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hapi-fhir
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80 Commits

Author SHA1 Message Date
Tadgh b8c000b3a1 Rename queue to channel 2020-07-29 17:43:53 -07:00
Tadgh 30b517f0d5 Migrate the channel submitter to SubmitterConfig, (duh) 2020-07-29 17:21:36 -07:00
Tadgh bcc5c59d45 Move batch svc to the submitter 2020-07-29 17:05:57 -07:00
Ken Stevens 5bfe3ce15f move transactional method to persistence 2020-07-29 17:16:49 -04:00
Tadgh 102f936156 Rework into new person deleting service 2020-07-29 12:17:07 -07:00
Tadgh 2e48ded61b Add license, change bean name 2020-07-28 18:05:17 -07:00
Tadgh f6d44fe50c wip 2020-07-28 08:42:45 -07:00
Tadgh 606b642b1e Turns out expunge atomic integer didn't do what I expected for historical versions... 2020-07-27 17:29:27 -07:00
Tadgh 82dcc395ec Merge branch 'master' into batch-empi-job 2020-07-27 14:59:27 -07:00
Tadgh fac14240c8 Add circular reference handling, and DeleteConflict handling 2020-07-27 14:18:40 -07:00
Tadgh 7e694ded3f Add failing test showing issue with related persons 2020-07-24 17:18:59 -07:00
Tadgh 7fd690f830 Add test in provider with different empi json rules 2020-07-24 10:42:21 -07:00
Tadgh 31d0ed3ac1 remove question, put in PR instead 2020-07-23 18:09:10 -07:00
Tadgh 698b18eb2f Fix NPE in iterator, fix empi-rules.json, add extra tests 2020-07-23 18:01:08 -07:00
Tadgh 2da64119bb Resolve issue with test 2020-07-23 17:28:20 -07:00
Tadgh 6a5b96d05f Start with broken test for #1996 2020-07-23 15:52:12 -07:00
Tadgh 90e96c1fb4 Fix bug caused by Persons with >1 historical version 2020-07-23 14:35:28 -07:00
Tadgh 9491a3e499 Add DSTU3 clear operation 2020-07-23 09:37:11 -07:00
Ken Stevens 08cbac59cc
fix tests (#1993) 2020-07-23 11:01:54 -04:00
Gary Graham e9adebc412 Move SearchBuilderFactory into EmpiSearchParamSvc to avoid module loading issues 2020-07-22 16:19:55 -07:00
Tadgh 60e5d9783e Narrowing catch by LGTM 2020-07-22 14:00:39 -07:00
Tadgh 198385a7b4 Dead space 2020-07-22 12:01:34 -07:00
Tadgh bbe6d5600e Address review comments 2020-07-22 11:58:08 -07:00
Ken Stevens 160778d3fd
Empi docs (#1989) 
* Remove lines from image edges.  Thanks Max!

* fix case 4 docs
only mark possible match as eid if it was via an eid match
 2020-07-21 13:07:49 -04:00
Tadgh 249f5e5947 Add two new tests. Fix non-jupiter-tests 2020-07-21 08:51:18 -07:00
Tadgh e82451533f Move provider logic. Fix tests to reflect. Remove now-dead methods 2020-07-21 07:52:51 -07:00
Tadgh de9621602b Update provider and create test skeletons for empi batch run 2020-07-18 18:18:21 -07:00
Tadgh b79ed21672 Add forgotten bean 2020-07-18 13:36:31 -07:00
Tadgh 62b5221c3f Move Empi Batch work to the BaseHapiResourceProvider, allowing manual EMPI runs on a server/type/ID basis. 2020-07-18 13:36:14 -07:00
Tadgh 4fa4dd1c48 Update Javadocs 2020-07-17 13:39:39 -07:00
Tadgh fec50686ec Forgot to unregister interceptor 2020-07-17 13:18:27 -07:00
Tadgh e540e4b0a2 Minor addition to PointcutLatch to support an inline runnable 2020-07-17 12:06:19 -07:00
Tadgh aebdef1e3f Fix import issues 2020-07-17 09:36:08 -07:00
Tadgh 1e12c740f6 Merge branch 'master' into batch-empi-job 2020-07-17 09:28:10 -07:00
jamesagnew b57681da59 License header updates 2020-07-17 08:54:20 -04:00
Ken Stevens ebd6ca4b64
Empi 3 ruleset version (#1978) 
* add rule version

* add rule version

* Rough in model for Golden Record.

* Test Link Rule Version

* add eid match boolean

* added new fields to EmpiLink to provide more information about how the link was created

* add logging to check an edge case

* all tests pass

* wip with failing tests

* tests pass

* FIXME

* optimize imports

* test score in provider output

* FIXME

* FIXME

* Fix jpa test app context

* fix migration string length

* review feedback param name

* review feedback javadoc

* review feedback javadoc

* bean config reorganization for cdr

* add more tests
 2020-07-17 08:31:15 -04:00
Tadgh 6bb92717f5 Merge branch 'master' into batch-empi-job 2020-07-16 11:00:32 -07:00
Tadgh 31e9f140ad Fix operation name. Remove unnecessary beans 2020-07-16 09:48:58 -07:00
Tadgh acd881ca76 Adds queue submitter class, for simplicity of manual triggers of Empi Runs 2020-07-15 15:20:26 -07:00
Tadgh f965b26f0d add more tests for criteria conversion 2020-07-15 14:03:27 -07:00
Tadgh 80b59599fc wip 2020-07-15 12:27:49 -07:00
Tadgh 677bc5577b wip 2020-07-13 12:00:19 -07:00
James Agnew baba4cc240
Avoid version conflicts on current writes (#1971) 
* Add auto retry of transactions

* Experiment in Maven build

* Transaction autoretry

* Work on transaction retries

* Work on transaction retry

* Work on transaction retry

* Fix tests

* Avoid version conflicts

* Add changelog

* Resolve LGTM issue

* FIx transaction scope error

* Test fixes

* Test fix

* Test fixes

* Test fix

* Test fixes
 2020-07-13 08:51:13 -04:00
Tadgh c3b89b4ad5 Get basic tests running 2020-07-09 15:56:41 -07:00
Tadgh 5a7e1de367 Flesh out tests 2020-07-07 10:15:38 -07:00
Tadgh 86f2761580 Merge branch 'master' into batch-empi-job 2020-07-07 07:52:42 -07:00
Tadgh 5b402de581 Add EmpiTargetType to link 2020-07-07 07:51:41 -07:00
Tadgh b7e5705f57 Fix tests to cover other scenarios 2020-07-06 14:57:28 -07:00
Tadgh f82a53e6f9 Merge branch 'master' into batch-empi-job 2020-07-06 13:12:20 -07:00
Tadgh 2f11a673e3 change test name 2020-07-06 11:53:40 -07:00