honeymoose
/
hapi-fhir
mirror of https://github.com/hapifhir/hapi-fhir.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity
6,105 Commits 682 Branches 131 Tags 1.2 GiB
Commit Graph

2432 Commits

Author SHA1 Message Date
jamesagnew a5257f0fa8 Add new indexing extractor method 2020-03-19 20:22:30 -04:00
James Agnew bde7c356fe
Implement Jackson parser/serializer (#1733) 
* [dev] Integration of a Jackson serializer and deserializer - first stage

* [fix] Fixed some serializing issues
[improve] Improved the processing, removed the loggers

* [clean] Removed the JacksonSerializer class, replaced all the Gson classes with Jackson classes

* [clean] Small cleanup

* [improve] Throw a ConfigurationException if the JsonGenerator cannot be created

* [improve] Use the ObjectMapper's `readTree` instead of `readValue`

* [dev] Latest fixes and improvements

* [dev] Use the Jackson serializer

* [clean] Removed the ObjectMapper configuration, for now

* [fix] Use the GsonStructure also for the parsing of a FHIR resource

* [clean] Removed the LinkedList usage

* Work on preparing for merge of #1673

* Resolve build errors

* Work on parser integration

* Tests passing

* Resolve fixme

* CLeanup

* Fix dependency

Co-authored-by: Bogdan Solga <bogdan.solga@gmail.com>
 2020-03-17 17:27:26 -04:00
Tadgh 4583cb9939
Merge pull request #1760 from jamesagnew/bugfix/1752-support-chained-parameters-inside-reverse-chained-parameter 
Bugfix/1752 support chained parameters inside reverse chained parameter
 2020-03-17 13:27:20 -07:00
jamesagnew 4c1bbd01cb Intermittent test fix 2020-03-17 14:19:36 -04:00
Tadgh 3eb09b15f0 Merge branch 'master' into bugfix/1752-support-chained-parameters-inside-reverse-chained-parameter 2020-03-17 10:32:43 -07:00
James Agnew 22413911bf
Validation api changes (#1719) 
* Validation enhancements

* Work on validation api reworking

* Keep working on validation API

* Keep working on new term API

* Work on validation api

* Ongoing work on validation

* Work on integrating validation

* Work on validation API

* Add to validation API

* Work on validation

* Work on API

* Work on validation

* Work on validation API

* Work on validation API

* Work on validation api

* Work on validation API

* Work on validation api

* Validation API changes

* Work on API

* More work on validationo API

* Work on validation API

* FIxes

* WOrk on validation api

* Work on validation API

* Tests passing!

* More cleanup

* More validation API changes

* Fix intermittent test failure

* Package reorg

* Validation API work

* Work on doocumentation

* Work on API

* More work on new validation API

* Fix errorprone-reported error

* Test fixes

* Documentation updates

* Documentation tweaks

* Work on API

* Bean name adjustments

* Build fixes

* Some test fixes
 2020-03-17 13:28:59 -04:00
James Agnew 9305bef4ef
Remove useless migrator task generics (#1687) 
* Remove useless migrator task generics

* Clean a couple of compile errors

* Try to fix intermittent
 2020-03-17 13:28:43 -04:00
James Agnew 288abe4504
Improve efficiency in search deleting (#1759) 
* Improve efficiency in search deleting

* Changelog

* Address review comments
 2020-03-17 12:33:38 -04:00
James Agnew 5867d62d62
Avoid duplicate predicate in _id queries (#1761) 
* Avoid duplicate predicate in _id queries

* Add changelog

* Change to trigger CI

* Address review comments
 2020-03-17 11:12:58 -04:00
Tadgh 6f872ffb51 Minor refactor 2020-03-13 19:15:46 -07:00
Tadgh a39ac886af Fix error while resolving rebase 2020-03-13 18:43:43 -07:00
Tadgh 4777d75e6b Merge branch 'master' into bugfix/1752-support-chained-parameters-inside-reverse-chained-parameter 2020-03-13 18:40:11 -07:00
Tadgh b80e71773d Tidy, fix up tests 2020-03-13 18:36:43 -07:00
Tadgh d91cb7524c Fix up whitespace 2020-03-13 15:30:49 -07:00
Tadgh 03567c5831 Add perftrace. Remove regex 2020-03-13 15:29:48 -07:00
Ken Stevens 6b019492fe
Merge pull request #1758 from jamesagnew/ks-20200312-json-annotation 
moved common Json annotations out into an interface
 2020-03-13 15:58:21 -04:00
Tadgh 74fd2c1519 wip 2020-03-13 11:28:44 -07:00
jamesagnew 72b9d9a350 FIx spelling mistake 2020-03-13 09:19:45 -04:00
James Agnew 1dc5d89013
Optmize forced ID resolution (#1754) 
* Add forced ID caching

* Work on id optimization

* Test fixes

* More optimization work

* Add some docs

* Work on docs

* Test fixes

* Test fixes

* Test fixes

* Address review comments

* Compile fix
 2020-03-12 17:12:50 -04:00
Ken Stevens ecf5284c87 moved common Json annotations out into an interface 2020-03-12 13:36:34 -04:00
Tadgh c3ceffbd72 wip 2020-03-09 16:05:41 -07:00
Tadgh e38ec3e3dd Fix typo 2020-03-09 14:57:53 -07:00
Tadgh 12412a7be9 Add query capturing to query 2020-03-09 13:58:59 -07:00
Tadgh 59d1603597 Some variable renaming. Adds some questions. 2020-03-09 13:51:47 -07:00
Tadgh aca4bcfaad Minor refactoring for readability 2020-03-06 14:22:31 -08:00
Tadgh b299d0b63f Fix Typos, reduce code duplication 
* Change Two streams into one.
* Fix typos.
* Begin Writing docstrings
* Rename variables for clarity
 2020-03-06 11:39:39 -08:00
Tadgh 0acfc51082 Split test into two tests, one of which passes, one of which fails, showing the missing functionality 2020-03-05 16:38:42 -08:00
Ken Stevens 9b37ba35d0
Merge pull request #1747 from jamesagnew/ks-20200303-bulk-export-filter 
fixed a copy/paste error in bulk export with test
 2020-03-03 19:54:26 -05:00
Ken Stevens e819d40414 fix near searching for R4 2020-03-03 18:33:19 -05:00
Ken Stevens d104fbdf7d fixed a copy/paste error in bulk export with test 2020-03-03 16:40:31 -05:00
Ken Stevens 705735b9c0 review feedback: javadoc 2020-03-03 13:29:10 -05:00
Ken Stevens 5b5ef08500 Merge remote-tracking branch 'remotes/origin/master' into ks-20200302-near-chain 2020-03-03 09:44:52 -05:00
James Agnew 58b5bd9664
Limit type on _has query (#1743) 
* Limit type on _has query

* Add changelog
 2020-03-03 08:28:38 -05:00
James Agnew 3c2c1dab2e
Error on missing profile validation (#1742) 
* Error on missing profile validation

* Add changelog

* Test fixes
 2020-03-03 08:28:26 -05:00
Ken Stevens a56df03055 restrict near-distance extraction to DSTU3 2020-03-02 21:50:57 -05:00
Ken Stevens 4e1be80525 fixme 2020-03-02 21:39:28 -05:00
Ken Stevens d1b54a9668 pre-review cleanup 2020-03-02 21:32:27 -05:00
Ken Stevens 27dcafe4f2 all but unit tests 2020-03-02 21:27:50 -05:00
Ken Stevens 24acb57f3b began with failing test. 
test now passes.
 2020-03-02 17:56:25 -05:00
Tadgh 8d9119faef Rework span name 2020-03-02 14:37:09 -08:00
Gary Graham ed7b9fc6b6 Initial attempt at integrating elastic APM for search performance 2020-02-28 16:09:16 -05:00
James Agnew 8c78e465b1
Defer large term delta adds (#1736) 
* Defer large term delta adds

* Add changelog
 2020-02-28 14:41:15 -05:00
James Agnew 5bc554949b
Remove deleted resources from cached search results (#1732) 
* Remove deleted resources from cached search results

* Add changelog

* Add tests
 2020-02-28 10:57:26 -05:00
James Agnew cb9906580e
Index canonical references (#1728) 
* Index canonical references

* Add changelog

* Fix compile error

* Add whitespace
 2020-02-25 21:45:46 -05:00
James Agnew b2b0ff22b4
Collapse date joins (#1726) 
* Collapse date joins

* Add changelog

* Address review comments

* Add whitespace

* fix test

Co-authored-by: Ken Stevens <ken.stevens@sympatico.ca>
 2020-02-25 17:17:13 -05:00
Ken Stevens b33ad73d46 switch subscriptionchannelfactory to autowire 2020-02-24 14:28:14 -05:00
Ken Stevens 41b5eb2484 Switching cdrsubscribablefactory from @ComponentScan to @Bean 2020-02-23 15:43:30 -05:00
j-chan c0811376b7
Moved TranslateRawParameters method from BaseHapiFhirResourceDao to BaseStorageDao (#1722) 2020-02-20 10:52:43 -05:00
James Agnew 6200cd2ddc Add test asserts 2020-02-19 21:21:22 -05:00
James Agnew 79ad0aebb5 Add a test 2020-02-19 18:01:35 -05:00