Commit Graph

8582 Commits

Author SHA1 Message Date
Michael Buckley bd2af629ac checkstyle - fixme 2021-09-24 18:19:46 -04:00
michaelabuckley 5ee5b08b50
Merge branch 'master' into mb-fix-NoFt-tests 2021-09-24 16:38:05 -04:00
Ken Stevens b1dd40fdba
Try commenting out clearAllStaticFieldsForUnitTest to see what happens (#3034)
* Try commenting out clearAllStaticFieldsForUnitTest to see what happens

* Rename clearAllStaticFieldsForUnitTest to randomizeLocaleAndTimezone and only do that
2021-09-24 16:01:28 -04:00
jmarchionatto 94d85ab13e
Merge pull request #3025 from hapifhir/issue-3017-remove-loincxml-file-from-application-used-as-fallback-when-loading-loinc-terminology
Issue 3017 remove loincxml file from application used as fallback when loading loinc terminology
2021-09-24 15:13:46 -04:00
Michael Buckley 11c5f7ee87 Some configs don't publish and FullText service at all. Make it optional. 2021-09-24 14:32:34 -04:00
Michael Buckley 79e2800f3e Fix cut-n-paste glitch in dstu2 NoFt 2021-09-24 13:48:01 -04:00
jmarchionatto a40a27bd46
Merge branch 'master' into issue-3017-remove-loincxml-file-from-application-used-as-fallback-when-loading-loinc-terminology 2021-09-24 12:58:44 -04:00
JasonRoberts-smile 8c2747f903
Merge pull request #3032 from hapifhir/jr-20210924-index-name-npe
fix a null pointer exception thrown during database migration
2021-09-24 12:29:05 -04:00
Michael Buckley db55837c3c Make our NoFt tests actually run without Ft.
Hibernate search was always configured with a lucene heap engine in all JPA tests.
Added a new config param - hapi_test.enable_lucene - to disable with config params on the NoFt tests.
2021-09-24 12:05:16 -04:00
Jason Roberts 81288d9526 improve test coverage 2021-09-24 11:08:55 -04:00
Jason Roberts 4c28b1b552 fix npe 2021-09-24 09:46:48 -04:00
jmarchionatto 4ab60e2f9b
Merge branch 'master' into issue-3017-remove-loincxml-file-from-application-used-as-fallback-when-loading-loinc-terminology 2021-09-24 08:59:15 -04:00
Tadgh 79a3fb19b2
Merge pull request #3028 from hapifhir/ks-20210923-bulk-export-batch
support non-jpa batch
2021-09-24 08:56:08 -04:00
Ken Stevens 0db40c6118 support non-jpa batch 2021-09-24 00:39:15 -04:00
Ken Stevens 53c7476dae
hapi storage (#3024)
* first pass moving core storage classes to storage-api

* move term service apis

* nearly done

* rename hapi-fhir-storage-api to hapi-fhir-storage and move transaction processor

* rename hapi-fhir-storage-api to hapi-fhir-storage and move transaction processor

* create new SearchConstants class to store platform independent search constants

* move a couple of subscription services

* move transaction processor adapter to storage

* version bump

* move searchparam

* fix test

* fix compile includes

* fix text

* fix docs
2021-09-23 22:04:46 -04:00
juan.marchionatto 91d9101785 Merge branch 'master' into issue-3017-remove-loincxml-file-from-application-used-as-fallback-when-loading-loinc-terminology 2021-09-23 13:45:28 -04:00
juan.marchionatto d1e9c23c13 Remove loinc.xml file from application. Now it required as input for loinc upload. 2021-09-23 13:43:27 -04:00
jmarchionatto bc250e141d
Merge pull request #3008 from hapifhir/issue-2851-upload-terminology-valueset-parallel-versioning
Issue 2851 upload terminology valueset parallel versioning
2021-09-23 13:24:14 -04:00
juan.marchionatto 9c8fd26692 Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning 2021-09-23 11:56:44 -04:00
juan.marchionatto 751c5d0d05 Implement revision suggestions. Add changelog. 2021-09-23 11:55:50 -04:00
Tadgh a562a4f493
Merge pull request #3015 from hapifhir/3014-prevent-delete-expunge-cascade
fix for issue SMILE-3128: prevent delete _expunge and _cascade
2021-09-23 10:52:40 -04:00
Tadgh ad9e0f1c9a
Merge branch 'master' into 3014-prevent-delete-expunge-cascade 2021-09-23 09:33:04 -04:00
Jimmy Deng 2436f748aa fix test 2021-09-22 14:38:53 -04:00
Jimmy Deng f9796b9e2a fix test 2021-09-22 12:52:28 -04:00
Jimmy Deng 26ac649946 changelog 2021-09-22 11:11:10 -04:00
Jimmy Deng 9a18422173 fix review 2021-09-22 11:09:50 -04:00
Jimmy Deng 48f73fa1d1 typo 2021-09-22 10:25:57 -04:00
Jimmy Deng c913707599 added header check 2021-09-22 10:15:22 -04:00
Tadgh d4bb48c551
Merge pull request #2989 from hapifhir/add-device-to-patient-compartment
Enhance RuleBuilder to support additional Search Parameters that count as being "in" the patient compartment.
2021-09-22 09:59:54 -04:00
juan.marchionatto 81a4f0c78f Rename method for clarity. Increase test coverage. 2021-09-22 09:40:25 -04:00
juan.marchionatto fdf639d353 Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning 2021-09-22 09:25:48 -04:00
Justin Dar ad5297b714 fix for issue #3014 2021-09-21 13:09:08 -07:00
Tadgh a12ce73797 Add more tests 2021-09-21 15:31:36 -04:00
Tadgh b8ef2f6763 Add changes 2021-09-21 15:25:46 -04:00
James Agnew 7379dee3d8
Merge branch 'master' into add-device-to-patient-compartment 2021-09-21 14:38:39 -04:00
JasonRoberts-smile d5c6461e2c
Merge pull request #3013 from hapifhir/jr-20210921-mssql-data-migration
Fix MS SQLServer database migration
2021-09-21 14:02:57 -04:00
Jason Roberts 68b26f7a5e apply recommendations from code review 2021-09-21 12:28:15 -04:00
JasonRoberts-smile 645386c999
Apply suggestions from code review
Co-authored-by: Ken Stevens <khstevens@gmail.com>
2021-09-21 12:26:21 -04:00
Jason Roberts fa96c5b8be Merge branch 'master' into jr-20210921-mssql-data-migration 2021-09-21 12:22:56 -04:00
Ken Stevens 060791aeb4
hapi-fhir-storage-api (#3006)
* rename hapi-fhir-jpaserver-migrate to hapi-fhir-sql-migrate and move hapi-tasks into jpaserver-persistence

* rename hapi-fhir-jpaserver-api to hapi-fhir-storage-api

* move bulk import apis

* create hapi-fhir-jpa

* create hapi-fhir-jpa

* move CircularQueueCaptureQueriesListener to japi-fhir-jpa

* move mdm logs to storage-api

* move gziputil to storage-api

* move quartz scheduling to hapi-fhir-jpa

* move default subscription channel factory to storage-api

* consolidated batch constants

* correct accidental Logs change

* remove dependency of cdr-api on cdr-persistence

* fix javadoc

* pom descriptions

* review feedback
2021-09-21 15:36:08 +00:00
Jason Roberts b6c8658f8c Fix MS SQLServer database migration 2021-09-21 10:42:59 -04:00
juan.marchionatto 371484a4ea Fix test to add now required id to loinc CodeSystem creation 2021-09-20 17:19:31 -04:00
juan.marchionatto 3d5c863276 Revert creation of test utility class finally not needed 2021-09-20 17:18:45 -04:00
juan.marchionatto 9c790a7374 Revert creation of test utility class finally not needed 2021-09-20 17:18:11 -04:00
juan.marchionatto 8a1d95f348 Add service to get CodeSystem from its forcedId without forcing rollback by ResourceNotFoundException in case not found 2021-09-20 17:14:42 -04:00
Johnson Lu f1f9c672ad
3110 zh disallow unknown extensions (#3009)
* Added allowKnownExtensionsOnly() method such which calls setAnyExtensionsAllowed() to set myAnyExtensionsAllowed to false and modified changelogs to add entry for this ticket.

* Modified docs to remove description for .allowAnyExtensions() and included it within a description for .allowKnownExtensionsOnly() and also added test for .allowKnownExtensionsOnly()

* refactored allowKnownExtensionsOnly() to rejectUnknownExtensions()
2021-09-20 15:40:56 -04:00
juan.marchionatto cf704124f2 Merge branch 'issue-2851-upload-terminology-valueset-parallel-versioning' of github.com:hapifhir/hapi-fhir into issue-2851-upload-terminology-valueset-parallel-versioning 2021-09-20 11:20:19 -04:00
juan.marchionatto 1492b9220a Add test comment 2021-09-20 11:15:53 -04:00
juan.marchionatto d706caf949 merge master in 2021-09-20 11:08:17 -04:00
jmarchionatto 804309eaaf
Merge branch 'master' into issue-2851-upload-terminology-valueset-parallel-versioning 2021-09-20 09:25:06 -04:00