bump R4 definitions to 4.0.1 ( #1837 )
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* Bump R4 definitions to 4.0.1
* Add changelog
* Test fixes
2020-05-08 19:34:13 -04:00
jamesagnew
7f12f80358
Docs correction
2020-05-08 11:48:26 -04:00
James Agnew
6cc07b6689
Make binary storage work for bulk export ( #1836 )
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* Make binary storage work for bulk export
* Add changelog
* Build fixes
* Test fix
* Test fix
* Test fix
2020-05-07 19:20:22 -04:00
Simon Yun
e874abad47
Add Grand Rounds to HAPI FHIR Atlas
2020-05-06 13:47:26 -07:00
James Agnew
a77aa6a28e
Multitenancy Ticket 2 - #1813 ( #1821 )
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* Work on multitenancy
* Second ticket started
* More multitenancy work
* Work on tenancy security
* Work on multitenancy
* Test fixes
* Add docs
* cs tweak
* Multitenancy fixes
* Add debug log
* Fix build
* Add headers
* Add partition selection interceptor hook
* Update hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/api/Constants.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Account for review comments
* Resolve FIXMES
* Work on tests
* Test fixes
* A bit more cleanup
* Work on multitenancy
* Update hapi-fhir-docs/src/main/java/ca/uhn/hapi/fhir/docs/ClientExamples.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/docs/client/examples.md
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* Address review comments
* Allow disabling text modifier indexing
* Add changelog
* Docs fixes
* Address review comment
* Resolve merge conflicts
* Merge master
* Compile fix
* Test fix
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-05-05 15:12:15 -04:00
James Agnew
35c2b7a2c1
Allow disabling text modifier indexing ( #1831 )
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* Allow disabling text modifier indexing
* Add changelog
* Address review comment
* Resolve merge conflicts
2020-05-05 12:16:55 -04:00
James Agnew
91147cf6b0
Scope tag search to correct resource type ( #1829 )
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* failing _tag tests
* cleanup
* Scope tag query to correct resource type
* Changelog
* Test fix
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2020-05-05 11:09:46 -04:00
jamesagnew
ceae417d35
Credit for #1710
2020-05-04 05:42:32 -04:00
jamesagnew
394a47b83a
Fix YAML error
2020-05-01 13:03:59 -04:00
jamesagnew
586089fc69
Credit for #1749
2020-05-01 07:38:31 -04:00
jamesagnew
a786756169
Credit for #1812
2020-05-01 07:27:12 -04:00
jamesagnew
439a901e30
Credit for #1734
2020-05-01 05:56:47 -04:00
James Agnew
3d5a8bb3f8
Add UCUM support ( #1824 )
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* Add UCUM support
* Add changelog
* Some cleanup
* Test fix
* Add flywayDB callback
* Add hooks to schema migrator
2020-04-30 15:22:41 -04:00
Tadgh
8f8a8a3dc2
Merge branch 'master' into date-match-bug
2020-04-29 16:17:50 -07:00
jamesagnew
885a18e0d8
Credit for #1788
2020-04-29 09:12:36 -04:00