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8628 Commits

Author SHA1 Message Date
TipzCM a474e88ed4
issue-2397 implementing the mdm expansion on everything and searches (#3044) 
* issue-2397 implementing the mdm expansion on everything and searches

* issue-2397 code cleanup and removal of test code

* issue-2397 some tests

* issue-2397 changelog added

* issue-2397 review fixes

* issue-2397 updated change log with example and fixed failing tests

* issue-2397 test fixing

* issue-2397 fixing test

* issue-2397 review fix

* issue 2397 fixing changelog file

Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
Co-authored-by: Tadgh <tadgh@cs.toronto.edu>
 2021-10-07 10:46:23 -04:00
jmarchionatto 71e2b82128
Issue 2851 upload terminology valueset parallel versioning (#3051) 
* Fix operations for 'loinc-all' ValueSet

* Fix tests

Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
 2021-10-06 20:56:30 +00:00
Tadgh bc2cd7cafc
premature optimization is the root of all evil (#3053) 2021-10-06 14:44:39 +00:00
Tadgh 59afbe086c
Allow canonical references to support treating given base URLs as local. (#3050) 
* Add failling test, works on #2843

* Partial hack to get this working

* Move implementation into pre-processing

* Add changelog

* Move implementation

* Minify Test

* Remove fixmes

* Tidying

* Ensure this only operates on STU versions which support canonical
 2021-10-05 11:09:49 -04:00
jamesagnew 2581cd1446 Bump postgres DB version 2021-10-04 10:54:33 -04:00
jamesagnew 15748f4d54 Add setters 2021-10-04 07:41:24 -04:00
James Agnew d320b78ae1
Improve synthea ingest performance (#3033) 
* Improve synthea ingest performance

* Tweaks

* Fix param splitting

* Update to test

* Add changelog

* Test fix

* Add some runtime checks

* Remove useless test

* Test fix
 2021-10-04 05:46:06 -04:00
jamesagnew d4f01ac4e7 License header updates 2021-10-03 20:20:04 -04:00
James Agnew eca725afa4
Improve versioned URL support for ValueSet expansion (#2994) 
* Add test

* Test fixes

* Work on expansion errors

* Fixes

* Test fixes

* Test fixes

* Test fixes

* Test fixes

* Test fixes

* Test fixes

* Test fixes

* Work on fix

* Test fixes

* Test fixes

* Test fix

* Cleanup

* Test fixes

* Remove accidental commit

* Test fixes

* Version bump

* Add changelog

* Fixes

* Test fix

* Fix conflicts
 2021-10-03 19:47:23 -04:00
James Agnew 95e853bdf7
Improve parallel model scanning (#3046) 
* Improve parallel model scanning

* Add changelog

* Resolve fixme

* Test fix
 2021-10-03 19:40:24 -04:00
Tadgh 53a2d3c1ac
Merge pull request #3038 from hapifhir/remove-parallel-non-gets 
Remove parallel non gets
 2021-09-28 17:56:12 -04:00
Tadgh 63ef58c0b9 Merge branch 'remove-parallel-non-gets' of github.com:hapifhir/hapi-fhir into remove-parallel-non-gets 2021-09-28 16:43:36 -04:00
Tadgh 040d09cfa6 Remvoe error in moving code over 2021-09-28 16:43:29 -04:00
Tadgh 6f36a0aab3
Merge branch 'master' into remove-parallel-non-gets 2021-09-28 10:17:38 -04:00
Tadgh cd1a4154c1 Merge branch 'remove-parallel-non-gets' of github.com:hapifhir/hapi-fhir into remove-parallel-non-gets 2021-09-28 09:55:13 -04:00
Tadgh 072c030c2d Remove modifications, defaults work 2021-09-28 09:55:06 -04:00
JasonRoberts-smile e99c470b74
Merge pull request #3023 from hapifhir/jr-20210922-narrowing-interceptor 
Jr 20210922 narrowing interceptor
 2021-09-28 09:54:50 -04:00
Tadgh ad05a5ec09
Merge branch 'master' into remove-parallel-non-gets 2021-09-28 09:43:01 -04:00
Jason Roberts 39ae66de16 Add tests for invalid inputs 2021-09-28 08:35:04 -04:00
Jason Roberts 58a2f23c0d Merge branch 'master' into jr-20210922-narrowing-interceptor 2021-09-28 07:41:39 -04:00
Tadgh 2a86b727fa
Merge pull request #3021 from hapifhir/3020_Add_documentation_for_$partition-management-create-partition 
[3020] add documentation for $partition-management-read-partition
 2021-09-27 16:41:50 -04:00
Tadgh 591286a9cc Add changelog 2021-09-27 15:37:59 -04:00
Tadgh dde0529b07 Remove extra semicolon 2021-09-27 15:36:17 -04:00
Tadgh 0c123384c7 add test for failing batch bug, remove bounding on queue 2021-09-27 15:34:19 -04:00
Tadgh 7dfe628551 remove parallelism from non-get batch operations 2021-09-27 15:32:03 -04:00
katie_smilecdr d121f6eff1 Merge branch 'master' into 3020_Add_documentation_for_$partition-management-create-partition 2021-09-27 15:10:19 -04:00
katie_smilecdr b86f596c80 [3020] add sample response in documentation 2021-09-27 15:09:44 -04:00
jmarchionatto bc93403364
Merge pull request #3036 from hapifhir/issue-2851-upload-terminology-valueset-parallel-versioning 
Issue 2851 upload terminology valueset parallel versioning
 2021-09-27 15:05:57 -04:00
juan.marchionatto 2dec5f0821 Add explicit brackets 2021-09-27 13:47:23 -04:00
juan.marchionatto b4343a9823 Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning 2021-09-27 09:48:15 -04:00
juan.marchionatto 00ceb3f35d Add tests 2021-09-27 09:47:05 -04:00
michaelabuckley 1a446d692d
Merge pull request #3035 from hapifhir/mb-fix-NoFt-tests 
Make our NoFt tests actually run without Ft.
 2021-09-24 20:23:00 -04:00
Michael Buckley bd2af629ac checkstyle - fixme 2021-09-24 18:19:46 -04:00
katie_smilecdr c5cacacb23 [3020] fix changelog 2021-09-24 16:55:03 -04:00
michaelabuckley 5ee5b08b50
Merge branch 'master' into mb-fix-NoFt-tests 2021-09-24 16:38:05 -04:00
Ken Stevens b1dd40fdba
Try commenting out clearAllStaticFieldsForUnitTest to see what happens (#3034) 
* Try commenting out clearAllStaticFieldsForUnitTest to see what happens

* Rename clearAllStaticFieldsForUnitTest to randomizeLocaleAndTimezone and only do that
 2021-09-24 16:01:28 -04:00
juan.marchionatto d03f9cb35b Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning 2021-09-24 15:40:22 -04:00
jmarchionatto 94d85ab13e
Merge pull request #3025 from hapifhir/issue-3017-remove-loincxml-file-from-application-used-as-fallback-when-loading-loinc-terminology 
Issue 3017 remove loincxml file from application used as fallback when loading loinc terminology
 2021-09-24 15:13:46 -04:00
juan.marchionatto eb9f29b3f3 Simplify code 2021-09-24 15:05:06 -04:00
Jason Roberts 626c6f855c handle queries on bare ids without explicit types 2021-09-24 14:57:05 -04:00
katie_smilecdr d067586607 [3020] add documentation/changelog 2021-09-24 14:49:07 -04:00
Jason Roberts 4a53d10c78 Merge branch 'master' into jr-20210922-narrowing-interceptor 2021-09-24 14:39:10 -04:00
Michael Buckley 11c5f7ee87 Some configs don't publish and FullText service at all. Make it optional. 2021-09-24 14:32:34 -04:00
Michael Buckley 79e2800f3e Fix cut-n-paste glitch in dstu2 NoFt 2021-09-24 13:48:01 -04:00
katie_smilecdr 8c145d1212 Merge branch 'master' into 3020_Add_documentation_for_$partition-management-create-partition 2021-09-24 13:01:38 -04:00
katie_smilecdr 6431ae4401 [3020] fix implementation/add tests 2021-09-24 13:00:05 -04:00
jmarchionatto a40a27bd46
Merge branch 'master' into issue-3017-remove-loincxml-file-from-application-used-as-fallback-when-loading-loinc-terminology 2021-09-24 12:58:44 -04:00
JasonRoberts-smile 8c2747f903
Merge pull request #3032 from hapifhir/jr-20210924-index-name-npe 
fix a null pointer exception thrown during database migration
 2021-09-24 12:29:05 -04:00
Michael Buckley db55837c3c Make our NoFt tests actually run without Ft. 
Hibernate search was always configured with a lucene heap engine in all JPA tests.
Added a new config param - hapi_test.enable_lucene - to disable with config params on the NoFt tests.
 2021-09-24 12:05:16 -04:00
Jason Roberts 81288d9526 improve test coverage 2021-09-24 11:08:55 -04:00