672902486a
optimize imports
2020-01-24 13:07:19 -05:00
4ba91e0797
remove getDao() from Dao
2020-01-24 13:01:58 -05:00
9b0f850cf4
remove newSearchBuilder from dao
2020-01-24 13:01:35 -05:00
16cb9a74e4
Remove newSearchBuilder() from BaseHapiFhirDao
2020-01-24 12:19:08 -05:00
b465a7b781
final cleanup
2020-01-23 19:20:51 -05:00
01bc941f5f
Optimize imports
2020-01-23 19:15:30 -05:00
e031ad203e
FIXME
2020-01-23 19:12:05 -05:00
99949629a8
FIXME
2020-01-23 18:49:09 -05:00
3e28047f78
fix tests
2020-01-23 18:27:35 -05:00
a687d7c9c1
testSearchResourceLinkWithChain is failing
2020-01-23 17:38:59 -05:00
6ca97df1c9
fix npe
2020-01-23 16:20:53 -05:00
8114419110
fix npe
2020-01-23 16:06:15 -05:00
48a71d6649
fix npe
2020-01-23 15:58:13 -05:00
d2ef5555fe
app context loads
2020-01-23 15:48:25 -05:00
ab74e66870
compiles. now to run the tests...
2020-01-23 15:43:41 -05:00
49743352a6
remove unused enum
2020-01-23 14:28:10 -05:00
c9fe68c5ab
inlined single use methods
2020-01-23 14:21:07 -05:00
e99402bd38
Almost done refactor. Just need to separate state from service.
2020-01-23 14:06:09 -05:00
4c53333539
started to refactor predicates out of SearchBuilder
2020-01-23 12:00:12 -05:00
e6f5af01ed
convert degrees to kilometers for near calculation
2020-01-22 16:55:19 -05:00
8b8088a3a2
begin with failing test
2020-01-22 15:06:39 -05:00
b07b87954d
r4 works. But distance calculation still needs to be fixed.
2020-01-22 12:00:09 -05:00
9413e8f198
r4 works. But distance calculation still needs to be fixed.
2020-01-22 11:59:03 -05:00
5da2823553
add negative test
2020-01-22 09:25:43 -05:00
6cebb56f13
testing complete. Now just need pre-review cleanup.
2020-01-21 17:06:19 -05:00
12dfac927e
moar tests
2020-01-21 16:53:20 -05:00
04b60a4a16
no distance and zero distance tested
2020-01-21 16:18:42 -05:00
992b62151b
yay box search works!
2020-01-21 16:04:34 -05:00
3cb9a9f4a2
added asserts
2020-01-21 15:45:41 -05:00
b463929c28
parse nearDistance into a special search parameter field so it's available when we're adding the near parameter
2020-01-21 15:38:25 -05:00
a961a7c022
begin with failing test
2020-01-21 14:39:00 -05:00
eca21bec3e
exact coord matching works now
2020-01-21 14:30:51 -05:00
299e1e35e1
removed coordextractor and moved to token (looks cleaner and more in line with how the other ones are parsed)
2020-01-21 11:06:40 -05:00
dd137a0a30
Coord extraction implemented
2020-01-21 10:17:49 -05:00
c0e929dacb
Copy identifiers to placeholder resources ( #1675 )
...
* Copy identifiers to placeholder resources
* Add tests
* Maven cleanup
* Still messing around with azure
* Adding to logging
* More azure work
* One more attempt
* More messing around with azure
* Test fix
* Another caching attempt
* More work on azure pipeline
* Fix pipeline file
* Keep working on pipeline
* More work on azure
* More azure
* More azure work
* More azure
2020-01-21 06:09:06 +09:00
63c310c168
Make a constant public
2020-01-17 13:16:23 +08:00
aad5a30a3d
Support count=0 ( #1670 )
...
* Support count=0
* Fix LGTM issue
2020-01-15 14:52:32 +08:00
201ec34db4
Fix expunge issue when no tags present ( #1671 )
...
* Fix expunge issue when no tags present
* Add changelog
* Try to clean up POMs that are failing CI
* Rework dependencies
* Roll back change that did not work
2020-01-15 14:47:22 +08:00
1390ea3c06
Update FHIR R5 structures to 4.2.0 version ( #1665 )
...
* Work on upgrading core
* Work on R5 updates
* Work on core updates
* Test fix
* Update model version properties file for R5
* Bump core version
* Test fixes
* Add 4.2.0-SNAPSHOT version to versions page in docs
2020-01-14 10:27:01 +08:00
a19d246432
License header version bump, and add the ability for "add column"
...
migration tasks to fail gracefully
2020-01-12 11:01:21 +08:00
b30de00ea1
Add parser stress test
2020-01-08 09:12:17 -05:00
1720144cfb
Test fix
2020-01-08 05:39:44 -05:00
49ed374d2f
Remove test code that accudentally got committed
2020-01-06 14:26:30 -05:00
23ca94d3c5
Add example interceptor
2020-01-06 14:26:03 -05:00
e42acef66b
Test fix
2020-01-03 14:23:19 -05:00
ca3b4297e1
FIx #1649 - Account for LOINC file format changes in 2.67
2020-01-03 14:19:22 -05:00
5cfc75eac2
Test fixes
2019-12-25 13:05:33 -05:00
536f46c89e
Test fix
2019-12-21 12:24:15 -05:00
a3ac893635
Merge branch 'master' into master
2019-12-21 11:32:45 -05:00
5187ddf7a2
One more fix
2019-12-19 15:21:12 -05:00
ec4d7d1e99
Log a message if subscriptions are disabled on the server.
2019-12-18 15:18:16 -05:00
f9b8567a3a
Fix compile error
2019-12-17 19:28:07 -05:00
d9be281fff
Fix intermittent
2019-12-17 17:00:01 -05:00
6fc0bdb88f
Add licene headers
2019-12-16 11:14:17 -05:00
68a7613f9e
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
...
# Conflicts:
# hapi-fhir-cli/hapi-fhir-cli-api/src/main/java/ca/uhn/fhir/cli/BaseFlywayMigrateDatabaseCommand.java
2019-12-16 08:58:26 -05:00
f2221bcc69
Restore errorprone to the build
2019-12-15 19:11:27 -05:00
5f4355017d
More test logging
2019-12-15 07:45:29 -05:00
10deea4967
Merge pull request #1610 from jasmdk/MissingMandatoryStatusOnSnomed
...
Missing mandatory status on created Snomed CodeSystem
2019-12-11 19:27:47 -05:00
9e4f57836f
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
2019-12-05 21:45:31 -05:00
cafb6424f1
Test fix
2019-12-05 21:33:06 -05:00
6c432733d5
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
2019-12-05 18:03:02 -05:00
67b53e5326
Prevent ConcurrentModificationException during cascading delete
2019-12-05 18:00:40 -05:00
a939dab894
fake change to trigger CI
2019-12-05 11:53:41 -05:00
334daddf33
fake change to trigger CI
2019-12-05 10:32:53 -05:00
676a443cf2
NPEs
2019-12-04 21:20:09 -05:00
c516ab8a75
fake change
2019-12-04 18:02:10 -05:00
2f89f10c64
allow users to set default group
2019-12-04 17:23:51 -05:00
b171ff97ea
improve logging
2019-12-03 22:02:00 -05:00
09d2599ce5
fix test
2019-12-03 16:01:52 -05:00
5588da5ff8
Merge remote-tracking branch 'origin/master' into ks-20191119-scheduler
2019-12-03 08:51:50 -05:00
993d8220d1
review feedback
2019-12-02 11:18:52 -05:00
f58fba6f04
Some test cleanup ( #1616 )
...
* Some test cleanup
* Add test
* More test logging
* More docs cleanup
* Add test logging
2019-12-02 11:00:18 -05:00
63218e560d
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
2019-12-02 08:59:17 -05:00
86bd9a28fe
Fix to valueset expansion logic ( #1613 )
...
* Fox to valueset expansion logic
* Work on docs
* Docs tweaks
* Docs tweaks
* Fix test
* Remove unused class
* Add changelog
2019-12-01 21:21:19 -05:00
959dba7611
pre review cleanup
2019-12-01 16:51:01 -05:00
0c728a27df
remove unused mystery class
2019-11-29 16:07:38 -05:00
f92c2bb5f9
ensure only one @PostConstruct method to make order explicit
2019-11-29 11:46:03 -05:00
37eef4e3e4
rename schedule interface methods
2019-11-29 11:04:35 -05:00
321790f6bf
standardized job names and how they're scheduled
2019-11-29 10:12:13 -05:00
a0e363171d
replace FireAtInterval class with an interface for now
2019-11-29 09:21:20 -05:00
319eead414
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
2019-11-27 14:20:15 -05:00
29b08e7308
Missing mandatory status on created Snomed CodeSystem
2019-11-27 12:21:02 +01:00
f4fc19502b
Fix intermittent failure
2019-11-26 22:24:50 -03:00
a89bb6c411
simplified api
2019-11-25 20:59:40 -05:00
4c7c574eef
first pass scheduler working
2019-11-25 20:12:45 -05:00
8c4ffc024d
Merge remote-tracking branch 'remotes/origin/master' into ks-20191119-scheduler
2019-11-25 16:40:40 -05:00
ca620d652f
Add tests ( #1606 )
...
* Support chained HAS
* Add some tests
* Add some cleanup
* Work on intermittent tests
2019-11-24 10:11:49 +01:00
27749f4e23
Support chained HAS ( #1605 )
2019-11-24 06:29:56 +01:00
51b608188b
Some CI surefire improvements ( #1602 )
...
* Some CI surefire improvements
* Build tweak
* More tweak
* Update azure-pipelines.yml for Azure Pipelines
* Update azure-pipelines.yml for Azure Pipelines
* One more CI attempt
* Update azure-pipelines.yml for Azure Pipelines
* Tweak command line
* Another build test fixc
* More build cleanup
2019-11-23 19:51:02 +01:00
a2f77b23d2
Fix #1583 - Index local refs in canonical types ( #1593 )
...
* Fix #1583 - Index local refs in canonical types
* Add fix to pre-expansion
* Test fix
* Rework ID handling
* Test fixes
* Fix test
2019-11-23 16:32:37 +01:00
b36670377f
fix circular reference merge to master
2019-11-22 11:02:05 -05:00
a71eb039e3
merge two beans into one
2019-11-21 21:19:56 -05:00
6f9cd56c81
moved scheduler up to hapi-server
2019-11-20 14:30:24 -05:00
b73cdbcaf5
add factory
2019-11-19 17:23:06 -05:00
f3535a2bef
split scheduler from service
2019-11-19 13:32:20 -05:00
8fca468e1f
remove boolean from scheduling API
2019-11-19 10:13:22 -05:00
3173af31ae
Try to avoid intermittent test failure
2019-11-17 15:28:50 -05:00
74159dcb26
Work on refactoring how PIDs work ( #1580 )
...
* Start work on refactoring how PIDs work
* Some test fixes
* Test fixes
* Test fixes
* Restore accidentally deleted line
* One more tweak
* Rework resource link extraction
* Test fix
* Split out transaction processor
* Updates
* Test fix
* Test fixes
* Test fixes
* Clean up LGTM warning
* Fix compile failure
* One more test fix
* Fix LGTM issue
* Add spot for metadata
* Add test logging
* Remove testing code
* More test logging
* Add some test logging
* Attempty to fix intermittent test failure
* Improve exception tracking
* Work on simplifying search param registry
* Fix compile
* Fix compile errors
* Fix two test bugs
2019-11-17 14:35:19 -05:00
fba134853c
Remove unused code
2019-11-15 16:44:17 -05:00
a3ee2c1923
Unit tests for _filter-based URI matching
2019-11-14 19:04:23 -05:00
d2c0b21773
(1) Changes to equal and not-equal operator logic for numerics to use exact values per discussions with Grahame and James
...
(2) Additional unit tests
(3) Changes to tests affected by (1) above
2019-11-14 15:05:23 -05:00
995bda0623
update comment
2019-11-14 14:55:02 -05:00
ad39b319f8
fix test
2019-11-14 14:55:02 -05:00
1fff132f8e
fix test
2019-11-14 14:55:02 -05:00
ad8930fdba
handle paging case
2019-11-14 14:55:02 -05:00
f11d939131
oops
2019-11-14 14:55:02 -05:00
25c094e38a
skip trying to populate resources in search result bundle if no resources were found
2019-11-14 14:55:02 -05:00
497a96ae68
Version bump for next round of development
2019-11-12 22:09:21 -05:00
2c22b9d7ef
Added _filter unit tests for date type values.
2019-11-12 17:58:29 -05:00
f99ad981b5
Version bump to 4.1.0
2019-11-12 16:08:20 -05:00
bed0cc4d61
New unit tests to support _filter gt, lt, ge, and le operators for string types.
2019-11-12 15:06:17 -05:00
aa0301084b
Don't succeed validation on unknown codesystem ( #1575 )
...
* Don't succeed validation on unknown codesystem
* Test fixes
* Work on error messages
* Work on code validation API
* work on tests
* Work on validation
* Test fix
* Update DSTU3 validation reources
* Upgrade structures
* Test fixes
2019-11-12 14:35:49 -05:00
49ed6b48dc
Merged James' most recent changes.
2019-11-12 13:57:02 -05:00
09daf7aacc
Implemented changes/fixes and associated unit tests for following _filter operators for strings:
...
- eq
- ne
- co
- sw
- ew
2019-11-11 21:58:49 -05:00
1a348abaf5
Try to fix 2 intermittent test failures
2019-11-08 08:45:08 -05:00
3b1d8d1bc0
Add test logging sort
2019-11-08 07:27:25 -05:00
7c8342dcc1
Add some test logging
2019-11-08 05:53:59 -05:00
c027ff27c3
Merge branch 'master' of github.com:jamesagnew/hapi-fhir
2019-11-07 21:52:31 -05:00
d4aea82460
Add some test logging
2019-11-07 21:50:06 -05:00
056756dbab
Fix paging issue #1300 ( #1584 )
...
* Fix paging issue
* Add changelog with credit
* Add a test
2019-11-07 18:17:09 -05:00
ebc52e6b48
Correctly handle below expansion with missing system
2019-11-07 09:28:24 -05:00
92de268f32
Fixes for LGTM warnings
2019-11-06 08:47:53 -05:00
3cf8254625
(1) Fixes to address _filter-based _id retrievals not being restricted to the specified resource type
...
(2) Import fix for FhirServerConfig.java in hapi-fhir-jpaserver-example
2019-11-06 08:47:53 -05:00
9c93d5d7f7
Test fixes
2019-11-04 07:04:26 -05:00
78a323f105
Test fixes
2019-11-03 21:20:22 -05:00
f481e11ad5
Update migration tasks
2019-11-03 18:49:47 -05:00
60628356a8
Version bump spring
2019-11-03 11:29:22 -05:00
2bf578879a
One more bit of extensibility
2019-11-02 19:03:46 -04:00
f7ad82d7a8
Add a test
2019-11-02 18:47:02 -04:00
5ad57d9ea9
Add some API to subscriptionactivating interceptor to make it more
...
extendible
2019-11-02 18:14:50 -04:00
89b25ce828
License updates
2019-11-02 17:34:05 -04:00
3b6709e1d1
Merge pull request #1566 from jamesagnew/ja_20190928_rationalize_search_param_extractor
...
Rationalize search param extractors across FHIR versions
2019-11-02 16:18:23 -04:00
33a3ea8fca
Fix compile error
2019-10-30 16:23:24 -04:00
cacd243a44
Correctly Expand ValueSets in non-lucene mode ( #1573 )
2019-10-30 16:21:44 -04:00
1fd3948b12
Merge pull request #1572 from jamesagnew/ks-source-subscriptions
...
fixed in-memory search by _source for Dstu3
2019-10-30 16:20:14 -04:00
e96500d54f
Add a test
2019-10-30 15:51:46 -04:00
7f62d60c4e
Correctly Expand ValueSets in non-lucene mode
2019-10-30 14:26:31 -04:00
21c591eaf2
ready for review
2019-10-30 13:49:10 -04:00
d3e66680f0
Add some testing
2019-10-30 09:49:40 -04:00
b90f285218
Merge branch 'master' into ja_20190928_rationalize_search_param_extractor
2019-10-30 08:41:14 -04:00
007cfaf00e
Don't error out on missing CS ( #1570 )
...
* Don't error out on mi9ssing CS
* Add tests
* Add a bit of test coverage
* One more test
2019-10-30 08:38:39 -04:00
9c852283e9
Correctly handle "special" search params in CS ( #1569 )
...
* Correctly handle "special" search params in CS
* Add another test
2019-10-30 05:31:25 -04:00
84803a02ef
Preserve line numbers in XML validation ( #1567 )
...
* Preserve line numbers in XML validation
* Test fixes
2019-10-29 15:54:49 -04:00
c5f48b6b47
Add tests
2019-10-29 13:24:43 -04:00
3dfb6959c1
Don't reload terminology resources when nothing has changed
2019-10-29 11:35:26 -04:00
2b8426114f
Test fixes
2019-10-28 10:58:14 -04:00
d321a8276a
Fix intermittent
2019-10-28 10:45:39 -04:00
75ad205bd5
Try to fix intermittent
2019-10-28 07:23:49 -04:00
51a0006548
Work on rationalizing search param extractor
2019-10-27 20:04:33 -04:00
ac4d108126
Merge branch 'ja_20190928_rationalize_search_param_extractor' of github.com:jamesagnew/hapi-fhir into ja_20190928_rationalize_search_param_extractor
2019-10-27 18:17:29 -04:00
Ken Stevens
James Agnew
ahn
Anthony Sute