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6658 Commits

Author SHA1 Message Date
jamesagnew 962055e092 Undo extra logging in tests 2020-07-15 13:47:19 -04:00
James Agnew 077ee02771
Fix validation for enumerated ValueSets (#1982) 
* Allow code validation against enumerated VS

* Work on validation

* Work on this

* Work on tests

* Work on validation

* Work on tests

* Work on validation

* Test fixes

* Add changelog

* For a change

* Test fixes
 2020-07-15 13:38:14 -04:00
James Agnew 063bf4237c
Allow ConceptMap with no explicit group source/target (#1983) 
* Allow ConceptMap with no explicit group source/target

* Add changelog
 2020-07-15 12:57:10 -04:00
James Agnew 29bf6b8171
Fix a bug validating ValueSets (#1981) 
* Fix a buig validating ValueSets

* Test fix
 2020-07-15 09:25:34 -04:00
jamesagnew addcdc9269 Make method transactional 2020-07-14 19:12:40 -04:00
jamesagnew d6f6ec2d66 License headers 2020-07-13 16:57:24 -04:00
James Agnew baba4cc240
Avoid version conflicts on current writes (#1971) 
* Add auto retry of transactions

* Experiment in Maven build

* Transaction autoretry

* Work on transaction retries

* Work on transaction retry

* Work on transaction retry

* Fix tests

* Avoid version conflicts

* Add changelog

* Resolve LGTM issue

* FIx transaction scope error

* Test fixes

* Test fix

* Test fixes

* Test fix

* Test fixes
 2020-07-13 08:51:13 -04:00
Ken Stevens e565b1c948
done (#1976) 2020-07-10 15:08:50 -04:00
James Agnew 5c14a6c217
Revert pointless SQL optimization (#1977) 
* Revert pointless SQL optimization

* Fix tests
 2020-07-09 22:14:25 -04:00
Ken Stevens 50ae07acaa
stub out all migrations if an empty schema was initialized (#1975) 2020-07-09 20:18:54 -04:00
James Agnew 1449b9cb0a
Install NPM resources correctly (#1972) 
* Install NPM resources correctly

* Fix tests
 2020-07-09 18:37:55 -04:00
James Agnew c949349a41
Correctly validate ISO 3166 codes (#1967 update) (#1973) 
* Add tests

* Test fixes

* Fix tests

* Test fix

* One more test fix
 2020-07-09 18:34:26 -04:00
jamesagnew c40d15294d Credit for #1966 2020-07-08 10:44:52 -04:00
Ibrohim Kholilul Islam 7a44fa3eb3
Fix GraphQL Array of Argument should be ORed (#1966) 
* provide IQueryParameterOr instead of IQueryParameterType to params.add

* add tests
 2020-07-08 10:38:50 -04:00
Ken Stevens 1e2505e548
change migration to correct table. (#1970) 
* change migration to correct table.

QUESTION: Do we need to stub this migration and add new ones?

* fix variable name
 2020-07-07 05:45:39 -04:00
Ken Stevens 79862c449a
add migration cutpoint (#1968) 2020-07-06 16:12:44 -04:00
Tadgh 3081df3cbd
Merge pull request #1969 from jamesagnew/empi-interceptor-bug 
EMPI Storage interceptor bug fix
 2020-07-06 13:10:39 -07:00
jamesagnew 489bd77dd4 Make constraint name comparisons case insensitive 2020-07-06 14:58:03 -04:00
Tadgh 2f11a673e3 change test name 2020-07-06 11:53:40 -07:00
Tadgh be429299de Change string name 2020-07-06 11:46:20 -07:00
Tadgh 84da932187 fix test 2020-07-06 11:36:47 -07:00
jamesagnew b786006183 Credit for #1878 2020-07-06 13:46:30 -04:00
Joel Schneider (NMDP) 1266619e37
quick fix to avoid including duplicate copies of hapi-fhir-testpage-overlay classes (#1878) 2020-07-06 13:43:51 -04:00
jamesagnew 11ad41d472 Credit for #1893 2020-07-06 05:52:40 -04:00
Alexander Lukyanchikov df133d10f2
#1892 Add support for :of-type Token Modifier (#1893) 2020-07-06 05:50:44 -04:00
jamesagnew 9813c6915c Merge branch 'ConsultingMD-atlas-grand-rounds' 2020-07-06 05:45:35 -04:00
jamesagnew 2b5c834d96 Merge branch 'atlas-grand-rounds' of https://github.com/ConsultingMD/hapi-fhir into ConsultingMD-atlas-grand-rounds 2020-07-06 05:45:19 -04:00
Sumeet Chhetri 4c883cf741
Added an entry for Ohum/FHIR (#1930) 2020-07-06 05:43:20 -04:00
James Agnew 4b1546f002
Add support for ISO 3166 to validator (#1967) 
* Add ISO 3166 support

* Add support for ISO-3166

* Add changelog

* Test fixes
 2020-07-06 05:29:48 -04:00
James Agnew 6fb6675b1e
Resolve validation errors to ValueSet with UCUM (#1948) 
* Add tests for validation errors

* Work on validation errors

* Bump core version

* Fix validation errors

* Test fixes

* Add changelog

* Test fix

* Test fix

* Test fix
 2020-07-05 19:59:21 -04:00
jamesagnew 9e19b87e67 Fix build 2020-07-04 19:32:40 -04:00
James Agnew f356c7c385
Migrate to JUnit5 (#1952) 
* Work on junit

* Work on junit 5

* Work on junit 5

* Bump errorprone vcersion

* Work on tests

* Junit 5 tweaks

* Fixes

* Work on tests

* Work on junit5

* Work on tests

* Test fixes

* Work on junit5

* Test work

* Get junit5 working

* Test fix

* Work on tests

* WOrk on tests

* Work on tests

* fixes

* Compile fix

* One more tweak

* Compile fix

* Add changelog

* Fix compile error

* Compile fix
 2020-07-04 18:28:16 -04:00
James Agnew 290577ff3e
Remove unnecessary type predicate (#1963) 
* Remove unnecessary type predicate

* Add changelog
 2020-07-03 17:54:25 -04:00
IanMMarshall e23e222f80
Merge pull request #1960 from jamesagnew/im_20200630_code_system_load 
Accidentally merged pull request before pushing changes from code review
 2020-07-03 16:29:34 -04:00
ianmarshall b1ff6cbe37 Changes from code review 2020-07-03 14:25:24 -04:00
Tadgh 63bf9cca1b
Merge pull request #1961 from jamesagnew/bulk-intermittent 
Bulk intermittent bug
 2020-07-03 11:19:51 -07:00
Tadgh 4ff63e2493 Remove unnecessary logging. Spring batch already logs this 2020-07-03 10:21:04 -07:00
Tadgh d09f410b4d Tidy logging, increase timeout to 120 because clocks 2020-07-03 10:15:57 -07:00
Tadgh a84a41643d Increase awaitility timeout for bulk export of ALL resources 2020-07-03 10:08:34 -07:00
ianmarshall 4e5ca2ee15 Changes from code review 2020-07-03 13:08:11 -04:00
IanMMarshall 0e885064ce
Merge pull request #1958 from jamesagnew/im_20200630_code_system_load 
Im 20200630 code system load
 2020-07-03 13:06:42 -04:00
Tadgh 38cb526696 Add logging 2020-07-03 09:40:52 -07:00
ianmarshall 46abdfafe0 Merge remote-tracking branch 'remotes/origin/master' into im_20200630_code_system_load 2020-07-02 13:29:17 -04:00
jamesagnew aa1e46fdb0 Fix public hapi test server 2020-07-02 13:09:49 -04:00
jamesagnew ef86d26357 License header updates 2020-07-02 12:07:02 -04:00
jamesagnew a59b25c8c0 Fix startup failure on hapi.fhir.org 2020-07-02 12:06:33 -04:00
ianmarshall 557f732e17 Cleanup and improved Unit tests. 2020-07-02 12:03:15 -04:00
dependabot[bot] fb0029cc4b
Bump mysql-connector-java (#1956) 
Bumps [mysql-connector-java](https://github.com/mysql/mysql-connector-j) from 6.0.5 to 8.0.16.
- [Release notes](https://github.com/mysql/mysql-connector-j/releases)
- [Changelog](https://github.com/mysql/mysql-connector-j/blob/release/8.0/CHANGES)
- [Commits](https://github.com/mysql/mysql-connector-j/compare/6.0.5...8.0.16)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2020-07-01 18:30:07 -04:00
dependabot[bot] ef4b79da7e
Bump mysql-connector-java in /hapi-fhir-jpaserver-migrate (#1955) 
Bumps [mysql-connector-java](https://github.com/mysql/mysql-connector-j) from 6.0.5 to 8.0.16.
- [Release notes](https://github.com/mysql/mysql-connector-j/releases)
- [Changelog](https://github.com/mysql/mysql-connector-j/blob/release/8.0/CHANGES)
- [Commits](https://github.com/mysql/mysql-connector-j/compare/6.0.5...8.0.16)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2020-07-01 18:29:57 -04:00
dependabot[bot] d1ceb280fc
Bump mysql-connector-java (#1954) 
Bumps [mysql-connector-java](https://github.com/mysql/mysql-connector-j) from 5.1.40 to 8.0.16.
- [Release notes](https://github.com/mysql/mysql-connector-j/releases)
- [Changelog](https://github.com/mysql/mysql-connector-j/blob/release/8.0/CHANGES)
- [Commits](https://github.com/mysql/mysql-connector-j/compare/5.1.40...8.0.16)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2020-07-01 18:29:45 -04:00