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hapi-fhir
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703 Commits

Author SHA1 Message Date
jamesagnew e9cb518012 Fix teerm sevice indexing 2016-06-26 23:10:02 -04:00
jamesagnew 556058a7b7 Tests passing 2016-06-25 10:55:31 -04:00
James Agnew db0a208927 Work on terminology importing 2016-06-24 18:40:44 -04:00
jamesagnew 2e8c20dc83 More work on terminology services, and add support to operations to AuthorizationInterceptor 2016-06-20 07:19:08 -04:00
jamesagnew 36505c60d8 More work on term service importing 2016-06-19 10:35:27 -04:00
jamesagnew a7cbb5c022 More test coverage 2016-06-18 13:32:45 -04:00
jamesagnew b3d8d453de Improve test coverage and clean up UnclassifiedServerFailureException processing 2016-06-18 10:37:43 -04:00
jamesagnew 785ce1deb9 Remove some dead code and improve test coverage 2016-06-17 07:40:17 -04:00
jamesagnew dcecde5db9 Improve test coverage 2016-06-16 22:52:10 -04:00
jamesagnew 9392d8c104 Add logging to test 2016-06-15 22:30:03 -04:00
James Agnew 1683cf8cef Switch to jacoco 2016-06-15 17:34:50 -04:00
James Agnew e2f1beef2c Fix some tests 2016-06-14 22:03:24 -04:00
James Agnew f3dcc3e893 Add lots of tests 2016-06-14 17:57:08 -04:00
James Agnew 1166a2ee67 Work on support for _at parameter in history operation 2016-06-13 07:31:25 -05:00
James Agnew 23840ecb7a Fix some tests 2016-06-11 06:43:27 -05:00
James Agnew 1d2aee3dbe Try to fix tests 2016-06-10 22:43:00 -05:00
James Agnew fd8d67b9cd Fix more unit tests for #380 2016-06-10 18:57:44 -05:00
James Agnew a3484f84c1 Work on #381 - Still need to apply these changes to STU3 type 2016-06-09 21:48:53 -04:00
James Agnew 0a2b4290ed Fix #370 - Validation failure when validating certain STU3 resources 2016-06-08 14:21:18 -07:00
James Agnew 7e57aed5d6 Significant performance enhancements for context startup 2016-06-06 11:15:11 -07:00
James Agnew 99568a4b30 Clean up client fluent param types and add some test coverage 2016-06-05 11:33:43 -04:00
James Agnew 87eabe6bf8 More work on terminology server 2016-06-05 09:40:06 -04:00
jamesagnew f4b9c6423c Work on terminology service 2016-06-04 12:16:33 -04:00
jamesagnew 32cebb2a9f More terminology service work 2016-06-03 08:16:40 -04:00
jamesagnew 1b8843aa5e More work on terminology service 2016-06-01 09:10:47 -04:00
jamesagnew 820d1e0165 Fix build 2016-05-30 06:38:40 -04:00
James Agnew f45ad117fe Improve error messages for invalid validate request 2016-05-29 22:23:30 -04:00
James Agnew a306e3136f Try to fix build 2016-05-29 18:45:42 -04:00
James Agnew 9fe9cc1e4c Sync RI and fix tests 2016-05-29 17:52:26 -04:00
James Agnew eb3b656a5f Syn RI - Build still failing :( 2016-05-28 12:53:59 -04:00
James Agnew fd7f9a9b98 Auto close contextx in JPA tests 2016-05-27 10:27:32 -04:00
jamesagnew cd2af98064 Add method to upload SCT to JPA server 2016-05-27 08:56:36 -04:00
jamesagnew 69266dc7d0 Add terminology uploader 2016-05-26 22:18:12 -04:00
jamesagnew badcbfc0ee More work on SNOMED CT terminology loader 2016-05-26 07:53:36 -04:00
jamesagnew 35ffbf1568 Sync DSTU2 validator with RI 2016-05-24 09:22:16 -04:00
jamesagnew efe9cd1dd1 Work on term svc 2016-05-24 06:34:06 -04:00
jamesagnew 635398a754 Update reindexing 2016-05-22 18:22:49 -04:00
jamesagnew de65184afb Fix tests 2016-05-21 20:52:37 -04:00
jamesagnew 3d8776f6ed Fix #363 - Allow remote references in JPA resources 2016-05-21 12:58:04 -04:00
jamesagnew 81d68b07f8 Work on term svc 2016-05-19 06:15:58 -04:00
James Agnew 6c3446dee1 Fix build 2016-05-17 11:30:57 -04:00
jamesagnew ddb35d0faa Merge branch 'term_svc' of github.com:jamesagnew/hapi-fhir into term_svc 2016-05-17 09:05:47 -04:00
jamesagnew 78fa6eaeaf More work on terminology service 2016-05-17 09:05:37 -04:00
James Agnew 7942d69d5d Accept conditional updates with _id as parameter 2016-05-16 19:11:25 -04:00
jamesagnew c7d191dc38 Fix all tests 2016-05-14 16:59:31 -04:00
James Agnew 309b67c010 Fix tests 2016-05-13 19:37:49 -04:00
James Agnew d5e2170595 Don't discard _count from parameters when method has @Count 2016-05-13 19:13:39 -04:00
James Agnew 563f4e4c46 Treat date eq params correctly 2016-05-13 18:49:41 -04:00
James Agnew abd8bc2f14 Work on term svc 2016-05-13 17:40:56 -04:00
James Agnew c94f4bb19b Work on term services 2016-05-11 06:30:45 -04:00
James Agnew 3e77d3e37e Add _has support (this is an experimental parameter being tested) 2016-05-10 11:47:30 -04:00
James Agnew bca8589177 Index DSTU3 timing datatypes 2016-05-09 16:32:31 -04:00
James Agnew 975dfe4fa4 Fix build 2016-05-09 13:10:12 -04:00
James Agnew 061243b5c7 Allow delete bundle to contain multiple deletes for the same resource 2016-05-08 13:11:55 -04:00
James Agnew e1ab2856e0 Fix build 2016-05-08 10:29:08 -04:00
James Agnew adeb15809b Fix validator for documents 2016-05-07 16:47:34 -04:00
James Agnew af2b702aa4 Fixes from Montreal connectathon 2016-05-07 14:24:33 -04:00
James Agnew 4ae4b1a8d8 Support composite parametrs with quantity type in JPA 2016-05-06 18:43:07 -04:00
James Agnew 82c1e687fd Fix NPE in LoggingInterceptor 2016-05-04 11:48:50 -04:00
James Agnew 7429a382dd Fix test 2016-05-03 10:12:03 -04:00
jamesagnew cce0ce6b8e Add parser for URL parameters to avoid Servlets using ISO-8859-1 instead of UTF-8 2016-05-03 08:58:56 -04:00
jamesagnew dcd32b6127 Correctly handle search parameter target types in JPA 2016-05-03 07:03:44 -04:00
James Agnew 3e8638a65f Fix tests 2016-05-02 19:03:36 -04:00
James Agnew dd95a52240 Get fluentpath entirely working in JPA 2016-05-02 18:04:42 -04:00
James Agnew 804149205a Work on getting tests passing 2016-05-02 11:42:55 -04:00
jamesagnew 5086145132 Add targets to search parameters 2016-05-02 08:10:43 -04:00
jamesagnew 2bc1950bc1 JPA server transactions sometimes created an incorrect resource reference if a resource being saved contained references that had a display value but not an actual reference. Thanks to David Hay for reporting! 2016-04-29 09:21:12 -04:00
jamesagnew d45a9b67dc Allow forced IDs to be reused between resource types 2016-04-24 19:24:55 -04:00
jamesagnew 38e80531bb Bump version to 1.6-SNAPSHOT 2016-04-22 07:05:05 -04:00
jamesagnew dd3f1dd33c Fix #345 - ResponseValidatingInterceptor throws an exception with response has no content 2016-04-22 07:04:14 -04:00
jamesagnew 246a7c5e16 Fix test 2016-04-21 07:51:14 -04:00
James Agnew a8b121d868 Try to fix tests 2016-04-20 09:03:43 -04:00
James Agnew 81fa46820a Correctly support _summary=search option 2016-04-19 21:58:20 -04:00
jamesagnew 59c44a3b0b More test fixes 2016-04-17 20:57:27 -04:00
jamesagnew 12a66a9438 More test fixing 2016-04-17 20:02:50 -04:00
jamesagnew f3a41570d3 Try to get tests workign on Travis.. yet again 2016-04-17 19:25:11 -04:00
jamesagnew 846e216c04 Fix tests 2016-04-17 12:58:36 -04:00
jamesagnew 3f2b5fdeb7 Get security interceptor working 2016-04-16 10:22:43 -04:00
jamesagnew 533c0c87ab Fix tests 2016-04-14 09:14:32 -04:00
jamesagnew 8a37ed3b59 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-04-14 06:38:08 -04:00
jamesagnew 0780b7e472 Add tests 2016-04-14 06:36:29 -04:00
James Agnew a090f5481f Try to get cobertura working 2016-04-13 10:33:58 -04:00
jamesagnew d7c683f6b9 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-04-11 09:08:34 -04:00
jamesagnew 2f37015d57 Clean up parsers so that elements are always encoded according to their order in the structures that contain them 2016-04-11 08:36:12 -04:00
James Agnew 88157fe1a6 Test data uploader fixes 2016-04-08 16:31:42 -04:00
jamesagnew 8588bdfd1f Fix #331 - Don't split paths on or within words 2016-04-07 10:53:49 -04:00
jamesagnew b81a343f5d Add support for JPA searches with _tag:not=foo 2016-04-07 09:50:05 -04:00
jamesagnew ad34e38dee Work on _tag:not=foo 2016-04-06 07:55:42 -04:00
James Agnew 0e8962d18c Add license headers 2016-04-05 16:34:55 -04:00
jamesagnew 18b3d0df65 Update to DSTU3 Montreal definitions 2016-04-03 18:14:31 -04:00
James Agnew 19c00a3620 Try to reduce memory use for Travis 2016-04-01 17:09:30 -04:00
James Agnew 21b42acc94 Update licenses 2016-03-29 13:01:51 -04:00
James Agnew 01b62a9e11 Add test for #316 2016-03-28 21:00:53 -04:00
James Agnew 46ba27ec8f Work on security interceptor 2016-03-28 20:51:27 -04:00
James Agnew bba9f5b584 Try to avoid deadlocks in complicated queries 2016-03-27 09:38:01 -04:00
James Agnew 1aebff9a43 Add RES_ID indexes to help performance searchin across large datasets 2016-03-27 08:59:39 -04:00
James Agnew f9fa6265df Correctly handle JPA search by token with system but no code 2016-03-25 16:20:43 +01:00
James Agnew c8173810f4 Attempt to correct build issues 2016-03-16 18:00:57 -04:00
James Agnew 3922ff026e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-03-16 17:42:54 -04:00
jamesagnew c80b29fc45 Fix test 2016-03-16 08:13:35 -04:00
jamesagnew 9aa7eea274 Add mode to parser to force it to not encode certain elements when serializing 2016-03-16 07:53:21 -04:00
James Agnew 9c8d9db7e6 Use separate index columns 2016-03-15 10:35:24 -04:00
jamesagnew 96d6fa1b8a Work on terminology services 2016-03-15 10:03:22 -04:00
James Agnew 00ced6a652 Improve performance of _lastUpdated queries in JPA server 2016-03-14 06:31:45 -04:00
James Agnew 6ddf91d9e2 Correctly handle extended operation in annotation based client where the 
response is a raw resource and not a Parameters resource
 2016-03-12 15:10:02 -05:00
James Agnew ce253bed70 Properly deserialize bound codes 2016-03-12 13:23:55 -05:00
jamesagnew 232afee955 Improved error messages for #305 2016-03-11 07:56:00 -05:00
jamesagnew ed92f64e52 Fix #305 - Don't allow update resource body IDs to be missing or incorrect 2016-03-10 07:44:05 -05:00
jamesagnew 990ef16f78 Adding a test 2016-03-10 06:56:51 -05:00
jamesagnew 3897167518 Return correct bundle type on $everything operation 2016-03-09 23:11:40 -05:00
James Agnew 6f79f6c5e2 Keep the complete resource history in the history table, including the 
current version
 2016-03-09 15:34:49 -05:00
James Agnew 3bfcb57783 Page JPA search results to the database 2016-03-07 07:23:44 -05:00
James Agnew 8de41ca8b4 Attempting to reduce memory usage during tests 2016-03-06 14:38:18 -05:00
jamesagnew 99a4b2c29e Refactor JPA SearchBuilder 2016-03-05 20:46:04 -05:00
jamesagnew 5078b6aebe Remove unneeded files from Git 2016-02-28 14:06:59 -05:00
jamesagnew 1da5855c9c Add Eclipse files to git 2016-02-28 14:02:29 -05:00
jamesagnew 3f363eff9f Fix compile issues from merge 2016-02-27 09:42:15 -05:00
James Agnew 7fdbee6f21 Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-02-26 18:20:32 -05:00
James Agnew 39f6420066 Start working on compartment support 2016-02-26 18:16:35 -05:00
James Agnew 1ba0ae3960 Support inline match URL references, per Simone's requast for the next 
connectathon
 2016-02-23 13:12:30 -08:00
jamesagnew 6cc60624c6 Fix comment 2016-02-17 08:50:35 -05:00
jamesagnew 4975d212fa Add userdata map to interceptors which can be passed around 2016-02-17 08:05:55 -05:00
jamesagnew 9b304748ad Work on terminology service 2016-02-16 21:29:00 -05:00
jamesagnew 1f875c1ca6 Try to fix build 2016-02-15 11:22:19 -05:00
jamesagnew c1141eb18f Reorganize how search param prefixes are handled and modelled based on new DSTU2 style prefixes 2016-02-15 10:05:39 -05:00
jamesagnew 23f9292b50 Add support for comments in XML and JSON parsing/encoding 2016-02-08 22:05:17 -05:00
James Agnew f21851099c Version bump 2016-02-08 13:59:09 -05:00
James Agnew 68b816dce7 Prepare for 1.4 release 2016-02-03 16:56:32 -05:00
James Agnew e0e52f96c6 Version bump to 1.4 (finally!) 2016-02-03 15:25:32 -05:00
jamesagnew 32daeb6f58 Switch DSTU2.1 to DSTU3 per FMB's decision 2016-02-01 08:55:58 -05:00
James Agnew 914f615b8e Merge branch 'master' of github.com:jamesagnew/hapi-fhir 2016-01-28 11:35:16 -05:00
James Agnew 7ed14d538a Remove warning 2016-01-24 14:53:40 -05:00
jamesagnew 944afc2785 Add better constructors for date types 2016-01-20 07:40:57 -05:00
James Agnew f9960b22d5 Clean up validation 2016-01-15 18:44:28 -05:00
James Agnew d290110126 Fix validation 2016-01-15 18:02:20 -05:00
James Agnew 589059256f Correct issues uncovered during connectathon 2016-01-11 07:42:13 -05:00
James Agnew 552842e547 Validator enhancements 2016-01-08 16:23:27 -05:00
jamesagnew e436254c32 More fixing build 2016-01-08 09:07:59 -05:00
jamesagnew bf2e12e22c More tweaking for stupid travis 2016-01-08 08:26:53 -05:00
jamesagnew fbcf366ffa Try to reduce unit test memory for Travis 2016-01-07 23:03:54 -05:00
jamesagnew cabdde8914 Still trying to get travis working! 2016-01-07 21:13:17 -05:00
James Agnew 50a9995c55 Validator fixes 2016-01-07 18:37:15 -05:00
James Agnew 479da24cfb Bump license files 2016-01-07 08:50:07 -05:00
James Agnew a54cb06c03 More travis cleanup 2016-01-06 14:02:20 -05:00
James Agnew 0491dbe654 More travis 2016-01-06 10:25:40 -05:00
James Agnew 7005cd52d9 Performance tweaks to the validator and get the DSTU2.1 endpoint working 
with validation
 2016-01-04 17:57:00 -05:00
jamesagnew 685bd9345b Add request/response validator interceptors 2016-01-03 21:52:11 -05:00
jamesagnew ccc71c3bd3 Tests should be passing now 2016-01-03 00:19:16 -05:00
jamesagnew 5789db8743 Remove dependency on cobertura at compile time 2016-01-02 10:55:52 -05:00
jamesagnew 718a26671f DSTU2.1 structures working 2016-01-01 16:59:19 -05:00